ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7j01 |
|---|---|
| Clone Library Name | barley_pub |
>SPCS3_ARATH (Q9MA96) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 167 Score = 189 bits (481), Expect = 5e-48 Identities = 90/122 (73%), Positives = 103/122 (84%) Frame = -2 Query: 614 NWFQKEANANDEG*HDAETSPADLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGII 435 N F+K+++ NDE + S ADL SLFTWNTKQVFVFVAAEYETP+N+LNQVSLWD II Sbjct: 47 NRFKKQSHGNDEVSLTLDIS-ADLQSLFTWNTKQVFVFVAAEYETPKNSLNQVSLWDAII 105 Query: 434 PAKEHAKFLIHTTNKYRFIDQGSNLKAKDFNLTMHWHIMPKTGKMFADKIVMTGYQLPEQ 255 PAKEHAKF I +NKYRFIDQG NL+ KDFNLT+HWH+MPKTGKMFADKIV+ GY LP+ Sbjct: 106 PAKEHAKFRIQVSNKYRFIDQGQNLRGKDFNLTLHWHVMPKTGKMFADKIVLPGYSLPDA 165 Query: 254 YR 249 YR Sbjct: 166 YR 167
>SPCS3_ORYSA (Q9LGB4) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 147 Score = 102 bits (255), Expect = 7e-22 Identities = 44/88 (50%), Positives = 61/88 (69%) Frame = -2 Query: 515 QVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKFLIHTTNKYRFIDQGSNLKAKDFNLT 336 +VFVF+ AEYE +N+LNQVSLWD IIP K+ A + +KY IDQGS+L+ K L Sbjct: 58 KVFVFLTAEYENSKNSLNQVSLWDHIIPDKDKANLQVEVKSKYPLIDQGSSLRGKKVQLV 117 Query: 335 MHWHIMPKTGKMFADKIVMTGYQLPEQY 252 +HWH+MPK G M D++ ++ + LP+ Y Sbjct: 118 LHWHVMPKAGVMIRDRMALSEFNLPDSY 145
>SPCS3_CHICK (P28687) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) (gp23) Length = 180 Score = 80.1 bits (196), Expect = 5e-15 Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Frame = -2 Query: 551 ADLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAK-FLIHTTNKYRFID 375 ADL S+F WN KQ+F++++AEY T NALNQV LWD II ++ + FL +KY F D Sbjct: 72 ADLQSIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIILRGDNPRLFLKDMKSKYFFFD 131 Query: 374 QGSNLKA-KDFNLTMHWHIMPKTG 306 G+ LK ++ LT+ W+++P G Sbjct: 132 DGNGLKGNRNVTLTLSWNVVPNAG 155
>SPCS3_HUMAN (P61009) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) Length = 180 Score = 79.0 bits (193), Expect = 1e-14 Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 2/84 (2%) Frame = -2 Query: 551 ADLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKFLI-HTTNKYRFID 375 ADL ++F WN KQ+F++++AEY T NALNQV LWD I+ ++ K L+ KY F D Sbjct: 72 ADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFD 131 Query: 374 QGSNLKA-KDFNLTMHWHIMPKTG 306 G+ LK ++ LT+ W+++P G Sbjct: 132 DGNGLKGNRNVTLTLSWNVVPNAG 155
>SPCS3_CANFA (P61008) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) Length = 180 Score = 79.0 bits (193), Expect = 1e-14 Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 2/84 (2%) Frame = -2 Query: 551 ADLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKFLI-HTTNKYRFID 375 ADL ++F WN KQ+F++++AEY T NALNQV LWD I+ ++ K L+ KY F D Sbjct: 72 ADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFD 131 Query: 374 QGSNLKA-KDFNLTMHWHIMPKTG 306 G+ LK ++ LT+ W+++P G Sbjct: 132 DGNGLKGNRNVTLTLSWNVVPNAG 155
>SPCS3_RAT (Q568Z4) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) Length = 180 Score = 73.6 bits (179), Expect = 5e-13 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%) Frame = -2 Query: 551 ADLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKF-LIHTTNKYRFID 375 ADL F WN KQ+F++++AEY T NA+NQV LWD I+ E+ K L +KY F D Sbjct: 72 ADLEKTFDWNVKQLFLYLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKSKYFFFD 131 Query: 374 QGSNLKA-KDFNLTMHWHIMPKTG 306 G LK ++ LT+ W ++P G Sbjct: 132 DGHGLKGNRNVTLTLSWQVIPIAG 155
