ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7j22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monode... 1110 0.0
2gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full... 634 e-179
3gb|AY106646.1| Zea mays PCO091252 mRNA sequence 111 3e-21
4ref|XM_467388.1| Oryza sativa (japonica cultivar-group), mRNA 94 6e-16
5gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 94 6e-16
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
7dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
8dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
9dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 6e-16
10dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 6e-16
11ref|XM_467387.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
12gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reduct... 52 0.002
13gb|DQ411856.1| Lactobacillus casei ATCC 334 hypothetical protein... 42 2.0
14gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, comp... 42 2.0
15gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, compl... 42 2.0
16gb|AC123953.4| Mus musculus chromosome UL clone RP23-234O13, com... 42 2.0
17gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, comp... 40 8.1
18gb|AY621509.1| Oikopleura dioica envDll2-01 (envDll2-01), envDll... 40 8.1
19gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Canc... 40 8.1
20gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Can... 40 8.1
21gb|AC007834.40| Homo sapiens 12 BAC RP11-7G5 (Roswell Park Cance... 40 8.1
22gb|DQ159870.1| Physcomitrella patens monodehydroascorbate reduct... 40 8.1
23gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complet... 40 8.1
24gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromo... 40 8.1
25gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer... 40 8.1
26gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, comp... 40 8.1
27gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chrom... 40 8.1
28dbj|AK174018.1| Ciona intestinalis cDNA, clone:ciad018d09, full ... 40 8.1
29gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, co... 40 8.1
30dbj|AK116986.1| Ciona intestinalis cDNA, clone:cits012m05, full ... 40 8.1 
>emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monodehydroascorbate reductase
          Length = 1250

 Score = 1110 bits (560), Expect = 0.0
 Identities = 578/584 (98%)
 Strand = Plus / Minus

                                                                        
Query: 9    aacaatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgt 68
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 aacaatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgt 1173

                                                                        
Query: 69   acaggtttgtacagggtttcctccaagtaactgtatgtaaacaatagatcttcctccttc 128
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 acaggtttatacagggtttcctccaagtaactgtatgtaaacaatagatcttcctccttc 1113

                                                                        
Query: 129  cttccagcagtttatcccagccgcccgcaaaccgatcccgggtttcaccacctgcggcgc 188
            |||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct: 1112 cttccatcagtttatcccagccgcccgcgaaccgttccggggtttcaccacctgcggcgc 1053

                                                                        
Query: 189  ttcctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgtt 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 ttcctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgtt 993

                                                                        
Query: 249  gcataccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttc 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  gcataccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttc 933

                                                                        
Query: 309  ttgctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggcc 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  ttgctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggcc 873

                                                                        
Query: 369  ttggttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccaccttcc 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  ttggttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccaccttcc 813

                                                                        
Query: 429  aggaacgcgcccgtgatctggcccttactgacccagtatgcgccgaacctcgggctgttg 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  aggaacgcgcccgtgatctggcccttactgacccagtatgcgccgaacctcgggctgttg 753

                                                                        
Query: 489  cttgtgaagtcgccgtagtgaattacttctccgacattgtccccgtagaactgccaggac 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752  cttgtgaagtcgccgtagtgaattacttctccgacattgtccccgtagaactgccaggac 693

                                                        
Query: 549  agtgtgaagactcttgagtagaagaatggcaggtaatcgacgtc 592
            ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 692  agtgtgaagactcttgagtagaagaatggtaggtaatcgacgtc 649
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>gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full insert mRNA
            sequence
          Length = 1821

 Score =  634 bits (320), Expect = e-179
 Identities = 395/420 (94%)
 Strand = Plus / Minus

                                                                        
Query: 173  tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgacactgccgc 232
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1583 tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgagacggccgc 1524

                                                                        
Query: 233  aacgacccctgccgttgcataccatacgaaggtgggcttttcgccgagggtaaccccgct 292
            ||| ||||| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 1523 aacaacccccgccgtcgcgtaccacacgaaggtgggcttctcgccgagggtgaccccgct 1464

