ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7j24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450590.1| Oryza sativa (japonica cultivar-group), mRNA 266 8e-68
2dbj|AK105521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 8e-68
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
4dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
5gb|AY108781.1| Zea mays PCO122043 mRNA sequence 139 1e-29
6ref|NM_117475.2| Arabidopsis thaliana unknown protein AT4G14000 ... 50 0.009
7emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA ... 50 0.009
8emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, ... 50 0.009
9gb|AY114714.1| Arabidopsis thaliana unknown protein (At4g14000) ... 50 0.009
10gb|AY072417.1| Arabidopsis thaliana unknown protein (At4g14000) ... 50 0.009
11emb|BX827894.1|CNS0A30D Arabidopsis thaliana Full-length cDNA Co... 50 0.009
12emb|BX829113.1|CNS0A2AY Arabidopsis thaliana Full-length cDNA Co... 50 0.009
13gb|AY086588.1| Arabidopsis thaliana clone 25991 mRNA, complete s... 50 0.009
14emb|BX829267.1|CNS0A4DH Arabidopsis thaliana Full-length cDNA Co... 48 0.037
15emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in... 46 0.14
16emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 i... 46 0.14
17gb|AC130827.3| Mus musculus BAC clone RP23-405I7 from chromosome... 44 0.57
18emb|CR352245.9| Zebrafish DNA sequence from clone DKEY-153L11 in... 44 0.57
19emb|BX511161.6| Zebrafish DNA sequence from clone DKEY-248G17 in... 44 0.57
20gb|AC148995.2| Medicago truncatula chromosome 7 BAC clone mth2-4... 44 0.57
21gb|AC126957.4| Rattus norvegicus 1 BAC CH230-12B13 (Children's H... 42 2.3
22emb|CR550302.15| Zebrafish DNA sequence from clone DKEY-145I3 in... 42 2.3
23emb|BX957333.8| Zebrafish DNA sequence from clone CH211-10M5 in ... 42 2.3
24emb|BX572647.10| Zebrafish DNA sequence from clone CH211-149N1 i... 42 2.3
25gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6... 42 2.3
26gb|AF039714.1| Caenorhabditis elegans cosmid T13E5, complete seq... 40 8.9
27gb|AY868868.1| Uncultured Nitrospirae bacterium clone I3K-0683 1... 40 8.9
28gb|AC144673.3| Mus musculus BAC clone RP23-40K14 from chromosome... 40 8.9
29gb|AC113470.14| Mus musculus chromosome 9, clone RP23-262N17, co... 40 8.9
30gb|U40955.1| Caenorhabditis elegans cosmid F48B9, complete sequence 40 8.9
31emb|Z93942.1|HS230I19 Human DNA sequence from clone RP1-230I19 o... 40 8.9
32gb|AC106914.5| Rattus norvegicus BAC CH230-12M19 (Children's Ho... 40 8.9
33gb|AC093817.3| Homo sapiens BAC clone RP11-364P22 from 4, comple... 40 8.9
34dbj|AK139060.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 8.9
35gb|U43283.1| Caenorhabditis elegans cosmid T25G12, complete sequ... 40 8.9
36gb|AC159200.2| Mus musculus BAC clone RP23-366K13 from chromosom... 40 8.9
37gb|AC154437.2| Mus musculus BAC clone RP24-194D17 from chromosom... 40 8.9
38gb|AY835543.1| Halimeda incrassata voucher H.0652 ribosomal prot... 40 8.9
39gb|AY835542.1| Halimeda incrassata voucher H.0651 ribosomal prot... 40 8.9
40gb|AY835541.1| Halimeda incrassata voucher H.0650 ribosomal prot... 40 8.9
41gb|AY835540.1| Halimeda incrassata voucher H.0649 ribosomal prot... 40 8.9
42gb|AY835539.1| Halimeda incrassata voucher HV763 ribosomal prote... 40 8.9
43gb|AY835538.1| Halimeda incrassata voucher HV636 ribosomal prote... 40 8.9
44gb|AY835537.1| Halimeda incrassata voucher HV629 ribosomal prote... 40 8.9
45gb|AY835536.1| Halimeda incrassata voucher HV231 ribosomal prote... 40 8.9
46gb|AY835535.1| Halimeda incrassata voucher HV149 ribosomal prote... 40 8.9
47gb|AY835533.1| Halimeda incrassata voucher HV144 ribosomal prote... 40 8.9
48gb|AY835530.1| Halimeda incrassata voucher H.0019 ribosomal prot... 40 8.9
49gb|AY835529.1| Halimeda incrassata voucher H.0016 ribosomal prot... 40 8.9
50emb|BX649332.3| Zebrafish DNA sequence from clone CH211-243P21 i... 40 8.9
51gb|AC005971.5|AC005971 Homo sapiens chromosome 17, clone hRPK.65... 40 8.9
52emb|BX469932.7| Mouse DNA sequence from clone RP23-391L6 on chro... 40 8.9
53emb|AJ009616.3|HSAJ9616 Homo sapiens chromosome 17 sequence from... 40 8.9 
>ref|XM_450590.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1369

