ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7k10 |
|---|---|
| Clone Library Name | barley_pub |
>PMM_ARATH (O80840) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 246 Score = 240 bits (612), Expect = 3e-63 Identities = 106/132 (80%), Positives = 127/132 (96%) Frame = -2 Query: 615 IKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFS 436 IKRGTFIEFR+GM+NVSPIGRNCSQEERD+FE+YDKV N+RPKMV+ LRE+FAHLNLTFS Sbjct: 115 IKRGTFIEFRNGMLNVSPIGRNCSQEERDEFERYDKVQNIRPKMVAELRERFAHLNLTFS 174 Query: 435 IGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSPN 256 IGGQISFDVFP+GWDKTYCL+YLE+F EIHFFGDKTY+GGND+EI+ES +T+GH+VTSP+ Sbjct: 175 IGGQISFDVFPKGWDKTYCLQYLEDFSEIHFFGDKTYEGGNDYEIYESPKTIGHSVTSPD 234 Query: 255 DTVQQCKSIFLS 220 DTV +CK++F+S Sbjct: 235 DTVAKCKALFMS 246
>PMM_SCHPO (Q9UTJ2) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 257 Score = 193 bits (490), Expect = 4e-49 Identities = 88/132 (66%), Positives = 109/132 (82%), Gaps = 2/132 (1%) Frame = -2 Query: 615 IKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFS 436 +KRGTFIEFR+GMIN+SP+GRN + EER++FE++DK +R MV VLREKF LTFS Sbjct: 124 VKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDYGLTFS 183 Query: 435 IGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTS 262 IGGQISFDVFP GWDKTYCL+++E+ F IHFFGDKTYKGGND+EIF RT+GH+VT+ Sbjct: 184 IGGQISFDVFPAGWDKTYCLQHVEKEGFDTIHFFGDKTYKGGNDYEIFVDPRTIGHSVTN 243 Query: 261 PNDTVQQCKSIF 226 P+DT+ + K IF Sbjct: 244 PDDTIAELKKIF 255
>PMM_YEAST (P07283) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 254 Score = 186 bits (473), Expect = 4e-47 Identities = 86/131 (65%), Positives = 107/131 (81%), Gaps = 2/131 (1%) Frame = -2 Query: 612 KRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFSI 433 +RGTF+EFR+GMINVSPIGRN S EER++FE+YDK H +R K V L+++F LTFSI Sbjct: 122 RRGTFLEFRNGMINVSPIGRNASTEERNEFERYDKEHQIRAKFVEALKKEFPDYGLTFSI 181 Query: 432 GGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 259 GGQISFDVFP GWDKTYCL+++E+ FKEIHFFGDKT GGND+EIF +RT+GH+V SP Sbjct: 182 GGQISFDVFPAGWDKTYCLQHVEKDGFKEIHFFGDKTMVGGNDYEIFVDERTIGHSVQSP 241 Query: 258 NDTVQQCKSIF 226 +DTV+ +F Sbjct: 242 DDTVKILTELF 252
>PMM_CANAL (P31353) Phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 252 Score = 185 bits (470), Expect = 8e-47 Identities = 83/132 (62%), Positives = 107/132 (81%), Gaps = 2/132 (1%) Frame = -2 Query: 615 IKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFS 436 I+RGTFIEFR+GMINVSPIGRN S +ER+D+EK+DK H++R MV L+++F LT+S Sbjct: 118 IRRGTFIEFRNGMINVSPIGRNASTQERNDYEKFDKQHHIRETMVEALKKEFPDFGLTYS 177 Query: 435 IGGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTS 262 IGGQISFDVFP GWDKTYCL+++E+ F+ IHFFGDK+YKGGND+EI+ RT+GH V S Sbjct: 178 IGGQISFDVFPTGWDKTYCLQHVEDEHFENIHFFGDKSYKGGNDYEIYNDPRTIGHAVNS 237 Query: 261 PNDTVQQCKSIF 226 P+DT++ F Sbjct: 238 PDDTIRILNETF 249
