ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7k05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5258_ARATH (Q9FK81) Protein At5g22580 101 2e-21
2POP3_ARATH (Q9LUV2) Putative Pop3 protein 74 3e-13
3CSBB_BACSU (Q45539) Putative glycosyl transferase csbB (EC 2.-.-.-) 32 1.5
4YB9X_YEAST (P38149) Hypothetical 98.1 kDa Trp-Asp repeats-contai... 29 9.9

>Y5258_ARATH (Q9FK81) Protein At5g22580|
          Length = 111

 Score =  101 bits (251), Expect = 2e-21
 Identities = 47/99 (47%), Positives = 65/99 (65%)
 Frame = -1

Query: 573 FKHLCLVRFKEGVVVDDIIQQLTKLAAELDTVKFFGWGKDVLNQETLTQGFTHVFSMSFA 394
           FKHL +V+FKE   VD+I++ L  L +++DTVK F WG+D  + + L QGFTH FSM+F 
Sbjct: 6   FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFE 65

Query: 393 SAEDLAACMGHEKHSAFAATFMAVLDKVVVLDFPFVVAK 277
           + +   A   H  H  F+A F AV+DK+V+LDFP    K
Sbjct: 66  NKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVK 104



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>POP3_ARATH (Q9LUV2) Putative Pop3 protein|
          Length = 109

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
 Frame = -1

Query: 570 KHLCLVRFKEGVV---VDDIIQQLTKLAAELDTVKFFGWGKDVLNQETLTQGFTHVFSMS 400
           KH+ L  FK+GV    ++++I+    L   ++ +K F WGKDV + E L QG+TH+F  +
Sbjct: 9   KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDV-SIENLHQGYTHIFEST 67

Query: 399 FASAEDLAACMGHEKHSAFAATFMAVLDKVVVLDF 295
           F S E +A  + H  H  FA  F+  LDKV+V+D+
Sbjct: 68  FESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102



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>CSBB_BACSU (Q45539) Putative glycosyl transferase csbB (EC 2.-.-.-)|
          Length = 329

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 531 VDDIIQQLTKLAAELDTVKFFGWGKDVLNQETLTQGFTHV 412
           VDD +QQ+  LAA    VK+  + ++   +  +  GF HV
Sbjct: 47  VDDTLQQIKDLAATCSRVKYISFSRNFGKEAAILAGFEHV 86



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>YB9X_YEAST (P38149) Hypothetical 98.1 kDa Trp-Asp repeats-containing protein|
           in PAF1-MRPL27 intergenic region
          Length = 878

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 558 LVRFKEGVVVDDIIQQLTKLAAELDTVKFFGWGKDVLNQETLTQGFT 418
           L    E   V D+I   TK +  + TVKF G G   +  +++T G +
Sbjct: 703 LANIDENTTVQDLITNWTKPSLSMTTVKFSGPGNITVIPKSVTMGIS 749


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,311,714
Number of Sequences: 219361
Number of extensions: 1205704
Number of successful extensions: 3161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3159
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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