 Score =  266 bits (134), Expect = 8e-68
 Identities = 233/266 (87%)
 Strand = Plus / Minus

                                                                        
Query: 154  ctagtctacttgaatgagaatttccaaacctccctaacattggatgatccatcagtaact 213
            |||||||| ||||| || |||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 1152 ctagtctatttgaacgataatttccaaacctcccgaacattcgatgatccatcagcaact 1093

                                                                        
Query: 214  tcagcaagcaggtccgactgcagggcaccatcttctgtaaccaagcgtagaaattgcctt 273
            |||||||| ||||| ||||||| ||| |||||||||||||||||||| | ||| ||||||
Sbjct: 1092 tcagcaagtaggtcggactgcatggccccatcttctgtaaccaagcgaacaaagtgcctt 1033

                                                                        
Query: 274  gtgccaccacctacaccaaagtaatgctttttccctgccatataaactacaccactaggg 333
            |||||||||||||| || |||||||||||||| || ||||| ||||||| ||| | ||||
Sbjct: 1032 gtgccaccacctactccgaagtaatgctttttacccgccatgtaaactatacctccaggg 973

                                                                        
Query: 334  tagtgtaagcacttcttgatgagcctgtagagactaggaagtgaatccaatgcataaaca 393
            ||| | | ||||||||||||||||||||||||| |||| || |||   | |||||| |||
Sbjct: 972  tagcgcaggcacttcttgatgagcctgtagagattagggagggaagatactgcatagaca 913

                                      
Query: 394  gtctcagccatcaggatgatatcata 419
            ||||||||||| ||||||||||||||
Sbjct: 912  gtctcagccataaggatgatatcata 887



 Score =  151 bits (76), Expect = 3e-33
 Identities = 173/204 (84%), Gaps = 1/204 (0%)
 Strand = Plus / Minus

                                                                       
Query: 451 ttggttgttttatcctggacagcatctccgcgaagaagtaacttgtcgatttcaccccaa 510
           ||||||| ||||||| || |||||||||| |||||||| |   |||| ||||| | ||| 
Sbjct: 855 ttggttgatttatccaggtcagcatctccacgaagaagcagactgtcaatttcgctccag 796

                                                                       
Query: 511 tcaccagcataaaaaccaacactcctagatgtgaatgttccttgagatgattccttgaac 570
           ||||||||| | ||||||||||| | |||||| ||  || ||| |||||||||||| || 
Sbjct: 795 tcaccagcaaagaaaccaacactaccagatgtaaacttttcttcagatgattccttcaat 736

                                                                       
Query: 571 agattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcctgg 630
           |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 735 agattagcctttacatttggtatggtaaggcatctaaggacctcagcattgaaatcttgg 676

                                   
Query: 631 aaagtgaactagaccagcaccctt 654
            ||||| |||||| ||||||||||
Sbjct: 675 -aagtggactagaacagcaccctt 653
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>dbj|AK105521.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F10, full
            insert sequence
          Length = 1368

 Score =  266 bits (134), Expect = 8e-68
 Identities = 233/266 (87%)
 Strand = Plus / Minus

                                                                        
Query: 154  ctagtctacttgaatgagaatttccaaacctccctaacattggatgatccatcagtaact 213
            |||||||| ||||| || |||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 1151 ctagtctatttgaacgataatttccaaacctcccgaacattcgatgatccatcagcaact 1092