                                                                        
Query: 293  gtcaggcacctctttcttgctttcctggatggcaaacgctaggccttgtctttcaagttc 352
            ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1463 gtcaggcacgtctttcttgctttcctggatggcaaatgccaggccttgtctttcaagttc 1404

                                                                        
Query: 353  agacatgtccgaggccttggttttacgccggacaaccaccgacaatgcctcgtagtcgtc 412
            ||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct: 1403 agacatgtccgagaccttggttttacgccagacaaccaccgataacgcctcgtagtcgtc 1344

                                                                        
Query: 413  ccggttcccaccttccaggaacgcgcccgtgatctggcccttactgacccagtatgcgcc 472
            ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1343 ccggtccccgccttccaggaacgcgcccgtgatctggcccttgctgacccagtatgcgcc 1284

                                                                        
Query: 473  gaacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtcccc 532
            |||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1283 gaaccgagggctgttgctcgtgaagtcgccgtagtgaattacttctccgacattgtctcc 1224

                                                                        
Query: 533  gtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtc 592
             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1223 atagaactgccaggacagtgtgaagactctggagtagaagaatggcaggtaatcgacgtc 1164



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 66/76 (86%), Gaps = 2/76 (2%)
 Strand = Plus / Minus

                                                                        
Query: 2    ttcgttgaacaatatattatgagatttctatacttgtttaca-catgaggcaacgattac 60
            |||||| |||||||||| |||   ||||||||||||||||||  ||||| |||  |||||
Sbjct: 1715 ttcgtttaacaatatatgatggtgtttctatacttgtttacagtatgagacaa-aattac 1657

                            
Query: 61   actttcgtacaggttt 76
            ||||||||||||||||
Sbjct: 1656 actttcgtacaggttt 1641
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>gb|AY106646.1| Zea mays PCO091252 mRNA sequence
          Length = 1867

 Score =  111 bits (56), Expect = 3e-21
 Identities = 113/132 (85%)
 Strand = Plus / Minus

                                                                        
Query: 457  tgacccagtatgcgccgaacctcgggctgttgcttgtgaagtcgccgtagtgaattactt 516
            ||||||| ||||| ||||||||||| ||| ||||||||||||| ||  |||| |  ||||
Sbjct: 1273 tgacccaatatgcaccgaacctcggactgctgcttgtgaagtctccaaagtggaccactt 1214

                                                                        
Query: 517  ctccgacattgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatg 576
            | |||||||| ||||| ||||| ||||||||||  ||||| ||||| ||||||||||| |
Sbjct: 1213 ccccgacattatccccatagaattgccaggacaacgtgaacactctggagtagaagaacg 1154

                        
Query: 577  gcaggtaatcga 588
            ||||||||||||
Sbjct: 1153 gcaggtaatcga 1142



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 173  tcaccacctgcggcgcttcctgccgtaccaata 205
            |||||||||||||||||||||||| ||||||||
Sbjct: 1557 tcaccacctgcggcgcttcctgccataccaata 1525
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>ref|XM_467388.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1822

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                        
Query: 474  aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 533
            ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 1306 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 1247

                                                                   
Query: 534  tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcga 588
            ||||| |||||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct: 1246 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcga 1192



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 171  tttcaccacctgcggcgcttcctgccgtaccaataacc 208
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1609 tttcaccacctacggcgtttcctgccgtaccaataacc 1572
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>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                          
Query: 474    aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 533
              ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 113655 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 113596

                                                                     
Query: 534    tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcga 588
              ||||| |||||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct: 113595 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcga 113541



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                          
Query: 525    ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 584
              ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 116966 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 116907

                  
Query: 585    tcga 588
              ||||
Sbjct: 116906 tcga 116903



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 171    tttcaccacctgcggcgcttcctgccgtaccaataacc 208
              ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 113958 tttcaccacctacggcgtttcctgccgtaccaataacc 113921
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 98/115 (85%)
 Strand = Plus / Plus

