>YIJ7_YEAST (P40492) Hypothetical 59.9 kDa protein in SGA1-KTR7 intergenic|
           region
          Length = 516

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = -2

Query: 608 LFEQNQWDFLVDQFKQEFYKLYGMTLEPLLNIYLQAGLTALKTPFC 471
           L +  +W  L D F  +FY +YG++    L IYL  G+++LKT  C
Sbjct: 350 LLDDQRWSVLNDLFLSDFYSMYGISQNDPLLIYLSLGISSLKTRDC 395

>U2508_MOUSE (Q91YQ7) Protein UNQ2508/PRO5996 homolog|
          Length = 393

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = -3

Query: 385 HHSKLVCHITKELMDTENPPLVLPNGYVYSTKALDEMAKKNGGKITCP 242
           +HS   C I ++     NPP+ L  G+V S  AL+++   NGGK+ CP
Sbjct: 332 YHSVFACPILRQQTSDSNPPIKLICGHVISRDALNKLI--NGGKLKCP 377

>U2508_HUMAN (Q96G75) Protein UNQ2508/PRO5996|
          Length = 393

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = -3

Query: 385 HHSKLVCHITKELMDTENPPLVLPNGYVYSTKALDEMAKKNGGKITCP 242
           +HS   C I ++     NPP+ L  G+V S  AL+++   NGGK+ CP
Sbjct: 332 YHSVFACPILRQQTSDSNPPIKLICGHVISRDALNKLI--NGGKLKCP 377

>RMD5_YEAST (Q12508) Sporulation protein RMD5 (Glucose-induced degradation|
           protein 2)
          Length = 421

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -3

Query: 397 FSKQHHSKLVCHITKELMDTENPPLVLPNGYVYSTKALDEMAKKNGGKITCP 242
           F    H   +C + KE   TENPP  L   ++ S KALD ++K       CP
Sbjct: 351 FLTHFHPIFICPVLKEETTTENPPYSLACHHIISKKALDRLSKNGTITFKCP 402

>KCNA4_BOVIN (Q05037) Potassium voltage-gated channel subfamily A member 4|
           (Voltage-gated potassium channel subunit Kv1.4) (BAK4)
          Length = 660

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
 Frame = -3

Query: 478 HSASRGTAPKEDPLSLDGFRKLAEPLPFSKQ-HHSKLVCHITKELMDTENPPLVLPNGYV 302
           H  SRG     DP S  G R+   P P  K+ HH +       +LM + +   +L +   
Sbjct: 64  HHPSRGACTSHDPQSGRGSRRRRRPHPEKKKVHHRQSSFPHCSDLMPSGSEEKILRDLSE 123

Query: 301 YSTKALDEMAKKNGGKITCPRT--GEVCNYTELV 206
              +  DE  ++  G+        GE C+YT+L+
Sbjct: 124 EDEEEDDEEDEEEEGRFYYSEEDHGEECSYTDLL 157

>IAA8_ORYSA (Q6Z5M0) Auxin-responsive protein IAA8 (Indoleacetic acid-induced|
           protein 8)
          Length = 205

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
 Frame = -1

Query: 519 EHLPASRPDSSQDSILLRGELPPKKTPCRWTASGNSQSRCPSQSSTTRSLSAT*PRSSWT 340
           E LPAS   SS DS    GELP   T     ++ +S  R P+ ++  RSL +T  R   T
Sbjct: 9   ESLPAS---SSMDSC--SGELPTTTTTAPAQSTASSGCRPPATAAKRRSLISTDLRLGLT 63

Query: 339 -----------PRIHRSSCPTATFIAPR 289
                      P   RSS  TAT  A R
Sbjct: 64  LSSVVHIDGNNPSTPRSSLTTATVTADR 91

>ZN265_RAT (O35986) Zinc finger protein 265 (Zinc finger, splicing)|
          Length = 332

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 25/79 (31%), Positives = 37/79 (46%)
 Frame = -1

Query: 417 NSQSRCPSQSSTTRSLSAT*PRSSWTPRIHRSSCPTATFIAPRPLMRWPRRTGARSHAQG 238
           N +SR  S+SS +RS S             RSS P+++    R   R    + +RSH+  
Sbjct: 199 NRRSRSKSRSSHSRSSS-------------RSSSPSSSRSRSRSRSRSSSSSQSRSHSGS 245

Query: 237 QEKSATTPSSSRLTSHDLG 181
           +E S +  S SR +S   G
Sbjct: 246 REHSRSRGSKSRSSSRSTG 264

>ZN265_MOUSE (Q9R020) Zinc finger protein 265 (Zinc finger, splicing) (Fragment)|
          Length = 326