>PMM2_MACFA (Q60HD6) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 246 Score = 181 bits (458), Expect = 2e-45 Identities = 86/131 (65%), Positives = 105/131 (80%), Gaps = 2/131 (1%) Frame = -2 Query: 612 KRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFSI 433 KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK N+R K V+ LR++FA LTFSI Sbjct: 115 KRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSI 174 Query: 432 GGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 259 GGQISFDVFP GWDK YCLR++E +K I+FFGDKT GGNDHEIF RTVG++VT+P Sbjct: 175 GGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYSVTAP 234 Query: 258 NDTVQQCKSIF 226 DT + C+ +F Sbjct: 235 EDTRRICEELF 245
>PMM2_MOUSE (Q9Z2M7) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 242 Score = 180 bits (456), Expect = 3e-45 Identities = 86/131 (65%), Positives = 105/131 (80%), Gaps = 2/131 (1%) Frame = -2 Query: 612 KRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFSI 433 KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK ++R K V+ LR++FA LTFSI Sbjct: 111 KRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKEHIRQKFVADLRKEFAGKGLTFSI 170 Query: 432 GGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 259 GGQIS DVFP+GWDK YCLR+LE +K I+FFGDKT GGNDHEIF RTVG+TVT+P Sbjct: 171 GGQISIDVFPEGWDKRYCLRHLEHAGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYTVTAP 230 Query: 258 NDTVQQCKSIF 226 DT + C+ +F Sbjct: 231 EDTRRICEGLF 241
>PMM2_HUMAN (O15305) Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2)| Length = 246 Score = 179 bits (453), Expect = 7e-45 Identities = 85/131 (64%), Positives = 105/131 (80%), Gaps = 2/131 (1%) Frame = -2 Query: 612 KRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFSI 433 KRGTFIEFR+GM+NVSPIGR+CSQEER +F + DK N+R K V+ LR++FA LTFSI Sbjct: 115 KRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSI 174 Query: 432 GGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 259 GGQISFDVFP GWDK YCLR++E +K I+FFGDKT GGNDHEIF RT+G++VT+P Sbjct: 175 GGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTAP 234 Query: 258 NDTVQQCKSIF 226 DT + C+ +F Sbjct: 235 EDTRRICELLF 245
>PMM_CAEEL (Q9XUE6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 245 Score = 175 bits (444), Expect = 8e-44 Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 1/130 (0%) Frame = -2 Query: 615 IKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFS 436 +KRG F+EFR+GMIN+SPIGR+CSQEER F ++DK H +R K LREKF L F+ Sbjct: 111 VKRGNFVEFRNGMINLSPIGRSCSQEERMQFVEFDKKHGIRQKFTEQLREKFGQYGLQFA 170 Query: 435 IGGQISFDVFPQGWDKTYCLRYL-EEFKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 259 IGGQIS DVFP GWDKT+CL+YL +F IHFFGDKT GGNDHEIF +RTVGHTV P Sbjct: 171 IGGQISVDVFPTGWDKTFCLQYLVPDFDTIHFFGDKTAPGGNDHEIFADERTVGHTVEGP 230 Query: 258 NDTVQQCKSI 229 DT + +++ Sbjct: 231 EDTRKHVENV 240
