ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7k17 |
|---|---|
| Clone Library Name | barley_pub |
>CK5P1_ARATH (Q8H0V1) CDK5RAP1-like protein| Length = 640 Score = 93.6 bits (231), Expect = 4e-19 Identities = 48/86 (55%), Positives = 65/86 (75%), Gaps = 4/86 (4%) Frame = -3 Query: 641 QIGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTS---EGDG-ARKPVVGDF 474 Q+G+TQ+VLVEGPNKRAPETEL GKTD+GHRVSF + P+ + +GD R P +GDF Sbjct: 540 QVGSTQLVLVEGPNKRAPETELIGKTDKGHRVSFVTKPLFDKACLLDGDDLKRNPGIGDF 599 Query: 473 VEVKILRSSTASLSGEPIARTSLGMY 396 VEV+I +S+ ASL GE +A + + ++ Sbjct: 600 VEVQIEKSTRASLFGEALAISKMSLF 625
>CK5P1_RAT (Q9JLH6) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 586 Score = 47.4 bits (111), Expect = 4e-05 Identities = 28/78 (35%), Positives = 46/78 (58%) Frame = -3 Query: 638 IGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKI 459 +G TQ+VLVEG +KR+ T+L G+ D +V F V ++ + GD+V VKI Sbjct: 501 VGCTQLVLVEGFSKRST-TDLCGRNDANLKVIFPDAEVEDITDPGLKVRAQPGDYVLVKI 559 Query: 458 LRSSTASLSGEPIARTSL 405 + +S+ +L G + RT++ Sbjct: 560 ISASSQTLKGHILCRTTM 577
>CK5P1_HUMAN (Q96SZ6) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 601 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Frame = -3 Query: 638 IGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKI 459 +G TQ+VLVEG +KR+ T+L G+ D +V F + + + GD+V VKI Sbjct: 518 VGCTQLVLVEGLSKRSA-TDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKI 576 Query: 458 LRSSTASLSGEPIARTSL---GMYC 393 +S+ +L G + RT+L YC Sbjct: 577 TSASSQTLRGHVLCRTTLRDSSAYC 601
>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 588 Score = 43.9 bits (102), Expect = 4e-04 Identities = 27/78 (34%), Positives = 44/78 (56%) Frame = -3 Query: 638 IGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKI 459 +G +Q+VLVEG +KR+ T+L G+ D +V F V + + GD+V VKI Sbjct: 503 VGCSQLVLVEGFSKRST-TDLCGRNDANLKVIFPDAEVEDITNPGLKVRAQPGDYVLVKI 561 Query: 458 LRSSTASLSGEPIARTSL 405 +S+ +L G + RT++ Sbjct: 562 TSASSQTLKGHILCRTTM 579
>CK5P1_DROME (Q9VGZ1) CDK5RAP1-like protein| Length = 583 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/77 (29%), Positives = 43/77 (55%) Frame = -3 Query: 635 GTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKIL 456 G Q++L+EG +KR+ + FG+ D +V S+ V + + + VGDF+ V+I Sbjct: 498 GQEQLILIEGKSKRS-DAHWFGRNDANIKVIVPSIYVPISGDSTARKSFGVGDFLAVRIE 556 Query: 455 RSSTASLSGEPIARTSL 405 S++ L G P+ +++ Sbjct: 557 ESNSQVLKGTPLELSNI 573
>Y1001_PASMU (Q9L699) Hypothetical UPF0004 protein PM1001| Length = 474 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/73 (36%), Positives = 38/73 (52%) Frame = -3 Query: 638 IGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKI 459 +GT Q VLVEGP+K+ EL G+T+ V+F P ++G FV++KI Sbjct: 381 LGTEQRVLVEGPSKK-DLMELTGRTETNRIVNFVGTP------------DMIGKFVDIKI 427 Query: 458 LRSSTASLSGEPI 420 T SL GE + Sbjct: 428 TDVFTNSLRGEVV 440
>Y019_HAEIN (Q57163) Hypothetical UPF0004 protein HI0019| Length = 474 Score = 40.4 bits (93), Expect = 0.004 Identities = 28/73 (38%), Positives = 38/73 (52%) Frame = -3 Query: 638 IGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKI 459 +GT Q VLVEGP+K+ EL G+T+ V+F P ++G FV+VKI Sbjct: 381 LGTEQRVLVEGPSKK-DIMELTGRTETNRIVNFQGSP------------EMIGKFVDVKI 427 Query: 458 LRSSTASLSGEPI 420 T SL GE + Sbjct: 428 TDVYTNSLRGEVV 440
