ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7j23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX005260.12| Zebrafish DNA sequence from clone DKEY-209F7 in linkage group 16, complete sequence Length = 197061 Score = 40.1 bits (20), Expect = 0.40 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatggagg 43 |||||||| |||||||||||||| Sbjct: 193827 atggacggacggacggatggagg 193849
>gb|AY643066.1| Tigriopus californicus clone TCS197 microsatellite sequence Length = 442 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 20 catggacggncggacggatgga 41 ||||||||| |||||||||||| Sbjct: 71 catggacggacggacggatgga 50
>gb|AC109460.3| Homo sapiens chromosome 16 clone RP11-264B17, complete sequence Length = 163424 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatggag 42 |||||||| ||||||||||||| Sbjct: 106852 atggacggacggacggatggag 106831
>gb|AY254832.1| Gorilla gorilla cytochrome c oxidase subunit VIII heart form (COX8H) pseudogene, upstream non-coding region and exon 2 Length = 3532 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 20 catggacggncggacggatgga 41 ||||||||| |||||||||||| Sbjct: 747 catggacggacggacggatgga 726
>gb|AC112166.3| Homo sapiens chromosome 16 clone CTB-134H23, complete sequence Length = 131839 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatggag 42 |||||||| ||||||||||||| Sbjct: 126423 atggacggacggacggatggag 126444
>emb|BX649570.7| Zebrafish DNA sequence from clone CH211-13L22 in linkage group 21, complete sequence Length = 157398 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatggag 42 |||||||| ||||||||||||| Sbjct: 49589 atggacggacggacggatggag 49568
>dbj|AP006566.1| Homo sapiens genomic DNA, chromosome 11 clone:CMF9-427I16, complete sequence Length = 24220 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 20 catggacggncggacggatgga 41 ||||||||| |||||||||||| Sbjct: 19995 catggacggacggacggatgga 20016
>emb|Z65637.1|HS4E3R H.sapiens CpG island DNA genomic Mse1 fragment, clone 4e3, reverse read cpg4e3.rt1d Length = 221 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatggag 42 |||||||| ||||||||||||| Sbjct: 103 atggacgggcggacggatggag 82
>emb|Z58131.1|HS2E3R H.sapiens CpG island DNA genomic Mse1 fragment, clone 2e3, reverse read cpg2e3.rt1d Length = 221 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatggag 42 |||||||| ||||||||||||| Sbjct: 103 atggacgggcggacggatggag 82
>emb|CR786562.6| Zebrafish DNA sequence from clone CH211-244H7 in linkage group 18, complete sequence Length = 144824 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Plus Query: 24 gacggncggacggatggaggat 45 ||||| |||||||||||||||| Sbjct: 54930 gacggacggacggatggaggat 54951
>emb|BX927076.9| Zebrafish DNA sequence from clone CH211-241L24 in linkage group 18, complete sequence Length = 152951 Score = 38.2 bits (19), Expect = 1.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 24 gacggncggacggatggaggat 45 ||||| |||||||||||||||| Sbjct: 89376 gacggacggacggatggaggat 89355
>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence Length = 199727 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 43188 atggacggacggacggatgga 43208
>gb|DQ223122.1| Alasmidonta heterodon microsatellite AheC5 sequence Length = 549 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 251 atggacggacggacggatgga 231
>gb|AC114434.4| Rattus norvegicus 1 BAC CH230-210C18 (Children's Hospital Oakland Research Institute) complete sequence Length = 127883 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 68204 atggacggacggacggatgga 68184
>gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete sequence Length = 398525 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 363753 atggacggacggacggatgga 363773
>emb|CR450690.7| Zebrafish DNA sequence from clone CH211-78C14 in linkage group 11, complete sequence Length = 163328 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 67878 atggacggacggacggatgga 67898
>emb|CR589948.8| Zebrafish DNA sequence from clone CH211-160P12 in linkage group 15, complete sequence Length = 162791 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 82313 atggacggacggacggatgga 82333
>gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosome 1, complete sequence Length = 167927 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 26964 atggacggacggacggatgga 26944
>gb|AC124381.4| Mus musculus BAC clone RP24-406E24 from chromosome 15, complete sequence Length = 176561 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 53239 atggacggacggacggatgga 53259
>emb|CR762488.16| Zebrafish DNA sequence from clone DKEY-266J7 in linkage group 18, complete sequence Length = 154489 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 41393 atggacggacggacggatgga 41373
>emb|CR545462.25| Zebrafish DNA sequence from clone DKEYP-88F5 in linkage group 20, complete sequence Length = 199482 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 198145 atggacggacggacggatgga 198165
>gb|AC125409.3| Mus musculus BAC clone RP23-127O4 from 12, complete sequence Length = 209670 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 99446 atggacggacggacggatgga 99426