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 25/79 (31%), Positives = 37/79 (46%)
 Frame = -1

Query: 417 NSQSRCPSQSSTTRSLSAT*PRSSWTPRIHRSSCPTATFIAPRPLMRWPRRTGARSHAQG 238
           N +SR  S+SS +RS S             RSS P+++    R   R    + +RSH+  
Sbjct: 199 NRRSRSKSRSSHSRSSS-------------RSSSPSSSRSRSRSRSRSSSSSQSRSHSGS 245

Query: 237 QEKSATTPSSSRLTSHDLG 181
           +E S +  S SR +S   G
Sbjct: 246 REHSRSRGSKSRSSSRSTG 264

>LEU2_BUCRP (P48573) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 471

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 399 GSGSASFRKPSSDKGSSLGAVPLEAEWSLESCQACLQVN 515
           GSG+ + +KP+  +G     +    EW L  C  CL +N
Sbjct: 378 GSGTGTVKKPAEKEGLDKIFIDAGFEWRLPGCSMCLGMN 416

>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein|
           stubble-stubbloid) [Contains: Serine proteinase stubble
           non-catalytic chain; Serine proteinase stubble catalytic
           chain]
          Length = 787

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -1

Query: 423 SGNSQSRCPSQSSTTRSLSAT*PRSSWTPRIHRSSCPTAT---FIAPRPLMRWPRRTGAR 253
           + +S S  PS  STT + S+T   ++ T    R++ PT T       +P   + R T A 
Sbjct: 395 AASSSSHWPS--STTSTTSSTTSTTTTTTTTRRTTTPTTTTRRTTTNKPTRPYQRPTTAT 452

Query: 252 SHAQGQEKSATTPSSSR 202
           S +     S+ TP+++R
Sbjct: 453 SSSSTSTTSSKTPTTTR 469

>OTC_PASMU (P57876) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)|
          Length = 334

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -3

Query: 325 LVLPNGYVYSTKALDE---MAKKNGGKITCPRTGE 230
           LV P  Y    K LDE   MAKK G KITC    E
Sbjct: 187 LVAPKAYWPEQKLLDEVAEMAKKTGAKITCTENVE 221

>GPR37_MOUSE (Q9QY42) Probable G-protein coupled receptor 37 precursor|
          Length = 600

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
 Frame = -1

Query: 456 PPKKTPCRWT--------ASGNSQSRCPSQSSTTRSLSAT*PRSSWTPRIHRSSCPTATF 301
           PP K P  W          SG+ + R P+        S     SS    I +S    +  
Sbjct: 109 PPTKPPSAWRWKSAQGKEPSGHLRRRDPTDPQLFFPTSEGGEMSSKRDGIPQSRQEHSVK 168

Query: 300 IAPRPLMRWPRRTGARSHAQ 241
             PR L  WPRRTG    +Q
Sbjct: 169 TEPRDLFYWPRRTGQLQDSQ 188

>TRIPB_HUMAN (Q15643) Thyroid receptor-interacting protein 11 (TRIP-11)|
            (Golgi-associated microtubule-binding protein 210)
            (GMAP-210) (Trip230) (Clonal evolution related gene on
            chromosome 14)
          Length = 1979

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = -3

Query: 493  QLSRLHSASRGTAPKEDPLSLDGFRKLA---EPLPFSKQHHSKLVCHITKELMDTENPPL 323
            +L RL      TAP  DP +LD   +LA     L   K+H  + + H  K + D     +
Sbjct: 868  ELERLREEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKM 927

Query: 322  VLPNGYVYSTKALDE 278
             L        K +DE
Sbjct: 928  QLLQSLQEQKKEMDE 942

>ZN265_HUMAN (O95218) Zinc finger protein 265 (Zinc finger, splicing)|
          Length = 337

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = -1

Query: 417 NSQSRCPSQSSTTRSLSAT*PRSSWTPRIHRSSCPTATFIAPRPLMRWPRRTGARSHAQG 238
           N +SR  S+SS +RS S             RSS P+++    R   R    + +RS +  
Sbjct: 199 NRRSRSKSRSSHSRSSS-------------RSSSPSSSRSRSRSRSRSSSSSQSRSRSSS 245

Query: 237 QEKSATTPSSSRLTSHDLG 181
           +E+S +  S SR +S   G
Sbjct: 246 RERSRSRGSKSRSSSRSTG 264

>YEHM_ECOLI (P33349) Hypothetical protein yehM|
          Length = 759

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 415 LAEPLPFSKQHHSKLVCHITKELMDTENPPLVLPNGYVYSTKALDEM 275
           ++EPL    +HHS     + K L++++ P  VL  G       +DE+
Sbjct: 1   MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRVDEL 47