>YLEA_ECOLI (P0AEI1) Hypothetical UPF0004 protein yleA| Length = 474 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/73 (31%), Positives = 38/73 (52%) Frame = -3 Query: 638 IGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKI 459 +GTTQ +LVEG ++++ EL G+T+ V+F P ++G FV+V+I Sbjct: 381 LGTTQRILVEGTSRKS-IMELSGRTENNRVVNFEGTP------------DMIGKFVDVEI 427 Query: 458 LRSSTASLSGEPI 420 SL G+ + Sbjct: 428 TDVYPNSLRGKVV 440
>YLEA_ECOL6 (P0AEI2) Hypothetical UPF0004 protein yleA| Length = 474 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/73 (31%), Positives = 38/73 (52%) Frame = -3 Query: 638 IGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKI 459 +GTTQ +LVEG ++++ EL G+T+ V+F P ++G FV+V+I Sbjct: 381 LGTTQRILVEGTSRKS-IMELSGRTENNRVVNFEGTP------------DMIGKFVDVEI 427 Query: 458 LRSSTASLSGEPI 420 SL G+ + Sbjct: 428 TDVYPNSLRGKVV 440
>YLEA_ECO57 (P0AEI3) Hypothetical UPF0004 protein yleA| Length = 474 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/73 (31%), Positives = 38/73 (52%) Frame = -3 Query: 638 IGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKI 459 +GTTQ +LVEG ++++ EL G+T+ V+F P ++G FV+V+I Sbjct: 381 LGTTQRILVEGTSRKS-IMELSGRTENNRVVNFEGTP------------DMIGKFVDVEI 427 Query: 458 LRSSTASLSGEPI 420 SL G+ + Sbjct: 428 TDVYPNSLRGKVV 440
>Y996_SYNY3 (P73127) Hypothetical UPF0004 protein sll0996| Length = 451 Score = 33.9 bits (76), Expect = 0.42 Identities = 24/74 (32%), Positives = 40/74 (54%) Frame = -3 Query: 638 IGTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKI 459 +G + VLVEG N ++P ++ G+T RG+R++F G ++G V VKI Sbjct: 386 LGRVEEVLVEGENLKSPG-QVMGRT-RGNRLTFFQ----------GEISELLGKTVPVKI 433 Query: 458 LRSSTASLSGEPIA 417 + SL+GE ++ Sbjct: 434 TEARAFSLTGEALS 447
>Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441| Length = 439 Score = 33.5 bits (75), Expect = 0.55 Identities = 25/70 (35%), Positives = 37/70 (52%) Frame = -3 Query: 635 GTTQVVLVEGPNKRAPETELFGKTDRGHRVSFTSLPVTHTSEGDGARKPVVGDFVEVKIL 456 G+ Q VLVEG + + +L+G+T+ V+F G+ K ++G FV VKI Sbjct: 381 GSIQSVLVEGVSDKNI-MDLYGRTENNRVVTF-----------QGSSK-MIGQFVNVKIK 427 Query: 455 RSSTASLSGE 426 + T SL GE Sbjct: 428 KVHTHSLKGE 437
>Y921_MYCBO (P64752) Hypothetical protein Mb0921c| Length = 535 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = -3 Query: 521 HTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIARTSLGMYCK 390 H+ DGA V G FV V + + ASL GEP+A + G K Sbjct: 275 HSDGSDGAEHLVRGRFVLVGVTPAVLASLLGEPVAALAPGAQVK 318
>Y897_MYCTU (P64751) Hypothetical protein Rv0897c/MT0921| Length = 535 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = -3 Query: 521 HTSEGDGARKPVVGDFVEVKILRSSTASLSGEPIARTSLGMYCK 390 H+ DGA V G FV V + + ASL GEP+A + G K Sbjct: 275 HSDGSDGAEHLVRGRFVLVGVTPAVLASLLGEPVAALAPGAQVK 318
>GCS1_CAEEL (Q19426) Probable mannosyl-oligosaccharide glucosidase (EC| 3.2.1.106) (Processing A-glucosidase I) Length = 781 Score = 30.4 bits (67), Expect = 4.6 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Frame = +1 Query: 88 LQLLPSKEKVLHHTISRHTMRKILW----ISAAPSITPCYLLLKT-RQPISHHENISTNL 252 L+L+PSK +L + + KILW + + +P Y+ T P I N+ Sbjct: 641 LKLIPSKSPILKSMLDKIRDPKILWTNYGLRSISRSSPYYMARNTEHDPPYWRGYIWINV 700 Query: 253 NWMICSQLQSFQVKHYA 303 N+M+ S L +HYA Sbjct: 701 NYMVLSSL-----RHYA 712 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,962,521 Number of Sequences: 219361 Number of extensions: 1823351 Number of successful extensions: 4579 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4423 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4574 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