>emb|CR931814.13| Zebrafish DNA sequence from clone DKEY-236E8 in linkage group 5, complete sequence Length = 155089 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 111989 atggacggacggacggatgga 111969
>emb|BX927158.14| Zebrafish DNA sequence from clone DKEY-106K1 in linkage group 5, complete sequence Length = 144909 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 143168 atggacggacggacggatgga 143148
>emb|BX510331.13| Zebrafish DNA sequence from clone CH211-42B22 in linkage group 17, complete sequence Length = 150762 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 48415 atggacggacggacggatgga 48395
>gb|AC162871.2| Mus musculus chromosome 1, clone RP24-330F8, complete sequence Length = 126140 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 5758 atggacggacggacggatgga 5778
>emb|BX276112.19| Zebrafish DNA sequence from clone CH211-220I12 in linkage group 24, complete sequence Length = 146065 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 20184 atggacggacggacggatgga 20204
>gb|AC087363.17| Homo sapiens chromosome 8, clone RP11-529P14, complete sequence Length = 174028 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 116885 atggacggacggacggatgga 116865
>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the HHEX gene for hematopoietically expressed homeobox, the 5' end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a eukaryotic translation initiation factor 2 subunit 2 (eIF-2-beta) pseudogene and four CpG islands, complete sequence Length = 190144 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 162103 atggacggacggacggatgga 162083
>emb|AL589949.15| Human DNA sequence from clone RP11-169F1 on chromosome 10 Contains a CpG island, complete sequence Length = 153802 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 72435 atggacggacggacggatgga 72455
>emb|AL450026.10| Human DNA sequence from clone RP11-439A18 on chromosome 9 Contains the 5' UTR of a variant of a novel gene (MGC20553) and a CpG island, complete sequence Length = 84632 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 37025 atggacggacggacggatgga 37045
>emb|AL391316.7| Human DNA sequence from clone XX-YM901F10 on chromosome 20 Contains ESTs, GSSs and STSs, complete sequence Length = 49377 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 7685 atggacggacggacggatgga 7705
>emb|AL356072.21| Human DNA sequence from clone RP11-141M15 on chromosome 1 Contains the DNB5 gene for deleted in neuroblastoma 5 and the 3' end of the RERE gene for arginine-glutamic acid dipeptide (RE) repeats (KIAA0458), complete sequence Length = 122331 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 65505 atggacggacggacggatgga 65485
>emb|AL158822.19| Human DNA sequence from clone RP11-100C15 on chromosome 9q34.2-34.3 Contains the 3' end of a novel gene containing DKFZp434G2311, the KCNT1 gene for member 1 of the potassium channel subfamily T, the 3' end of a novel gene, part of the gene for a novel protein similar to mouse RIKEN 9230102I19 (9230102I19RIK) and nine CpG islands, complete sequence Length = 187336 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 83004 atggacggacggacggatgga 82984
>emb|AL035703.21|HS61A9 Human DNA sequence from clone RP1-61A9 on chromosome 1p35.2-36.13 Contains a novel gene (KIAA0478) and the EPHA8 gene for ephrin receptor EphA8 precursor, complete sequence Length = 160705 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 126565 atggacggacggacggatgga 126545
>emb|AL031847.17|HS120G22 Human DNA sequence from clone RP1-120G22 on chromosome 1p36.21-36.33 Contains the 5' end of the CHD5 gene for chromodomain helicase DNA binding protein 5, the RPL22 gene for ribosomal protein L22, eight novel genes, the ICMT gene for isoprenylcysteine carboxyl methyltransferase, possible ortholog of rodent transcription factor HES-3, the 3' end of the gene for brain acyl-CoA hydrolase (BACH) and seven CpG islands, complete sequence Length = 166518 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 134157 atggacggacggacggatgga 134137
>emb|AL022319.2|HS172B20 Human DNA sequence from clone RP1-172B20 on chromosome 22q12.3-13.1 Contains the 3' part of the CACNA1I gene for voltage-dependent calcium channel, alpha 1I subunit, ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 213721 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 523 atggacggacggacggatgga 503
>emb|BX470211.10| Zebrafish DNA sequence from clone DKEY-165A24 in linkage group 7, complete sequence Length = 173552 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 124094 atggacggacggacggatgga 124074
>gb|AC144770.1| Homo sapiens chromosome 19 clone XXfos-87852H4, complete sequence Length = 45852 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 5922 atggacggacggacggatgga 5942
>emb|CR407599.9| Zebrafish DNA sequence from clone CH211-273O22 in linkage group 13, complete sequence Length = 32537 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 18820 atggacggacggacggatgga 18840
>emb|BX649198.6| Zebrafish DNA sequence from clone DKEY-18L1 in linkage group 9, complete sequence Length = 139896 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 111244 atggacggacggacggatgga 111264