                                                                        
Query: 214  tcagcaagcaggtccgactgcagggcaccatcttctgtaaccaagcgtagaaattgcctt 273
            |||||||| ||||| ||||||| ||| |||||||||||||||||||| | ||| ||||||
Sbjct: 1091 tcagcaagtaggtcggactgcatggccccatcttctgtaaccaagcgaacaaagtgcctt 1032

                                                                        
Query: 274  gtgccaccacctacaccaaagtaatgctttttccctgccatataaactacaccactaggg 333
            |||||||||||||| || |||||||||||||| || ||||| ||||||| ||| | ||||
Sbjct: 1031 gtgccaccacctactccgaagtaatgctttttacccgccatgtaaactatacctccaggg 972

                                                                        
Query: 334  tagtgtaagcacttcttgatgagcctgtagagactaggaagtgaatccaatgcataaaca 393
            ||| | | ||||||||||||||||||||||||| |||| || |||   | |||||| |||
Sbjct: 971  tagcgcaggcacttcttgatgagcctgtagagattagggagggaagatactgcatagaca 912

                                      
Query: 394  gtctcagccatcaggatgatatcata 419
            ||||||||||| ||||||||||||||
Sbjct: 911  gtctcagccataaggatgatatcata 886



 Score =  151 bits (76), Expect = 3e-33
 Identities = 173/204 (84%), Gaps = 1/204 (0%)
 Strand = Plus / Minus

                                                                       
Query: 451 ttggttgttttatcctggacagcatctccgcgaagaagtaacttgtcgatttcaccccaa 510
           ||||||| ||||||| || |||||||||| |||||||| |   |||| ||||| | ||| 
Sbjct: 854 ttggttgatttatccaggtcagcatctccacgaagaagcagactgtcaatttcgctccag 795

                                                                       
Query: 511 tcaccagcataaaaaccaacactcctagatgtgaatgttccttgagatgattccttgaac 570
           ||||||||| | ||||||||||| | |||||| ||  || ||| |||||||||||| || 
Sbjct: 794 tcaccagcaaagaaaccaacactaccagatgtaaacttttcttcagatgattccttcaat 735

                                                                       
Query: 571 agattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcctgg 630
           |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 734 agattagcctttacatttggtatggtaaggcatctaaggacctcagcattgaaatcttgg 675

                                   
Query: 631 aaagtgaactagaccagcaccctt 654
            ||||| |||||| ||||||||||
Sbjct: 674 -aagtggactagaacagcaccctt 652
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  149 bits (75), Expect = 1e-32
 Identities = 172/203 (84%), Gaps = 1/203 (0%)
 Strand = Plus / Minus

                                                                            
Query: 451      ttggttgttttatcctggacagcatctccgcgaagaagtaacttgtcgatttcaccccaa 510
                ||||||| ||||||| || |||||||||| |||||||| |   |||| ||||| | ||| 
Sbjct: 11655644 ttggttgatttatccaggtcagcatctccacgaagaagcagactgtcaatttcgctccag 11655585

                                                                            
Query: 511      tcaccagcataaaaaccaacactcctagatgtgaatgttccttgagatgattccttgaac 570
                ||||||||| | ||||||||||| | |||||| ||  || ||| |||||||||||| || 
Sbjct: 11655584 tcaccagcaaagaaaccaacactaccagatgtaaacttttcttcagatgattccttcaat 11655525

                                                                            
Query: 571      agattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcctgg 630
                |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 11655524 agattagcctttacatttggtatggtaaggcatctaaggacctcagcattgaaatcttgg 11655465

                                       
Query: 631      aaagtgaactagaccagcaccct 653
                 ||||| |||||| |||||||||
Sbjct: 11655464 -aagtggactagaacagcaccct 11655443



 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                            
Query: 240      accatcttctgtaaccaagcgtagaaattgccttgtgccaccacctacaccaaagtaatg 299
                ||||||||||||||||||||| | ||| |||||||||||||||||||| || ||||||||
Sbjct: 11655948 accatcttctgtaaccaagcgaacaaagtgccttgtgccaccacctactccgaagtaatg 11655889

                                                     
Query: 300      ctttttccctgccatataaactacaccactagggtag 336
                |||||| || ||||| ||||||| ||| | |||||||
Sbjct: 11655888 ctttttacccgccatgtaaactatacctccagggtag 11655852



