ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7j18 |
|---|---|
| Clone Library Name | barley_pub |
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 33.5 bits (75), Expect = 0.59 Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Frame = -2 Query: 665 PTSCTALPVLMVVVMGTHLVATGTPRSSMDTLRNRGTLLSMDTLP-SSMATLHSSMATPL 489 P + T LPVL T AT TL GTL T P ++M+T+H S +TP Sbjct: 4244 PRTATTLPVLTSTA--TKSTATSVTPIPSSTLGTTGTLPEQTTTPVATMSTIHPS-STPE 4300 Query: 488 PATLAHLVTVVATEEASAWAAC*LEAQQLLPPLTEHTRSLTAGTVEADT 342 + ++T AT A++ + LTE T TA T A T Sbjct: 4301 TTHTSTVLTTKATTRATSSTSTPSSTPGTTWILTELT---TAATTTAGT 4346
>SLYD_SHIFL (P0A9L2) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%) Frame = +3 Query: 507 AVEGSHAAGEGIHAEEGTPVAEGIHAAAGG-------TRGHQMGTHDHHHEH 641 AVE H +G H G + + A GH G HDHHH+H Sbjct: 111 AVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDH 162
>SLYD_ECOLI (P0A9K9) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%) Frame = +3 Query: 507 AVEGSHAAGEGIHAEEGTPVAEGIHAAAGG-------TRGHQMGTHDHHHEH 641 AVE H +G H G + + A GH G HDHHH+H Sbjct: 111 AVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDH 162
>SLYD_ECOL6 (P0A9L0) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%) Frame = +3 Query: 507 AVEGSHAAGEGIHAEEGTPVAEGIHAAAGG-------TRGHQMGTHDHHHEH 641 AVE H +G H G + + A GH G HDHHH+H Sbjct: 111 AVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDH 162
>SLYD_ECO57 (P0A9L1) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%) Frame = +3 Query: 507 AVEGSHAAGEGIHAEEGTPVAEGIHAAAGG-------TRGHQMGTHDHHHEH 641 AVE H +G H G + + A GH G HDHHH+H Sbjct: 111 AVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDH 162
>SOX1_HUMAN (O00570) SOX-1 protein| Length = 387 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Frame = +3 Query: 474 SQGSRQGGSHAAVEG---------SHAAGEGIHAEEGTPVAEGIHAAAGGTRGHQMGTHD 626 S G GG++A V G AA + +A G H AGG H+ H Sbjct: 172 SPGGAAGGAYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHRTPAHP 231 Query: 627 H-HHEH 641 H HH H Sbjct: 232 HPHHPH 237
>PNR_DROME (P52168) GATA-binding factor-A (Transcription factor GATA-A)| (dGATA-A) (Protein pannier) Length = 540 Score = 31.2 bits (69), Expect = 2.9 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = +3 Query: 480 GSRQGGSHAAVEGSHAAGEGIHAEEGTPVAE-GIHAAAGGTRGHQM-GTHDHHHEH 641 GS GG A+ SH+A E GTP H GGT GH + HHH H Sbjct: 416 GSSSGGGSASAYTSHSA-ETPALSNGTPSPHYQHHHHLGGTHGHHVTAAAAHHHFH 470
>OPY1_YEAST (P38271) Protein OPY1 (Overproduction-induced pheromone resistant| yeast protein 1) Length = 328 Score = 30.4 bits (67), Expect = 5.0 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +3 Query: 546 AEEGTPVAEGIHAAAGGTRGHQMGTHDHHHEHR 644 ++ TP A+ G G G H HHH HR Sbjct: 27 SQNKTPTAQSSSGNNGAADGAPQGYHHHHHHHR 59
>MARCS_CHICK (P16527) Myristoylated alanine-rich C-kinase substrate (MARCKS)| Length = 280 Score = 30.0 bits (66), Expect = 6.5 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = +3 Query: 489 QGGSHAAVEGSH-----AAGEGIHAEEGTPVAEGIHAAAGGTR 602 +GG+ AA EG AA E EEG AE AAA G+R Sbjct: 149 EGGAAAAAEGGKEEAAAAAPEAAGGEEGKAAAEEASAAAAGSR 191
>MEOX2_RAT (P39020) Homeobox protein MOX-2 (Growth arrest-specific homeobox)| Length = 303 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 555 GTPVAEGIHAAAGGTRGHQMGTHDHHHEHRQRR 653 G P EG+ A+ RGH H HHH H+Q++ Sbjct: 52 GYPNEEGMFASQHH-RGHHHHHHHHHHHHQQQQ 83
