ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7j12 |
|---|---|
| Clone Library Name | barley_pub |
>CRTSO_ARATH (Q9M9Y8) Carotenoid isomerase, chloroplast precursor (EC 5.-.-.-)| (CrtISO) (Carotenoid and chloroplast regulation protein 2) Length = 587 Score = 108 bits (270), Expect(2) = 2e-39 Identities = 51/59 (86%), Positives = 55/59 (93%) Frame = -1 Query: 566 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIDLEQRSPILDTGLLGVLRWLRTLA 390 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADI LE++S +LD GLLG+L WLRTLA Sbjct: 529 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSRVLDVGLLGLLGWLRTLA 587 Score = 74.3 bits (181), Expect(2) = 2e-39 Identities = 32/39 (82%), Positives = 36/39 (92%) Frame = -3 Query: 684 EVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTS 568 EVG+P+THRRFLAR+ GTYGPMPRG PKGLL MPFNTT+ Sbjct: 490 EVGTPRTHRRFLARDKGTYGPMPRGTPKGLLGMPFNTTA 528
>CRTSO_DAUCA (Q2VEX9) Carotenoid isomerase, chloroplast precursor (EC 5.-.-.-)| (CrtISO) Length = 615 Score = 106 bits (264), Expect(2) = 2e-38 Identities = 50/59 (84%), Positives = 53/59 (89%) Frame = -1 Query: 566 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIDLEQRSPILDTGLLGVLRWLRTLA 390 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD+ LEQ+SPILD LL +L W RTLA Sbjct: 557 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGLEQKSPILDAALLRLLGWFRTLA 615 Score = 73.2 bits (178), Expect(2) = 2e-38 Identities = 31/39 (79%), Positives = 36/39 (92%) Frame = -3 Query: 684 EVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTS 568 EVG+PKTHRR+LAR+ GTYGPMP+G PKGLL MPFNTT+ Sbjct: 518 EVGTPKTHRRYLARDSGTYGPMPQGTPKGLLGMPFNTTA 556
>CRTSO_LYCES (Q8S4R4) Carotenoid isomerase, chloroplast precursor (EC 5.-.-.-)| (CrtISO) (Protein tangerine) Length = 615 Score = 101 bits (252), Expect(2) = 2e-37 Identities = 47/59 (79%), Positives = 53/59 (89%) Frame = -1 Query: 566 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIDLEQRSPILDTGLLGVLRWLRTLA 390 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD+ E++S +LD+ LL +L WLRTLA Sbjct: 557 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKSDVLDSALLRLLGWLRTLA 615 Score = 74.7 bits (182), Expect(2) = 2e-37 Identities = 32/39 (82%), Positives = 36/39 (92%) Frame = -3 Query: 684 EVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTS 568 EVG+PKTHRR+LAR+ GTYGPMPRG PKGLL MPFNTT+ Sbjct: 518 EVGTPKTHRRYLARDSGTYGPMPRGTPKGLLGMPFNTTA 556
>CRTS1_ONCHC (Q52QW3) Carotenoid isomerase 1, chloroplast precursor (EC 5.-.-.-)| (CrtISO1) (OcrtISO22) Length = 587 Score = 100 bits (250), Expect(2) = 1e-36 Identities = 45/59 (76%), Positives = 54/59 (91%) Frame = -1 Query: 566 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIDLEQRSPILDTGLLGVLRWLRTLA 390 I+GLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD+ +E+++P+LD LL +L WLRT+A Sbjct: 529 INGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGIEKKAPVLDAALLRLLGWLRTVA 587 Score = 72.4 bits (176), Expect(2) = 1e-36 Identities = 32/39 (82%), Positives = 35/39 (89%) Frame = -3 Query: 684 EVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTS 568 EVG+PKTHRRFLAR+ GTYGPMPR PKGLL MPFNTT+ Sbjct: 490 EVGTPKTHRRFLARDSGTYGPMPRKVPKGLLGMPFNTTA 528
>CRTS2_ONCHC (Q52QW2) Carotenoid isomerase 2, chloroplast precursor (EC 5.-.-.-)| (CrtISO2) (OcrtISO24) Length = 587 Score = 100 bits (248), Expect(2) = 2e-36 Identities = 45/59 (76%), Positives = 53/59 (89%) Frame = -1 Query: 566 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIDLEQRSPILDTGLLGVLRWLRTLA 390 I+GLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD+ E+++P+LD LL +L WLRT+A Sbjct: 529 INGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKAPVLDAALLRLLGWLRTVA 587 Score = 72.4 bits (176), Expect(2) = 2e-36 Identities = 32/39 (82%), Positives = 35/39 (89%) Frame = -3 Query: 684 EVGSPKTHRRFLARNDGTYGPMPRGKPKGLLAMPFNTTS 568 EVG+PKTHRRFLAR+ GTYGPMPR PKGLL MPFNTT+ Sbjct: 490 EVGTPKTHRRFLARDSGTYGPMPRKVPKGLLGMPFNTTA 528
>RRMJ_WOLTR (Q5GS59) Ribosomal RNA large subunit methyltransferase J (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) Length = 216 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +2 Query: 98 HEHINDQETRSPVLSSYRSPSAYSLI 175 H H+NDQ + SYRS SAY LI Sbjct: 23 HRHLNDQYVQKTNKDSYRSRSAYKLI 48
>CRTI_RHOCA (P17054) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene| desaturase) Length = 524 Score = 30.8 bits (68), Expect = 4.1 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -1 Query: 569 QIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRV 474 ++DGLY VG PG GV +V SG + A + Sbjct: 468 EVDGLYLVGAGTHPGAGVPSVIGSGELVAQMI 499
>CRTD_RHOS4 (Q01671) Methoxyneurosporene dehydrogenase (EC 1.14.99.-)| Length = 495 Score = 30.8 bits (68), Expect = 4.1 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = -1 Query: 617 HGVNPRVCWQCLSIPLQ---IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIDLEQR 447 +G++P L PL + GL+ G PG GV A SG A + AD+ R Sbjct: 436 YGLSPHGALASLKRPLARTALPGLWLAGGGAHPGAGVPMAALSGRHAAEAILADLASRSR 495
>CRTI_CERNC (P48537) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene| desaturase) Length = 621 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 566 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIDLE 453 I GLY VG S PG GV G + A ++ D ++ Sbjct: 530 IKGLYMVGASAHPGTGVPICLAGGALVAEQICGDYGVD 567 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,640,432 Number of Sequences: 219361 Number of extensions: 2500797 Number of successful extensions: 5655 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 5499 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5655 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