>emb|BX957230.5| Zebrafish DNA sequence from clone DKEY-106I11 in linkage group 6, complete sequence Length = 68670 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 17596 atggacggacggacggatgga 17616
>emb|BX927256.13| Zebrafish DNA sequence from clone CH211-272F14 in linkage group 5, complete sequence Length = 130184 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 78616 atggacggacggacggatgga 78596
>emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in linkage group 5, complete sequence Length = 142808 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 87816 atggacggacggacggatgga 87836
>emb|CR361569.11| Zebrafish DNA sequence from clone CH211-99I20 in linkage group 8, complete sequence Length = 97203 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 30871 atggacggacggacggatgga 30891
>emb|CR847800.4| Zebrafish DNA sequence from clone DKEY-182M5 in linkage group 14, complete sequence Length = 187193 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 83651 atggacggacggacggatgga 83671
>emb|CR293518.13| Zebrafish DNA sequence from clone CH211-129L10 in linkage group 12, complete sequence Length = 196374 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 175981 atggacggacggacggatgga 176001
>gb|AC078960.26| Homo sapiens Xp BAC RP11-692P14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 81427 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 58684 atggacggacggacggatgga 58704
>emb|AJ720631.1| Gallus gallus mRNA for hypothetical protein, clone 22c19 Length = 2338 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 23 ggacggncggacggatggagg 43 |||||| |||||||||||||| Sbjct: 155 ggacggacggacggatggagg 135
>emb|CR759889.5| Zebrafish DNA sequence from clone DKEY-172F14 in linkage group 5, complete sequence Length = 129171 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 259 atggacggacggacggatgga 239
>emb|BX663615.15| Zebrafish DNA sequence from clone DKEY-14B2 in linkage group 7, complete sequence Length = 212543 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 47203 atggacggacggacggatgga 47183
>gb|AC092566.2| Homo sapiens chromosome 19 clone LLNLR-239F4, complete sequence Length = 38046 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 28439 atggacggacggacggatgga 28419
>gb|AC010069.9| Drosophila melanogaster 3L BAC RP98-17C18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166352 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 63793 atggacggacggacggatgga 63773
>emb|BX510645.7| Zebrafish DNA sequence from clone DKEY-5G21 in linkage group 14, complete sequence Length = 218603 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 210424 atggacggacggacggatgga 210404 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 210404 atggacggacggacggatgga 210384
>gb|AC114147.5| Rattus norvegicus BAC CH230-144F3 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 214988 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 175075 atggacggacggacggatgga 175055
>gb|AC021755.9| Homo sapiens chromosome 15 clone RP11-521C20 map 15q15, complete sequence Length = 161794 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 10906 atggacggacggacggatgga 10886
>gb|AC092723.3| Homo sapiens chromosome 16 clone RP11-542M13, complete sequence Length = 188458 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 104329 atggacggacggacggatgga 104349
>emb|CR524364.1| Gallus gallus finished cDNA, clone ChEST812j8 Length = 791 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 218 atggacggacggacggatgga 198
>emb|BX294178.13| Zebrafish DNA sequence from clone CH211-271C18 in linkage group 7, complete sequence Length = 131441 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 40354 atggacggacggacggatgga 40334
>emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in linkage group 1, complete sequence Length = 166353 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 33256 atggacggacggacggatgga 33276
>emb|AL935334.14| Zebrafish DNA sequence from clone CH211-199B20 in linkage group 14, complete sequence Length = 191828 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 30100 atggacggccggacggatgga 30120 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 29670 atggacggccggacggatgga 29690
>emb|BX649487.7| Zebrafish DNA sequence from clone DKEY-148C4 in linkage group 9, complete sequence Length = 201933 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 173911 atggacggacggacggatgga 173931
>gb|AC025168.7|AC025168 Homo sapiens chromosome 15 clone RP11-43D14 map 15q14, complete sequence Length = 173336 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 126240 atggacggacggacggatgga 126220
>emb|BX649377.8| Zebrafish DNA sequence from clone CH211-196J1 in linkage group 19, complete sequence Length = 217898 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 75436 atggacggacggacggatgga 75416
>gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, complete sequence Length = 211945 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 129692 atggacggacggacggatgga 129712 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 129560 atggacggacggacggatgga 129580