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                            
Query: 154      ctagtctacttgaatgagaatttccaaacctccctaacattggatgatccatcagtaact 213
                |||||||| ||||| || |||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 11656504 ctagtctatttgaacgataatttccaaacctcccgaacattcgatgatccatcagcaact 11656445

                                      
Query: 214      tcagcaagcaggtccgactgca 235
                |||||||| ||||| |||||||
Sbjct: 11656444 tcagcaagtaggtcggactgca 11656423



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                            
Query: 345      cttcttgatgagcctgtagagactaggaagtgaatccaatgcataaacagtctcagccat 404
                |||||||||||||||||||||| |||| || |||   | |||||| ||||||||||||||
Sbjct: 11655750 cttcttgatgagcctgtagagattagggagggaagatactgcatagacagtctcagccat 11655691

                               
Query: 405      caggatgatatcata 419
                 ||||||||||||||
Sbjct: 11655690 aaggatgatatcata 11655676
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0711F01
          Length = 193091

 Score =  149 bits (75), Expect = 1e-32
 Identities = 172/203 (84%), Gaps = 1/203 (0%)
 Strand = Plus / Minus

                                                                         
Query: 451   ttggttgttttatcctggacagcatctccgcgaagaagtaacttgtcgatttcaccccaa 510
             ||||||| ||||||| || |||||||||| |||||||| |   |||| ||||| | ||| 
Sbjct: 90278 ttggttgatttatccaggtcagcatctccacgaagaagcagactgtcaatttcgctccag 90219

                                                                         
Query: 511   tcaccagcataaaaaccaacactcctagatgtgaatgttccttgagatgattccttgaac 570
             ||||||||| | ||||||||||| | |||||| ||  || ||| |||||||||||| || 
Sbjct: 90218 tcaccagcaaagaaaccaacactaccagatgtaaacttttcttcagatgattccttcaat 90159

                                                                         
Query: 571   agattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcctgg 630
             |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 90158 agattagcctttacatttggtatggtaaggcatctaaggacctcagcattgaaatcttgg 90099

                                    
Query: 631   aaagtgaactagaccagcaccct 653
              ||||| |||||| |||||||||
Sbjct: 90098 -aagtggactagaacagcaccct 90077



 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                         
Query: 240   accatcttctgtaaccaagcgtagaaattgccttgtgccaccacctacaccaaagtaatg 299
             ||||||||||||||||||||| | ||| |||||||||||||||||||| || ||||||||
Sbjct: 90582 accatcttctgtaaccaagcgaacaaagtgccttgtgccaccacctactccgaagtaatg 90523

                                                  
Query: 300   ctttttccctgccatataaactacaccactagggtag 336
             |||||| || ||||| ||||||| ||| | |||||||
Sbjct: 90522 ctttttacccgccatgtaaactatacctccagggtag 90486



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                         
Query: 154   ctagtctacttgaatgagaatttccaaacctccctaacattggatgatccatcagtaact 213
             |||||||| ||||| || |||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 91138 ctagtctatttgaacgataatttccaaacctcccgaacattcgatgatccatcagcaact 91079

                                   
Query: 214   tcagcaagcaggtccgactgca 235
             |||||||| ||||| |||||||
Sbjct: 91078 tcagcaagtaggtcggactgca 91057



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 345   cttcttgatgagcctgtagagactaggaagtgaatccaatgcataaacagtctcagccat 404
             |||||||||||||||||||||| |||| || |||   | |||||| ||||||||||||||
Sbjct: 90384 cttcttgatgagcctgtagagattagggagggaagatactgcatagacagtctcagccat 90325

                            
Query: 405   caggatgatatcata 419
              ||||||||||||||
Sbjct: 90324 aaggatgatatcata 90310
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>gb|AY108781.1| Zea mays PCO122043 mRNA sequence
          Length = 880

 Score =  139 bits (70), Expect = 1e-29
 Identities = 256/318 (80%)
 Strand = Plus / Minus

                                                                       
Query: 316 taaactacaccactagggtagtgtaagcacttcttgatgagcctgtagagactaggaagt 375
           ||||| ||||| | ||||||| | ||||||||||||||||||||||||||| | ||||| 
Sbjct: 878 taaaccacacccccagggtagcgcaagcacttcttgatgagcctgtagagatttggaaga 819

