ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7k12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane ... 32 1.6
2YRHG_BACSU (O05399) Hypothetical transport protein yrhG 32 1.6
3HELS_SULSO (Q97VY9) Putative ski2-type helicase (EC 3.6.1.-) 31 3.6
4AUS1_YEAST (Q08409) ATP-dependent permease AUS1 31 3.6
5LEE1_YEAST (Q02799) Zinc finger protein LEE1 31 4.7
6YEB6_YEAST (P39997) Hypothetical 57.4 kDa protein in PMP2-VAC8 i... 30 8.0

>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic|
           protein 2.7) (OsPIP2.7)
          Length = 290

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 533 GGAYALIPYFVLWKPPP-PAIDEDEIGQWPL-KFLESKITAGVIF 405
           G A A  PY   W PPP P +D  E+G+W L + L ++  A +IF
Sbjct: 15  GAAAAKAPY---WDPPPAPLLDTSELGKWSLYRALIAEFMATLIF 56



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>YRHG_BACSU (O05399) Hypothetical transport protein yrhG|
          Length = 266

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 578 KSKIPVWPFLVLSCIGGAYALIPYFVLWKPPPPAIDEDEIGQWPLKFLE-SKITAGVIFA 402
           K K+P+   LVL  +GGA+  + Y          +D   IG  P ++   S +    +F 
Sbjct: 20  KIKLPLPSLLVLGFLGGAFIALGYL---------LDIRVIGDLPKEWGSLSSLIGAAVFP 70

Query: 401 VGLGLIIFAG 372
           VGL L++ AG
Sbjct: 71  VGLILVVLAG 80



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>HELS_SULSO (Q97VY9) Putative ski2-type helicase (EC 3.6.1.-)|
          Length = 708

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 192 RHK*QWQNPRTIFPSS*CHIIVDPKRREGREQSKIKTRGMNKLALSKVLKKFPPI 356
           RH+  W N    F     H + DP+R    E   I+ +  N LALS  +  +  I
Sbjct: 130 RHRPDWLNEANYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISNYKQI 184



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>AUS1_YEAST (Q08409) ATP-dependent permease AUS1|
          Length = 1394

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
 Frame = +1

Query: 37  SSYLYNLHMAKIDQWLHSSYFRD-------SSLSDD-EEVAPS 141
           + Y YN      DQW HSSY+R+       SS+ D  +EV PS
Sbjct: 315 TKYTYNSDFDLYDQWKHSSYYRNIKQQIQGSSIDDSIKEVDPS 357



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>LEE1_YEAST (Q02799) Zinc finger protein LEE1|
          Length = 301

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 316 NLLSLKY*KNSRQSSPPALPAKIISPRPTAKITPAVILDSRNFNGHCPISSSS 474
           N  S +Y   S Q SP AL  +  SP  ++        ++ N N + P+SSSS
Sbjct: 197 NYFSSQYLMYSPQKSPEALYTEFFSPPSSSSSYINYSYNNSNINAYSPVSSSS 249



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>YEB6_YEAST (P39997) Hypothetical 57.4 kDa protein in PMP2-VAC8 intergenic|
           region
          Length = 493

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 447 WPLSNFIFINGRWRRFPQNKVR----NQRICSSNA*KHQEWPDWDLAF*TSSSGKKQHAV 614
           +P+ + I  N  W  F  ++ R    + RI S+ A      P W L   T S G+ + A 
Sbjct: 139 YPIEHGIVSNIFWDNFTSSEFRPNNLDARIWSNTAD-----PIWQLLQ-TESQGEYKVAT 192

Query: 615 HQWPDSHYVPQRH 653
           H WP S  V + H
Sbjct: 193 HMWPGSEVVYEDH 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,417,404
Number of Sequences: 219361
Number of extensions: 2438889
Number of successful extensions: 6849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6844
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 7902193040
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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