>SPCS3_MOUSE (Q9D365) Signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 23 kDa subunit) (SPase 22 kDa subunit) (SPC22/23) Length = 180 Score = 73.6 bits (179), Expect = 5e-13 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%) Frame = -2 Query: 551 ADLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKF-LIHTTNKYRFID 375 ADL F WN KQ+F++++AEY T NA+NQV LWD I+ E+ K L +KY F D Sbjct: 72 ADLEKTFDWNVKQLFLYLSAEYSTKSNAVNQVVLWDKILLRGENPKLNLKDVKSKYFFFD 131 Query: 374 QGSNLKA-KDFNLTMHWHIMPKTG 306 G LK ++ LT+ W ++P G Sbjct: 132 DGHGLKGNRNVTLTLSWQVIPIAG 155
>SCP3_KLULA (Q6CRY8) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 189 Score = 73.6 bits (179), Expect = 5e-13 Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 3/84 (3%) Frame = -2 Query: 548 DLSSLFTWNTKQVFVFVAAEYETPQN--ALNQVSLWDGIIPAKEHAKFLIHTTN-KYRFI 378 D S LF WNTKQVF +V AEYE +N +N++++WD IIP++++A F + + KY+ Sbjct: 81 DFSRLFNWNTKQVFAYVTAEYEGDENPHTMNEITIWDKIIPSRDNATFTLSDIDAKYQLW 140 Query: 377 DQGSNLKAKDFNLTMHWHIMPKTG 306 D S + + +HW+I P G Sbjct: 141 DLESKITERPLTFKLHWNIQPWFG 164
>SPCS3_DROME (Q9VCA9) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 179 Score = 72.0 bits (175), Expect = 1e-12 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Frame = -2 Query: 548 DLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKFLIHTTN-KYRFIDQ 372 +L+ +F WN KQ+F+++ AEY+TP N LNQV LWD II ++A N KY F D Sbjct: 73 NLTGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWDKIILRGDNAVLDFKNMNTKYYFWDD 132 Query: 371 GSNLK-AKDFNLTMHWHIMPKTG 306 G+ LK ++ +L + W+I+P G Sbjct: 133 GNGLKDNRNVSLYLSWNIIPNAG 155
>SPCS3_CAEBR (Q60MW2) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 180 Score = 69.7 bits (169), Expect = 7e-12 Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 2/111 (1%) Frame = -2 Query: 548 DLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKF-LIHTTNKYRFIDQ 372 D S LF WN KQ+FV++ AEY++ +NA+NQV +WD I+ E I KY F+D Sbjct: 73 DFSRLFNWNVKQLFVYLVAEYKSAENAVNQVVIWDRIVERAERVVMDEIGVKTKYYFLDD 132 Query: 371 GSN-LKAKDFNLTMHWHIMPKTGKMFADKIVMTGYQLPEQYR*TTTVPKRT 222 G++ LK + + ++++P G + ++V + QL + T T +R+ Sbjct: 133 GAHLLKHDNVTFVLRYNVIPNAGYL---RLVQSTNQLVVPFPTTYTTTRRS 180
>SPCS3_CAEEL (P34525) Probable signal peptidase complex subunit 3 (EC 3.4.-.-)| (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) Length = 180 Score = 67.8 bits (164), Expect = 3e-11 Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 2/111 (1%) Frame = -2 Query: 548 DLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKF-LIHTTNKYRFIDQ 372 D S +F WN KQ+FV++ AEY++ N +NQV LWD I+ + I +KY F+D Sbjct: 73 DFSKIFNWNVKQLFVYLVAEYKSKVNEVNQVVLWDRIVERADRVVMDEIGVKSKYYFLDD 132 Query: 371 GSN-LKAKDFNLTMHWHIMPKTGKMFADKIVMTGYQLPEQYR*TTTVPKRT 222 G+N L K+ + ++++P +G + ++V + Q+ + T T +R+ Sbjct: 133 GTNLLNHKNVTFVLRYNVIPNSGYL---RLVQSSDQVVVPFPTTYTTTRRS 180
>SPC3_SCHPO (Q10259) Probable microsomal signal peptidase subunit 3 (EC| 3.4.-.-) Length = 185 Score = 65.9 bits (159), Expect = 1e-10 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Frame = -2 Query: 551 ADLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKFLIHTT----NKYR 384 ADLS L+ WNTK V V++ A Y T ++ NQV +WD I+ + E +K + T + Sbjct: 77 ADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNIQAHP 136 Query: 383 FIDQGSNLKAKDFNLTMHWHIMPKTG 306 F + + + K+ T+HW + PK G Sbjct: 137 FNEYSNQFEGKNATYTLHWTVSPKMG 162