                                                                       
Query: 376 gaatccaatgcataaacagtctcagccatcaggatgatatcataacctctatacccttca 435
            ||   |  || |||||||||||||||||||||||||||||||||||  || ||  || |
Sbjct: 818 caagataccgcgtaaacagtctcagccatcaggatgatatcataaccattacacatttta 759

                                                                       
Query: 436 ttttctgtttgaagattggttgttttatcctggacagcatctccgcgaagaagtaacttg 495
             |||||| | |  | ||| |||||| || ||  ||||||| |||| ||| |||| ||| 
Sbjct: 758 ccttctgtatcaccactggctgttttgtcttgctcagcatccccgcaaagtagtagctta 699

                                                                       
Query: 496 tcgatttcaccccaatcaccagcataaaaaccaacactcctagatgtgaatgttccttga 555
           || ||||||| ||||||||||||| | ||||||||| ||  | ||||  |||||||||  
Sbjct: 698 tccatttcactccaatcaccagcaaagaaaccaacaatcggacatgtacatgttccttct 639

                                                                       
Query: 556 gatgattccttgaacagattagcttttacatttgggatggtaaggcacctaagaacctca 615
           | ||| |||||||| |||||  ||||||||||||| || || | ||||||||| ||||| 
Sbjct: 638 ggtgaatccttgaaaagattgacttttacatttggtatagtcaagcacctaagcacctcg 579

                             
Query: 616 gcattgaaatcctggaaa 633
           ||||||||||| ||||||
Sbjct: 578 gcattgaaatcttggaaa 561
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>ref|NM_117475.2| Arabidopsis thaliana unknown protein AT4G14000 mRNA, complete cds
          Length = 1227

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 569 acagattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcct 628
           |||||||||| || | ||| || ||||| || || | |||||||||||||||||| ||||
Sbjct: 521 acagattagcattcagattcggaatggtgagacatcgaagaacctcagcattgaagtcct 462

                
Query: 629 ggaaa 633
           |||||
Sbjct: 461 ggaaa 457
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>emb|Z97335.2|ATFCA0 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 0
          Length = 200576

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 569   acagattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcct 628
             |||||||||| || | ||| || ||||| || || | |||||||||||||||||| ||||
Sbjct: 49663 acagattagcattcagattcggaatggtgagacatcgaagaacctcagcattgaagtcct 49604

                  
Query: 629   ggaaa 633
             |||||
Sbjct: 49603 ggaaa 49599
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>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37
          Length = 199667

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                          
Query: 569    acagattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcct 628
              |||||||||| || | ||| || ||||| || || | |||||||||||||||||| ||||
Sbjct: 183878 acagattagcattcagattcggaatggtgagacatcgaagaacctcagcattgaagtcct 183819

                   
Query: 629    ggaaa 633
              |||||
Sbjct: 183818 ggaaa 183814
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>gb|AY114714.1| Arabidopsis thaliana unknown protein (At4g14000) mRNA, complete cds
          Length = 1067

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 569 acagattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcct 628
           |||||||||| || | ||| || ||||| || || | |||||||||||||||||| ||||
Sbjct: 487 acagattagcattcagattcggaatggtgagacatcgaagaacctcagcattgaagtcct 428

                
Query: 629 ggaaa 633
           |||||
Sbjct: 427 ggaaa 423
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>gb|AY072417.1| Arabidopsis thaliana unknown protein (At4g14000) mRNA, complete cds
          Length = 1100

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 569 acagattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcct 628
           |||||||||| || | ||| || ||||| || || | |||||||||||||||||| ||||
Sbjct: 509 acagattagcattcagattcggaatggtgagacatcgaagaacctcagcattgaagtcct 450

                
Query: 629 ggaaa 633
           |||||
Sbjct: 449 ggaaa 445
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>emb|BX827894.1|CNS0A30D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH32ZD05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1194

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 569 acagattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcct 628
           |||||||||| || | ||| || ||||| || || | |||||||||||||||||| ||||
Sbjct: 483 acagattagcattcagattcggaatggtgagacatcgaagaacctcagcattgaagtcct 424

                
Query: 629 ggaaa 633
           |||||
Sbjct: 423 ggaaa 419
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>emb|BX829113.1|CNS0A2AY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL71ZA09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1138