>emb|BX322541.12| Zebrafish DNA sequence from clone DKEY-78P10 in linkage group 5, complete sequence Length = 227940 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 217922 atggacggacggacggatgga 217942
>emb|BX005074.10| Zebrafish DNA sequence from clone CH211-146J7 in linkage group 8, complete sequence Length = 153989 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 116681 atggacggacggacggatgga 116701
>gb|AC006112.4| Homo sapiens chromosome 16 clone RP11-472H7, complete sequence Length = 191158 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 189546 atggacggacggacggatgga 189526
>gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, complete sequence Length = 159520 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 51434 atggacggacggacggatgga 51414
>gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161127 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 6366 atggacggacggacggatgga 6386
>gb|AC122719.2| Homo sapiens chromosome 5 clone RP11-661C8, complete sequence Length = 164798 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 cgacacggtagccatgga 25 |||||||||||||||||| Sbjct: 42303 cgacacggtagccatgga 42320
>gb|AC092275.3| Homo sapiens chromosome 16 clone CTC-786C10, complete sequence Length = 191996 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 102921 atggacggacggacggatgga 102901
>gb|AC007790.1|AC007790 Homo sapiens clone RP11-283D18 from 7q31, complete sequence Length = 207791 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 69304 atggacggacggacggatgga 69284
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 cacggtagccatggacgg 28 |||||||||||||||||| Sbjct: 907123 cacggtagccatggacgg 907106
>emb|BX294118.4| Zebrafish DNA sequence from clone DKEYP-38B6, complete sequence Length = 184616 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 109214 atggacggacggacggatgga 109234
>emb|BX004814.8| Zebrafish DNA sequence from clone CH211-103I6 in linkage group 1, complete sequence Length = 171710 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 23329 atggacggacggacggatgga 23309
>emb|BX005447.8| Zebrafish DNA sequence from clone DKEY-29B14, complete sequence Length = 283185 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 128226 atggacggacggacggatgga 128246
>emb|BX005048.9| Zebrafish DNA sequence from clone CH211-167M1, complete sequence Length = 163525 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 56563 atggacggacggacggatgga 56543
>emb|BX001023.12| Zebrafish DNA sequence from clone CH211-233F10 in linkage group 5, complete sequence Length = 168064 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 20458 atggacggacggacggatgga 20478
>emb|BX530080.5| Zebrafish DNA sequence from clone CH211-191O15 in linkage group 14, complete sequence Length = 165220 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 24381 atggacggacggacggatgga 24401
>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7, complete sequence Length = 197927 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 104516 atggacggacggacggatgga 104536
>emb|AL805947.8| Zebrafish DNA sequence from clone CH211-212P13, complete sequence Length = 226542 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 97134 atggacggacggacggatgga 97114
>emb|BX248418.16| Zebrafish DNA sequence from clone DKEY-181I3 in linkage group 20, complete sequence Length = 152757 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 110921 atggacggacggacggatgga 110901
>emb|CR759865.13| Zebrafish DNA sequence from clone CH211-118E11 in linkage group 18, complete sequence Length = 95664 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 88167 atggacggacggacggatgga 88147
>emb|BX855612.9| Zebrafish DNA sequence from clone CH211-198C22 in linkage group 19, complete sequence Length = 212866 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 164781 atggacggacggacggatgga 164801
>emb|CR628326.8| Zebrafish DNA sequence from clone CH211-247N12 in linkage group 19, complete sequence Length = 146234 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 27933 atggacggacggacggatgga 27953
>emb|CR383683.17| Zebrafish DNA sequence from clone DKEY-114C3 in linkage group 22, complete sequence Length = 153095 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 65470 atggacggacggacggatgga 65450 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 65380 atggacggacggacggatgga 65360
>emb|BX950204.17| Zebrafish DNA sequence from clone DKEY-252P7 in linkage group 18, complete sequence Length = 133263 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 50248 atggacggacggacggatgga 50268
>emb|BX569790.15| Zebrafish DNA sequence from clone DKEY-66D18 in linkage group 4, complete sequence Length = 61279 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 22237 atggacggacggacggatgga 22257
>emb|BX571837.10| Zebrafish DNA sequence from clone CH211-261O1 in linkage group 19, complete sequence Length = 190521 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 164324 atggacggacggacggatgga 164304