>FBX27_MACFA (Q9N0C8) F-box only protein 27|
          Length = 280

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 24/114 (21%)
 Frame = -1

Query: 522 AEHLPASRPDSSQDSILLRGELPPK------------------KTPCR-WTASGNSQSR- 403
           A  +PA  P+S  +  L   +LPP+                  +  CR W A  + Q+  
Sbjct: 10  AARVPAPEPESEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALVDGQALW 69

Query: 402 ----CPSQSSTTRSLSAT*PRSSWTPRIHRSSCPTATFIAPRPLMRWPRRTGAR 253
                   S+T R+L     RS  +P  +   CP   F A RP+ R P   G R
Sbjct: 70  LLILARDHSATGRALLHL-ARSCQSPARNARPCPLGRFCARRPIGRNPCGQGLR 122

>GPR37_RAT (Q9QYC6) Probable G-protein coupled receptor 37 precursor|
           (G-protein coupled receptor CNS1)
          Length = 603

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
 Frame = -1

Query: 456 PPKKTPCRWT--------ASGNSQSRCPSQSSTTRSLSAT*PRSSWTPRIHRSSCPTATF 301
           PP K P  W          SG+   R P+ S   R  S     SS    I + S   +  
Sbjct: 109 PPTKPPGAWRWKGAQGKEPSGHLGRREPTDSQLFRQTSERGEMSSKRDEIPQGSQEHSVK 168

Query: 300 IAPRP--LMRWPRRTG 259
             P P  L  WPR+TG
Sbjct: 169 TEPEPRDLFYWPRKTG 184

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
 Frame = -1

Query: 525 VAEHLPASRPDSSQDSILLRGE--LPPKKTPCRWTASGNSQSRCPSQSSTTRSLSAT*PR 352
           VA    A  P+  +D + L G+   PP++ P R  A   +  R    SS++ S S +   
Sbjct: 300 VAVETVARGPEKDEDGLGLAGDGGAPPQRQPRRRRAGEGALRRGRGFSSSSSSGSDS--- 356

Query: 351 SSWTPRIHRSSCPTATFIAPRPLMRWPRRTGARSHAQGQEKSATTPSSSRLTSHDLG--- 181
                       P  +  APR      RR+ + S +     S+++ SSS     D G   
Sbjct: 357 ---------DLSPARSPSAPRAPAAAARRSASSSSSSSSSSSSSSSSSSSEGEEDEGVRP 407

Query: 180 DAVVARLG 157
            A +AR G
Sbjct: 408 GAPLARAG 415

>VE2_HPV20 (P50766) Regulatory protein E2|
          Length = 497

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 24/89 (26%), Positives = 44/89 (49%)
 Frame = -1

Query: 468 RGELPPKKTPCRWTASGNSQSRCPSQSSTTRSLSAT*PRSSWTPRIHRSSCPTATFIAPR 289
           R E P +++  R+ +   S+ R   ++ TT + + T      +P    +S  + T    R
Sbjct: 289 RSESPRRRS--RYRSRSGSRGRVALRAITTTTTTTTRRAGGGSP----TSTSSTTSQRSR 342

Query: 288 PLMRWPRRTGARSHAQGQEKSATTPSSSR 202
            L R   R G+R  A+G+  S+T+P+ S+
Sbjct: 343 QL-RGGGRGGSRQRARGRRSSSTSPTPSK 370

>ACHA4_HUMAN (P43681) Neuronal acetylcholine receptor protein, alpha-4 subunit|
           precursor
          Length = 627

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 462 ELPP--KKTPCRWTASGNSQSRCPSQSSTTRSLSAT*PRSSWTPRIHRS 322
           ELPP  + +PC+ T      S  PS +  TRS  A  P    +P + R+
Sbjct: 519 ELPPPDQPSPCKCTCKKEPSSVSPSATVKTRSTKAPPPHLPLSPALTRA 567

>BTLA_RAT (Q6PNM1) B- and T-lymphocyte attenuator precursor (B- and|
           T-lymphocyte-associated protein) (CD272 antigen)
          Length = 308

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 354 RSSWTPRIHRSSCPTATFIAPRPLMRWPRRTGAR 253
           RS+WT  + +  CP  T+   RP + W +  G R
Sbjct: 52  RSAWTGELFKIECP-VTYCVHRPNVTWCKHNGTR 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,482,852
Number of Sequences: 219361
Number of extensions: 1804804
Number of successful extensions: 5836
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5831
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)