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 569 acagattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcct 628
           |||||||||| || | ||| || ||||| || || | |||||||||||||||||| ||||
Sbjct: 501 acagattagcattcagattcggaatggtgagacatcgaagaacctcagcattgaagtcct 442

                
Query: 629 ggaaa 633
           |||||
Sbjct: 441 ggaaa 437
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>gb|AY086588.1| Arabidopsis thaliana clone 25991 mRNA, complete sequence
          Length = 1227

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 569 acagattagcttttacatttgggatggtaaggcacctaagaacctcagcattgaaatcct 628
           |||||||||| || | ||| || ||||| || || | |||||||||||||||||| ||||
Sbjct: 521 acagattagcattcagattcggaatggtgagacatcgaagaacctcagcattgaagtcct 462

                
Query: 629 ggaaa 633
           |||||
Sbjct: 461 ggaaa 457
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>emb|BX829267.1|CNS0A4DH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL86ZA09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1076

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 606 aagaacctcagcattgaaatcctggaaa 633
           |||||||||||||||||| |||||||||
Sbjct: 470 aagaacctcagcattgaagtcctggaaa 443
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>emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in linkage group 2,
             complete sequence
          Length = 175342

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 572   gattagcttttacatttgggatg 594
             |||||||||||||||||||||||
Sbjct: 70730 gattagcttttacatttgggatg 70752
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>emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 in linkage group 20,
             complete sequence
          Length = 174999

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 572   gattagcttttacatttgggatg 594
             |||||||||||||||||||||||
Sbjct: 70738 gattagcttttacatttgggatg 70760
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>gb|AC130827.3| Mus musculus BAC clone RP23-405I7 from chromosome 13, complete sequence
          Length = 212140

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 567   gaacagattagcttttacatttgggatggt 596
             ||||||| |||||||| |||||||||||||
Sbjct: 76582 gaacagaatagctttttcatttgggatggt 76553
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>emb|CR352245.9| Zebrafish DNA sequence from clone DKEY-153L11 in linkage group 16,
             complete sequence
          Length = 136903

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 548   ttccttgagatgattccttgaa 569
             ||||||||||||||||||||||
Sbjct: 34544 ttccttgagatgattccttgaa 34565
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>emb|BX511161.6| Zebrafish DNA sequence from clone DKEY-248G17 in linkage group 16,
             complete sequence
          Length = 101801

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 548   ttccttgagatgattccttgaa 569
             ||||||||||||||||||||||
Sbjct: 93663 ttccttgagatgattccttgaa 93642
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>gb|AC148995.2| Medicago truncatula chromosome 7 BAC clone mth2-49l23, complete
             sequence
          Length = 128239

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 166   aatgagaatttccaaacctccc 187
             ||||||||||||||||||||||
Sbjct: 46701 aatgagaatttccaaacctccc 46680
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>gb|AC126957.4| Rattus norvegicus 1 BAC CH230-12B13 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 215911

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    tctacttgaatgagaatttcc 178
              |||||||||||||||||||||
Sbjct: 183259 tctacttgaatgagaatttcc 183279
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>emb|CR550302.15| Zebrafish DNA sequence from clone DKEY-145I3 in linkage group 11,
             complete sequence
          Length = 202610

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    cataaacagtcaacttgaaag 41
             |||||||||||||||||||||
Sbjct: 28148 cataaacagtcaacttgaaag 28128
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>emb|BX957333.8| Zebrafish DNA sequence from clone CH211-10M5 in linkage group 25,
             complete sequence
          Length = 170161

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    cataaacagtcaacttgaaag 41
             |||||||||||||||||||||
Sbjct: 54980 cataaacagtcaacttgaaag 54960
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>emb|BX572647.10| Zebrafish DNA sequence from clone CH211-149N1 in linkage group 10,
             complete sequence
          Length = 190639

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    tgaaagtgaaactaacagtgc 56
             |||||||||||||||||||||
Sbjct: 77152 tgaaagtgaaactaacagtgc 77132
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>gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6, complete sequence
          Length = 197070

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 143    cagaggctatgctagtctacttgaa 167
              |||||||| ||||||||||||||||
Sbjct: 162257 cagaggctttgctagtctacttgaa 162233
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>gb|AF039714.1| Caenorhabditis elegans cosmid T13E5, complete sequence
          Length = 9618