>emb|BX897713.10| Zebrafish DNA sequence from clone DKEY-217M24 in linkage group 4, complete sequence Length = 52569 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 43966 atggacggacggacggatgga 43946
>emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in linkage group 4, complete sequence Length = 166156 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 10767 atggacggacggacggatgga 10787
>emb|BX247873.15| Zebrafish DNA sequence from clone CH211-198O12 in linkage group 8, complete sequence Length = 139803 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 111472 atggacggacggacggatgga 111452
>emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in linkage group 13, complete sequence Length = 220733 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 51234 atggacggacggacggatgga 51214
>emb|BX088533.9| Zebrafish DNA sequence from clone DKEY-24B15 in linkage group 1, complete sequence Length = 265699 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 208345 atggacggacggacggatgga 208325
>emb|BX901971.15| Zebrafish DNA sequence from clone DKEY-256M21 in linkage group 21, complete sequence Length = 156578 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 67623 atggacggacggacggatgga 67603
>emb|CR759742.10| Zebrafish DNA sequence from clone CH211-149K24 in linkage group 7, complete sequence Length = 130794 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 40235 atggacggacggacggatgga 40255
>gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete sequence Length = 425677 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 62638 atggacggacggacggatgga 62658
>emb|AL137786.3|CNS01DWO Human chromosome 14 DNA sequence BAC R-433J8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197689 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 87178 atggacggacggacggatgga 87198
>emb|Z98266.1|HSZ98266 Homo sapiens gene encoding plakophilin (exons 1-13) Length = 49999 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 37301 atggacggacggacggatgga 37321
>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence Length = 174902 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 80547 atggacggacggacggatgga 80527
>dbj|AP001271.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-826F13, complete sequence Length = 210402 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 79722 atggacggacggacggatgga 79702
>emb|AL929379.14| Zebrafish DNA sequence from clone CH211-156H6, complete sequence Length = 167232 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 159839 atggacggacggacggatgga 159819
>emb|AL954361.7| Zebrafish DNA sequence from clone CH211-280H11, complete sequence Length = 161681 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 141431 atggacggacggacggatgga 141451
>emb|CR933780.12| Zebrafish DNA sequence from clone DKEY-60F6 in linkage group 5, complete sequence Length = 227454 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 162331 atggacggacggacggatgga 162351
>gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, complete sequence Length = 217902 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 71959 atggacggacggacggatgga 71979
>emb|CR450823.9| Zebrafish DNA sequence from clone CH211-241M2 in linkage group 11, complete sequence Length = 73433 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 22959 atggacggacggacggatgga 22979
>emb|CR847498.12| Zebrafish DNA sequence from clone DKEY-263P22 in linkage group 14, complete sequence Length = 168227 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 129081 atggacggacggacggatgga 129061
>gb|AC162526.3| Mus musculus BAC clone RP23-50I19 from chromosome 13, complete sequence Length = 219418 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 23 ggacggncggacggatggagg 43 |||||| |||||||||||||| Sbjct: 62006 ggacggacggacggatggagg 62026
>emb|AL606967.14| Mouse DNA sequence from clone RP23-304D5 on chromosome 4, complete sequence Length = 188425 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 134300 atggacggacggacggatgga 134320
>emb|AL137918.4|CNS01DWQ Human chromosome 14 DNA sequence BAC R-442G21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162016 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 50385 atggacggacggacggatgga 50405
>emb|AL592303.15| Mouse DNA sequence from clone RP23-238L2 on chromosome 1, complete sequence Length = 146855 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Plus Query: 21 atggacggncggacggatgga 41 |||||||| |||||||||||| Sbjct: 2437 atggacggacggacggatgga 2457 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 84,338 Number of Sequences: 3902068 Number of extensions: 84338 Number of successful extensions: 18039 Number of sequences better than 10.0: 112 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17814 Number of HSP's gapped (non-prelim): 225 length of query: 48 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 28 effective length of database: 17,155,003,908 effective search space: 480340109424 effective search space used: 480340109424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