                                                                            
Query: 474      aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 533
                ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 29248976 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 29249035

                                                                       
Query: 534      tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcga 588
                ||||| |||||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct: 29249036 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcga 29249090



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                            
Query: 525      ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 584
                ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 29245665 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 29245724

                    
Query: 585      tcga 588
                ||||
Sbjct: 29245725 tcga 29245728



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 171      tttcaccacctgcggcgcttcctgccgtaccaataacc 208
                ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 29248673 tttcaccacctacggcgtttcctgccgtaccaataacc 29248710
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>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 98/115 (85%)
 Strand = Plus / Plus

                                                                         
Query: 474   aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 533
             ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 46321 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 46380

                                                                    
Query: 534   tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcga 588
             ||||| |||||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct: 46381 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcga 46435



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 525   ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 584
             ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 43010 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 43069

                 
Query: 585   tcga 588
             ||||
Sbjct: 43070 tcga 43073



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 171   tttcaccacctgcggcgcttcctgccgtaccaataacc 208
             ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 46018 tttcaccacctacggcgtttcctgccgtaccaataacc 46055
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>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0680A05
          Length = 168092

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 98/115 (85%)
 Strand = Plus / Plus

                                                                          
Query: 474    aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 533
              ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 138944 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 139003

                                                                     
Query: 534    tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcga 588
              ||||| |||||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct: 139004 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcga 139058



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                          
Query: 525    ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 584
              ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 135633 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 135692

                  
Query: 585    tcga 588
              ||||
Sbjct: 135693 tcga 135696



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 171    tttcaccacctgcggcgcttcctgccgtaccaataacc 208
              ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 138641 tttcaccacctacggcgtttcctgccgtaccaataacc 138678
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>dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M23, full
            insert sequence
          Length = 1821

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                        
Query: 474  aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 533
            ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 1305 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 1246

                                                                   
Query: 534  tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcga 588
            ||||| |||||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct: 1245 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcga 1191



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 171  tttcaccacctgcggcgcttcctgccgtaccaataacc 208
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1608 tttcaccacctacggcgtttcctgccgtaccaataacc 1571
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>dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H12, full
           insert sequence
          Length = 1246

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                       
Query: 474 aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 533
           ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 748 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 689

                                                                  
Query: 534 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcga 588
           ||||| |||||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct: 688 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcga 634



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 171  tttcaccacctgcggcgcttcctgccgtaccaataacc 208
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1051 tttcaccacctacggcgtttcctgccgtaccaataacc 1014
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>ref|XM_467387.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                        
Query: 525  ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 584
            ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 1082 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 1023

                
Query: 585  tcga 588
            ||||
Sbjct: 1022 tcga 1019
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>gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reductase I (Mdhar1) gene,
            promoter region and complete cds
          Length = 6026

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 522  acattgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcagg 581
            |||||||| |||||||||||||| |||||  |||||   |  |||||||||||||| |||
Sbjct: 5547 acattgtcgccgtagaactgccacgacagattgaaggagcgggagtagaagaatgggagg 5488

                  
Query: 582  taatcg 587
            ||||||
Sbjct: 5487 taatcg 5482
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>gb|DQ411856.1| Lactobacillus casei ATCC 334 hypothetical protein (Lcas001), putative
             transposase (Lcas002), and putative transposase (Lcas003)
             genes, complete cds; and Lactobacillus casei phage Lca1,
             complete sequence
          Length = 52470

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 485   gttgcttgtgaagtcgccgta 505
             |||||||||||||||||||||
Sbjct: 10947 gttgcttgtgaagtcgccgta 10967
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>gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, complete sequence
          Length = 98328

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 97    aactgtatgtaaacaatagat 117
             |||||||||||||||||||||
Sbjct: 76165 aactgtatgtaaacaatagat 76145
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>gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, complete sequence
          Length = 104475