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 433  tcattttctgtttgaagatt 452
            ||||||||||||||||||||
Sbjct: 2580 tcattttctgtttgaagatt 2561
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>gb|AY868868.1| Uncultured Nitrospirae bacterium clone I3K-0683 16S ribosomal RNA
           gene, partial sequence
          Length = 437

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 497 cgatttcaccccaatcacca 516
           ||||||||||||||||||||
Sbjct: 400 cgatttcaccccaatcacca 381
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>gb|AC144673.3| Mus musculus BAC clone RP23-40K14 from chromosome 14, complete sequence
          Length = 162333

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    actaaaccaaggctgacact 95
             ||||||||||||||||||||
Sbjct: 57525 actaaaccaaggctgacact 57506
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>gb|AC113470.14| Mus musculus chromosome 9, clone RP23-262N17, complete sequence
          Length = 202838

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   ttccttgagatgattccttgaaca 571
             |||||||||||||| |||||||||
Sbjct: 61967 ttccttgagatgatgccttgaaca 61944



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   ttccttgagatgattccttgaaca 571
             |||||||||||||| |||||||||
Sbjct: 61839 ttccttgagatgatgccttgaaca 61816



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   ttccttgagatgattccttgaaca 571
             |||||||||||||| |||||||||
Sbjct: 61774 ttccttgagatgatgccttgaaca 61751



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   ttccttgagatgattccttgaaca 571
             |||||||||||||| |||||||||
Sbjct: 61709 ttccttgagatgatgccttgaaca 61686



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   ttccttgagatgattccttgaaca 571
             |||||||||||||| |||||||||
Sbjct: 61644 ttccttgagatgatgccttgaaca 61621



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   ttccttgagatgattccttgaaca 571
             |||||||||||||| |||||||||
Sbjct: 61579 ttccttgagatgatgccttgaaca 61556



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   ttccttgagatgattccttgaaca 571
             |||||||||||||| |||||||||
Sbjct: 61516 ttccttgagatgatgccttgaaca 61493
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>gb|U40955.1| Caenorhabditis elegans cosmid F48B9, complete sequence
          Length = 40014

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    cagtcaacttgaaagtgaaa 46
             ||||||||||||||||||||
Sbjct: 14789 cagtcaacttgaaagtgaaa 14770
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>emb|Z93942.1|HS230I19 Human DNA sequence from clone RP1-230I19 on chromosome 20q12-13.12
             Contains part of the PTPRT gene for protein tyrosine
             phosphatase receptor type T,  genomic marker D20S858, a ca
             repeat polymorphism, ESTs, STS and GSSs, complete sequence
          Length = 144201

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ccagtatagagccaagtaca 118
             ||||||||||||||||||||
Sbjct: 18154 ccagtatagagccaagtaca 18173
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>gb|AC106914.5| Rattus norvegicus  BAC CH230-12M19 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 235005

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 546    tgttccttgagatgattcct 565
              ||||||||||||||||||||
Sbjct: 184510 tgttccttgagatgattcct 184491
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>gb|AC093817.3| Homo sapiens BAC clone RP11-364P22 from 4, complete sequence
          Length = 183186

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    agagactaggaagtgaatcc 381
              ||||||||||||||||||||
Sbjct: 173667 agagactaggaagtgaatcc 173648
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>dbj|AK139060.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730010G10 product:dachshund 1
            (Drosophila), full insert sequence
          Length = 4396

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   actaaaccaaggctgacact 95
            ||||||||||||||||||||
Sbjct: 3395 actaaaccaaggctgacact 3376
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>gb|U43283.1| Caenorhabditis elegans cosmid T25G12, complete sequence
          Length = 40161

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   cgaagaagtaacttgtcgat 500
             ||||||||||||||||||||
Sbjct: 21557 cgaagaagtaacttgtcgat 21538
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>gb|AC159200.2| Mus musculus BAC clone RP23-366K13 from chromosome 16, complete
             sequence
          Length = 143881

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   accatcttctgtaaccaagc 259
             ||||||||||||||||||||
Sbjct: 62115 accatcttctgtaaccaagc 62134
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>gb|AC154437.2| Mus musculus BAC clone RP24-194D17 from chromosome 13, complete sequence
          Length = 180558