>SPC3_YEAST (Q12133) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 184 Score = 65.5 bits (158), Expect = 1e-10 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Frame = -2 Query: 548 DLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPAKEHAKFLIH-TTNKYRFID- 375 DL+ LF WNTKQVFV++ AEY + + ++V+ WD II +K+ A ++ +KY D Sbjct: 81 DLTPLFNWNTKQVFVYLTAEYNSTEKITSEVTFWDKIIKSKDDAVIDVNDLRSKYSIWDI 140 Query: 374 QGSNLKAKDFNLTMHWHIMPKTG 306 + + KD +HW++ P G Sbjct: 141 EDGKFEGKDLVFKLHWNVQPWVG 163
>SPC3_DEBHA (Q6BPD6) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 190 Score = 62.0 bits (149), Expect = 1e-09 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%) Frame = -2 Query: 569 DAETSPADLSSLFTWNTKQVFVFVAAEYE-TPQNALNQVSLWDGIIPAKEHAKFLI-HTT 396 D ET DLS LF WNTKQ+FV++ AEY + N+++ WD II +KE A L+ + Sbjct: 78 DLET---DLSPLFNWNTKQLFVYLTAEYPGKSDGSSNKITYWDKIITSKEDAVLLLKNQK 134 Query: 395 NKYRFIDQGSNLKAKDFNLTMHWHIMPKTGKM 300 +KY D + + +D + + W++ P G + Sbjct: 135 SKYSVWDIEPSFRQRDAVVKLEWNLQPHIGPL 166
>SPC3_YARLI (Q6C4R5) Microsomal signal peptidase subunit 3 (EC 3.4.-.-)| Length = 185 Score = 61.6 bits (148), Expect = 2e-09 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%) Frame = -2 Query: 551 ADLSSLFTWNTKQVFVFVAAEYETPQ-NALNQVSLWDGIIPAKEHAKFLIHTTN-KYRFI 378 ADLS LF WNTK VF ++ A Y+ + + +N++++WD II K+ + + N KY Sbjct: 82 ADLSPLFNWNTKLVFAYLTATYDGKRDDIVNEITIWDQIITDKDDSHIKLKGANSKYSLY 141 Query: 377 DQGSNLKAKDFNLTMHWHIMPKTG 306 D + + ++ + +HW+I P G Sbjct: 142 DVEESFRNRNATVKLHWNIQPHVG 165
>PLXB3_HUMAN (Q9ULL4) Plexin-B3 precursor| Length = 1909 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 471 CPESSLPLGWNHTGEGARQVFDPYHKQVQIH*PGEQPEGQGL 346 CP+SS + H EG R ++ +Q+ PG P+ +GL Sbjct: 646 CPQSSHCVYGEHCPEGERTIYSAQEVDIQVRGPGACPQVEGL 687
>TRPB_BLOFL (Q7VR00) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 398 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -2 Query: 503 FVAAEYETPQNALNQVSLWDGIIPAKEHAKFLIH 402 +V+ E NA ++SL++GIIPA E A L H Sbjct: 324 YVSINDEEAINAFQELSLYEGIIPALESAHALAH 357
>MUC2L_RAT (P98089) Intestinal mucin-like protein (MLP) (Fragment)| Length = 837 Score = 30.8 bits (68), Expect = 3.5 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = -1 Query: 471 CPESSLPLGWNHTGEGARQVFDPYHKQVQIH*PGEQPEGQGLQPDDA 331 C + + + W + +GA V P H+Q Q P E+P Q P ++ Sbjct: 399 CAQEGVCIDWRNHTQGACAVTCPAHRQYQACGPSEEPTCQSSSPKNS 445
>HEMH_LISMO (Q8Y565) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 309 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = -2 Query: 440 IIPAKEHAKFLIHTTNKYRFIDQGSNLKAKDFNLTMHWHIMPKTGKMFADKIVMTGYQLP 261 I+ A ++ F + NK R + L N W+ PK +M+AD+I T Q+P Sbjct: 110 IVLAPHYSSFSVEAYNK-RAKEAADKLGGPRINAINDWYKQPKFIQMWADRINETAKQIP 168 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,183,271 Number of Sequences: 219361 Number of extensions: 2033193 Number of successful extensions: 5305 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5094 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5297 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