>PMM_DROME (Q9VTZ6) Probable phosphomannomutase (EC 5.4.2.8) (PMM)| Length = 254 Score = 175 bits (444), Expect = 8e-44 Identities = 81/125 (64%), Positives = 101/125 (80%), Gaps = 3/125 (2%) Frame = -2 Query: 615 IKRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFS 436 IKRGTFIEFR+GM+NV PIGR C++EER+ F +YD H VR KM+ L+++FA ++LT+S Sbjct: 120 IKRGTFIEFRNGMMNVCPIGRQCTREERNMFAEYDIEHKVREKMIKDLKQEFADVDLTYS 179 Query: 435 IGGQISFDVFPQGWDKTYCLRYLE---EFKEIHFFGDKTYKGGNDHEIFESDRTVGHTVT 265 IGGQISFDVFP GWDKTYCLR++E +FKEIHFFGDKT GGND+EI+ RT+ H V Sbjct: 180 IGGQISFDVFPHGWDKTYCLRHIEAHYKFKEIHFFGDKTEPGGNDYEIYSDPRTISHRVY 239 Query: 264 SPNDT 250 +P DT Sbjct: 240 TPKDT 244
>PMM1_HUMAN (Q92871) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1) (PMMH-22)| Length = 262 Score = 168 bits (425), Expect = 1e-41 Identities = 80/134 (59%), Positives = 98/134 (73%), Gaps = 2/134 (1%) Frame = -2 Query: 612 KRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFSI 433 KRGTFIEFR+GM+N+SPIGR+C+ EER +F + DK +R K V L+ +FA L FS Sbjct: 124 KRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSR 183 Query: 432 GGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 259 GG ISFDVFP+GWDK YCL L++ F IHFFG++T GGND EIF RTVGH+V SP Sbjct: 184 GGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSP 243 Query: 258 NDTVQQCKSIFLSE 217 DTVQ+C+ IF E Sbjct: 244 QDTVQRCREIFFPE 257
>PMM1_MOUSE (O35621) Phosphomannomutase 1 (EC 5.4.2.8) (PMM 1)| Length = 262 Score = 167 bits (422), Expect = 3e-41 Identities = 80/134 (59%), Positives = 98/134 (73%), Gaps = 2/134 (1%) Frame = -2 Query: 612 KRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLNLTFSI 433 KRGTFIEFR+GM+NVSPIGR+C+ EER +F + DK +R K V L+ +FA L FS Sbjct: 124 KRGTFIEFRNGMLNVSPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSR 183 Query: 432 GGQISFDVFPQGWDKTYCLRYLEE--FKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 259 GG ISFDVFP+GWDK YCL L+E F IHFFG++T GGND EI+ RTVGH+V SP Sbjct: 184 GGMISFDVFPEGWDKRYCLDSLDEDSFDIIHFFGNETSPGGNDFEIYADPRTVGHSVVSP 243 Query: 258 NDTVQQCKSIFLSE 217 DTVQ+C+ +F E Sbjct: 244 QDTVQRCRELFFPE 257
>PMM_BABBO (O43976) Phosphomannomutase (EC 5.4.2.8)| Length = 246 Score = 128 bits (321), Expect = 2e-29 Identities = 61/130 (46%), Positives = 84/130 (64%), Gaps = 2/130 (1%) Frame = -2 Query: 612 KRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVSVLREKFAHLN--LTF 439 KRGTFIE R +IN+ P GRNCS +R F +YD +H+VR K++ VL+ +F + L+F Sbjct: 113 KRGTFIEHRKSLINICPPGRNCSMVDRRRFVEYDSIHHVRQKLIQVLKSQFDSDDCPLSF 172 Query: 438 SIGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGDKTYKGGNDHEIFESDRTVGHTVTSP 259 GGQIS DV+P+ W K+ L ++ + IHFFGD T +GGND EI+ +GHTVT Sbjct: 173 VAGGQISIDVYPKAWSKSIALSHIGKCDVIHFFGDNTREGGNDFEIYNHPDVIGHTVTGY 232 Query: 258 NDTVQQCKSI 229 D V Q + + Sbjct: 233 KDLVNQLEEL 242
>XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte surface| antigen) (721P) (Protein XE7) Length = 695 Score = 33.1 bits (74), Expect = 0.66 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = -2 Query: 525 FEKYDKVHNVRPKMVSVLREKFAHLNL-TFSIGGQISFDVFPQ 400 FEK+ ++ NV M+ RE+ N TFS GG ++F+ + Q Sbjct: 178 FEKFGEIRNVDIPMLDPYREEMTGRNFHTFSFGGHLNFEAYVQ 220