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 97    aactgtatgtaaacaatagat 117
             |||||||||||||||||||||
Sbjct: 28447 aactgtatgtaaacaatagat 28427
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>gb|AC123953.4| Mus musculus chromosome UL clone RP23-234O13, complete sequence
          Length = 194728

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 9     aacaatatattatgagatttctata 33
             ||||||||||| |||||||||||||
Sbjct: 61079 aacaatatattttgagatttctata 61103
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>gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, complete sequence
          Length = 218747

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   tcttcctccttccttccagc 136
             ||||||||||||||||||||
Sbjct: 16071 tcttcctccttccttccagc 16090
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>gb|AY621509.1| Oikopleura dioica envDll2-01 (envDll2-01), envDll2-02 (envDll2-02),
            envDll2-03 (envDll2-03), envDll2-04 (envDll2-04),
            envDll2-05 (envDll2-05), envDll2-06 (envDll2-06), and
            envDll2-07 (envDll2-07) genes, complete cds
          Length = 26938

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  ctttcttgctttcctggatg 323
            ||||||||||||||||||||
Sbjct: 5860 ctttcttgctttcctggatg 5841
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>gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224115

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    gatcttcctccttccttcca 134
              ||||||||||||||||||||
Sbjct: 115312 gatcttcctccttccttcca 115331
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>gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 156422

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   atagatcttcctccttcctt 131
             ||||||||||||||||||||
Sbjct: 91398 atagatcttcctccttcctt 91379
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>gb|AC007834.40| Homo sapiens 12 BAC RP11-7G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 210578

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    ttccttccagcagtttatcc 145
              ||||||||||||||||||||
Sbjct: 169088 ttccttccagcagtttatcc 169107
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>gb|DQ159870.1| Physcomitrella patens monodehydroascorbate reductase II (Mdhar2)
            gene, promoter region and complete cds
          Length = 6318

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 564  gagtagaagaatggcaggtaatcg 587
            ||||||||||| ||||||||||||
Sbjct: 5994 gagtagaagaaaggcaggtaatcg 5971
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>gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complete sequence
          Length = 72719

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    acaatatattatgagatttc 29
             ||||||||||||||||||||
Sbjct: 12817 acaatatattatgagatttc 12836
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>gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromosome unknown, complete
              sequence
          Length = 185966

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     ttctatacttgtttacacat 46
              ||||||||||||||||||||
Sbjct: 105485 ttctatacttgtttacacat 105504
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>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177503

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    agatcttcctccttccttcc 133
              ||||||||||||||||||||
Sbjct: 114459 agatcttcctccttccttcc 114440
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>gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, complete sequence
          Length = 180222

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    ttctatacttgtttacacat 46
             ||||||||||||||||||||
Sbjct: 34689 ttctatacttgtttacacat 34708
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>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete
              sequence
          Length = 198653

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     gagatttctatacttgttta 41
              ||||||||||||||||||||
Sbjct: 184406 gagatttctatacttgttta 184425
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>dbj|AK174018.1| Ciona intestinalis cDNA, clone:ciad018d09, full insert sequence
          Length = 3083

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 249  gcataccatacgaaggtggg 268
            ||||||||||||||||||||
Sbjct: 1557 gcataccatacgaaggtggg 1538
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>gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, complete sequence
          Length = 201229

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   tcttcctccttccttccagc 136
             ||||||||||||||||||||
Sbjct: 14017 tcttcctccttccttccagc 13998
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>dbj|AK116986.1| Ciona intestinalis cDNA, clone:cits012m05, full insert sequence
          Length = 1634

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  gcataccatacgaaggtggg 268
            ||||||||||||||||||||
Sbjct: 1118 gcataccatacgaaggtggg 1137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,048,799
Number of Sequences: 3902068
Number of extensions: 5048799
Number of successful extensions: 86868
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86798
Number of HSP's gapped (non-prelim): 68
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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