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 621    gaaatcctggaaagtgaact 640
              ||||||||||||||||||||
Sbjct: 101677 gaaatcctggaaagtgaact 101658
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>gb|AY835543.1| Halimeda incrassata voucher H.0652 ribosomal protein S3 (rps3)
           gene, partial cds; chloroplast
          Length = 676

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 655 gcaggtccgactgcagggca 674
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>gb|AY835542.1| Halimeda incrassata voucher H.0651 ribosomal protein S3 (rps3)
           gene, partial cds; chloroplast
          Length = 681

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 655 gcaggtccgactgcagggca 674
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>gb|AY835541.1| Halimeda incrassata voucher H.0650 ribosomal protein S3 (rps3)
           gene, partial cds; chloroplast
          Length = 676

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 655 gcaggtccgactgcagggca 674
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>gb|AY835540.1| Halimeda incrassata voucher H.0649 ribosomal protein S3 (rps3)
           gene, partial cds; chloroplast
          Length = 678

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 655 gcaggtccgactgcagggca 674
to top
>gb|AY835539.1| Halimeda incrassata voucher HV763 ribosomal protein S3 (rps3) gene,
           partial cds; chloroplast
          Length = 699

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 676 gcaggtccgactgcagggca 695
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>gb|AY835538.1| Halimeda incrassata voucher HV636 ribosomal protein S3 (rps3) gene,
           partial cds; chloroplast
          Length = 699

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 676 gcaggtccgactgcagggca 695
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>gb|AY835537.1| Halimeda incrassata voucher HV629 ribosomal protein S3 (rps3) gene,
           partial cds; chloroplast
          Length = 699

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 676 gcaggtccgactgcagggca 695
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>gb|AY835536.1| Halimeda incrassata voucher HV231 ribosomal protein S3 (rps3) gene,
           partial cds; chloroplast
          Length = 699

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 676 gcaggtccgactgcagggca 695
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>gb|AY835535.1| Halimeda incrassata voucher HV149 ribosomal protein S3 (rps3) gene,
           partial cds; chloroplast
          Length = 699

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 676 gcaggtccgactgcagggca 695
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>gb|AY835533.1| Halimeda incrassata voucher HV144 ribosomal protein S3 (rps3) gene,
           partial cds; chloroplast
          Length = 699

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 676 gcaggtccgactgcagggca 695
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>gb|AY835530.1| Halimeda incrassata voucher H.0019 ribosomal protein S3 (rps3)
           gene, partial cds; chloroplast
          Length = 699

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 676 gcaggtccgactgcagggca 695
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>gb|AY835529.1| Halimeda incrassata voucher H.0016 ribosomal protein S3 (rps3)
           gene, partial cds; chloroplast
          Length = 699

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 gcaggtccgactgcagggca 240
           ||||||||||||||||||||
Sbjct: 676 gcaggtccgactgcagggca 695
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>emb|BX649332.3| Zebrafish DNA sequence from clone CH211-243P21 in linkage group 4,
             complete sequence
          Length = 122049

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   ttctgtttgaagattggttg 457
             ||||||||||||||||||||
Sbjct: 16537 ttctgtttgaagattggttg 16556
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>gb|AC005971.5|AC005971 Homo sapiens chromosome 17, clone hRPK.651_L_9, complete sequence
          Length = 192307

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 456    tgttttatcctggacagcat 475
              ||||||||||||||||||||
Sbjct: 171510 tgttttatcctggacagcat 171529
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>emb|BX469932.7| Mouse DNA sequence from clone RP23-391L6 on chromosome X, complete
             sequence
          Length = 116319

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    aagagctcataaacagtcaa 33
             ||||||||||||||||||||
Sbjct: 46158 aagagctcataaacagtcaa 46139
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>emb|AJ009616.3|HSAJ9616 Homo sapiens chromosome 17 sequence from PAC RP1-188B3 region
             D17S842-D17S953 map 17p11.2, complete sequence
          Length = 81514

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   tgttttatcctggacagcat 475
             ||||||||||||||||||||
Sbjct: 45233 tgttttatcctggacagcat 45252


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,975,303
Number of Sequences: 3902068
Number of extensions: 5975303
Number of successful extensions: 127213
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127081
Number of HSP's gapped (non-prelim): 128
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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