>EA31_LAMBD (P03753) Protein ea31| Length = 296 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Frame = -2 Query: 594 EFRSGMINVSPIGRNCSQEERDDFEKYDKVHNVRPKMVS---VLREKFAHLNLTFSIGGQ 424 EF IN+ P R+C+ E+ D+VH + RE++ + N G Sbjct: 131 EFSVMPINLVPSCRDCNMGEKGQVFAVDEVHQAIHPYIDKDIFFREQWVYANFVSGTPGA 190 Query: 423 ISFDV-FPQGWDKTYCLRYLEEFK 355 ISF V P W + R L FK Sbjct: 191 ISFYVECPANWRQEDKHRALHHFK 214
>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding| protein 19) Length = 1895 Score = 32.3 bits (72), Expect = 1.1 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Frame = -2 Query: 522 EKYDKVHNVRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLE----EFK 355 EK D ++ K + K HL T ++ G IS + FP + CLR+L+ + K Sbjct: 1375 EKLDLENSRHLKNLPTSIYKLKHLE-TLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIK 1433 Query: 354 EIHFFGDKTYKGGNDHEIFESDRTVGHTVTSPN 256 E+ +Y D +F R VT+PN Sbjct: 1434 ELP--SSISYLTALDELLFVDSRRNSPVVTNPN 1464
>Y33B_DROME (Q9U1M2) Hypothetical protein CG32795 in chromosome 1| Length = 387 Score = 32.0 bits (71), Expect = 1.5 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -2 Query: 612 KRGTFIEFRSGMINVSPIGRNCSQEERDDFEKYDKVHNV 496 K G +++ G +NVS + RN +DD+EK+ + NV Sbjct: 98 KSGRYLQIILGDVNVSILNRNDKVRYKDDYEKFKLILNV 136
>YT72_CAEEL (Q11086) Hypothetical protein C01C10.2| Length = 204 Score = 29.6 bits (65), Expect = 7.3 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 26/109 (23%) Frame = -2 Query: 453 LNLTFSIGGQISFDVFPQ--------GWDKT------YCLRYLEEFKEIHFFGDKTY--- 325 LNLTFS +IS DVF Q W + Y + Y+++ E+ F D + Sbjct: 13 LNLTFSPKSEISEDVFKQMFSSLDRLWWSRLVISIRGYVINYVQQNDEVLFSCDDAFIKI 72 Query: 324 ------KGGNDHEIFESDRTVGHTVTSPNDTVQQC---KSIFLSE*SPD 205 + + FE + H + N +Q KSI ++ SP+ Sbjct: 73 HQKLAERNSQFEDAFEYLTAIFHVIREKNTLIQMISNPKSISTTKISPN 121
>VMP_FMVD (P09520) Movement protein (Cell-to-cell transport protein)| Length = 323 Score = 29.3 bits (64), Expect = 9.6 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 2/127 (1%) Frame = -2 Query: 513 DKVHNVRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLEEFKEIHFFGD 334 D++ N + ++ R A+ F++ + + + + DKT + E K++ GD Sbjct: 152 DRIVNRKDSLLGAARGNLAYGKFMFTVYPKFALSLQSKNLDKTLSFIHQFERKDLMKTGD 211 Query: 333 KTYKGGNDHEIFESDRTVGHTVTSPNDTVQQCK--SIFLSE*SPDYHSFVHPAPLERSPF 160 K +F +G+ +T+ + +++ K +I + E F +E SPF Sbjct: 212 K---------VFTVTYLIGYALTNSHHSIEYRKNSNIEIEE------VFKDIGQIEESPF 256 Query: 159 WNNSSVD 139 + S +D Sbjct: 257 CDISPID 263
>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID| domain-containing protein 2) (BRG1-associated factor 200) (BAF200) Length = 1835 Score = 29.3 bits (64), Expect = 9.6 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = -2 Query: 390 KTYCLRYLEEFKEIHFFGD 334 K Y LRYLE+++++H FG+ Sbjct: 90 KQYYLRYLEKYEKVHHFGE 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,755,208 Number of Sequences: 219361 Number of extensions: 2133407 Number of successful extensions: 5544 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5295 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5533 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