>MEOX2_MOUSE (P32443) Homeobox protein MOX-2 (Mesenchyme homeobox 2)| Length = 303 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 555 GTPVAEGIHAAAGGTRGHQMGTHDHHHEHRQRR 653 G P EG+ A+ RGH H HHH H+Q++ Sbjct: 52 GYPNEEGMFASQHH-RGHHHHHHHHHHHHQQQQ 83
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 30.0 bits (66), Expect = 6.5 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = +3 Query: 474 SQGSRQGGSHAAVEGSHAAGEGIHAEEG--TPVAEGIHAAAGGTRGHQMGTHDHHHEHRQ 647 S S +++ + S G + G T A G AAAG + HQ H HHH H Sbjct: 258 SNNSSSSSNNSFTKASSPNNNGARSVGGAATSAATGTTAAAG-SHHHQPHHHHHHHHHHH 316 Query: 648 R 650 + Sbjct: 317 Q 317
>TYY1_MOUSE (Q00899) Transcriptional repressor protein YY1 (Yin and yang 1)| (YY-1) (Delta transcription factor) (NF-E1) (UCR-motif DNA-binding protein) Length = 414 Score = 30.0 bits (66), Expect = 6.5 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +3 Query: 573 GIHAAAGGTRGHQMGTHDHHHEH 641 G H GG GH H HHH H Sbjct: 57 GDHGGGGGGHGHAGHHHHHHHHH 79
>SLYD_HAEIN (P44830) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) Length = 190 Score = 29.6 bits (65), Expect = 8.5 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 14/63 (22%) Frame = +3 Query: 495 GSHAAVEGSHA-AGEGIH-------AEEGTPV------AEGIHAAAGGTRGHQMGTHDHH 632 G V+G+H AG+ +H A E T G H+ GH G HH Sbjct: 114 GDEVVVDGNHMLAGQELHFTVEVVAAREATLEEIAHGHVHGAHSHDDDEEGHGCGCGGHH 173 Query: 633 HEH 641 HEH Sbjct: 174 HEH 176
>FANCG_HUMAN (O15287) Fanconi anemia group G protein (Protein FACG) (DNA-repair| protein XRCC9) Length = 622 Score = 29.6 bits (65), Expect = 8.5 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Frame = -2 Query: 620 GTHLVATGTPRSSMDTLRNRGTLLS----MDTLPSSMATLHSSMATPLPATLAHLVTVVA 453 G + TG P ++ +L + L + + +++ + H M P A L V A Sbjct: 216 GLQELITGNPDKALSSLHEAASGLCPRPVLVQVYTALGSCHRKMGNPQRALL---YLVAA 272 Query: 452 TEEASAWAAC*LEAQQLLPPLTEHTRSL 369 +E SAW LEA +L L + T L Sbjct: 273 LKEGSAWGPPLLEASRLYQQLGDTTAEL 300
>Y101_UREPA (Q9PR43) Hypothetical protein UU101| Length = 188 Score = 29.6 bits (65), Expect = 8.5 Identities = 14/50 (28%), Positives = 20/50 (40%) Frame = +3 Query: 492 GGSHAAVEGSHAAGEGIHAEEGTPVAEGIHAAAGGTRGHQMGTHDHHHEH 641 GG+ G H + + T +E GGT+ G H+H H H Sbjct: 133 GGAKDDCCGGHEHEHEVCCDSETKTSETQEECCGGTKDDCCGGHEHEHHH 182
>SDC3_CHICK (P26261) Syndecan-3 precursor| Length = 405 Score = 29.6 bits (65), Expect = 8.5 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 10/118 (8%) Frame = -2 Query: 665 PTSCTALPVLMVVVMGTHLVATGTPRSSMDTLRNR---GTLLSMDTLPSSMATLHSSMAT 495 PT+ LPV +V M T T +S + + + +PS T S+ A+ Sbjct: 83 PTTVAVLPVTLVQPMATPFELFPTEDTSPEQTTSVLYIPKITEAPVIPSWKTTTASTTAS 142 Query: 494 PLPATLAHLVTVVATEEASAWAAC*LEA-------QQLLPPLTEHTRSLTAGTVEADT 342 P+T + T AT + A Q+ LPP + A T+E T Sbjct: 143 DSPSTTSTTTTTAATTTTTTTTISTTVATSKPTTTQRFLPPFVTKAATTRATTLETPT 200 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,572,364 Number of Sequences: 219361 Number of extensions: 857059 Number of successful extensions: 4485 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3626 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4338 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
