ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7i20 |
|---|---|
| Clone Library Name | barley_pub |
>DOCK9_RAT (Q63603) Dedicator of cytokinesis protein 9 (Cdc42 guanine| nucleotide exchange factor zizimin 1) (TRG protein) (Fragment) Length = 720 Score = 49.7 bits (117), Expect = 7e-06 Identities = 30/89 (33%), Positives = 45/89 (50%) Frame = -1 Query: 551 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRAIRVHF 372 LQ LQGSV+VQVN+G L+ AFL R +F+ C +A+ V+ Sbjct: 545 LQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNE 604 Query: 371 RLIGEEDQEFHTQLVNGFQSLTAELSHYI 285 RLI E+ E+ ++ ++ + ELS I Sbjct: 605 RLIKEDQLEYQEEMKANYREIRKELSDII 633
>DOCK9_HUMAN (Q9BZ29) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide| exchange factor zizimin 1) Length = 2069 Score = 49.3 bits (116), Expect = 9e-06 Identities = 29/86 (33%), Positives = 44/86 (51%) Frame = -1 Query: 551 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRAIRVHF 372 LQ LQGSV+VQVN+G L+ AFL R +F+ C +A+ V+ Sbjct: 1976 LQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNE 2035 Query: 371 RLIGEEDQEFHTQLVNGFQSLTAELS 294 RLI E+ E+ ++ ++ + ELS Sbjct: 2036 RLIKEDQLEYQEEMKANYREMAKELS 2061
>DOCK9_MOUSE (Q8BIK4) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide| exchange factor zizimin 1) Length = 2055 Score = 49.3 bits (116), Expect = 9e-06 Identities = 29/86 (33%), Positives = 44/86 (51%) Frame = -1 Query: 551 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRAIRVHF 372 LQ LQGSV+VQVN+G L+ AFL R +F+ C +A+ V+ Sbjct: 1962 LQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNE 2021 Query: 371 RLIGEEDQEFHTQLVNGFQSLTAELS 294 RLI E+ E+ ++ ++ + ELS Sbjct: 2022 RLIKEDQLEYQEEMKANYREMAKELS 2047
>DOC10_HUMAN (Q96BY6) Dedicator of cytokinesis protein 10 (Protein zizimin 3)| Length = 2183 Score = 47.0 bits (110), Expect = 4e-05 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%) Frame = -1 Query: 608 DELEEPRSSEGDQLPRLQSLQRI-----LQGSVAVQVNSGVLSVCTAFLSGEPATRLRSX 444 DE+ + + SE +QL ++ + I LQGSV+V+VN+G ++ AFL A + Sbjct: 2031 DEMSK-KVSELNQLCTMEEVDMIRLQLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDN 2089 Query: 443 XXXXXXXXXXEFMAVCKRAIRVHFRLIGEEDQEFHTQLVNGFQSLTAELS 294 +F C +A+ V+ RLI E+ E+ +L + ++ + +ELS Sbjct: 2090 QVKLLKEIFRQFADACGQALDVNERLIKEDQLEYQEELRSHYKDMLSELS 2139
>DOC10_MOUSE (Q8BZN6) Dedicator of cytokinesis protein 10 (Fragment)| Length = 1816 Score = 47.0 bits (110), Expect = 4e-05 Identities = 31/95 (32%), Positives = 51/95 (53%) Frame = -1 Query: 551 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRAIRVHF 372 LQ LQGSV+V+VN+G ++ AFL A + +F C +A+ V+ Sbjct: 1679 LQLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDNQVKLLKEIFRQFADACGQALDVNE 1738 Query: 371 RLIGEEDQEFHTQLVNGFQSLTAELSHYIPAILSE 267 RLI E+ E+ +L + ++ + +ELS AI++E Sbjct: 1739 RLIKEDQLEYQEELRSHYKDMLSELS----AIMNE 1769
>DOCK6_MOUSE (Q8VDR9) Dedicator of cytokinesis protein 6 (Fragment)| Length = 849 Score = 46.2 bits (108), Expect = 7e-05 Identities = 31/101 (30%), Positives = 44/101 (43%) Frame = -1 Query: 566 PRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRA 387 P + LQ +LQGSV VN G L V FLS P +F C+ A Sbjct: 727 PDAKMLQMVLQGSVGPTVNQGPLEVAQVFLSEIPEDPKLFRHHNKLRLCFKDFCKKCEDA 786 Query: 386 IRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIPAILSEL 264 +R + LIG + +E+H +L + L L + L +L Sbjct: 787 LRKNKALIGPDQKEYHRELERHYSRLREALQPLLTQRLPQL 827
>DOCK8_MOUSE (Q8C147) Dedicator of cytokinesis protein 8| Length = 1037 Score = 45.4 bits (106), Expect = 1e-04 Identities = 32/101 (31%), Positives = 43/101 (42%) Frame = -1 Query: 566 PRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRA 387 P + LQ +LQGSV VN G L V FL+ PA EF+ C A Sbjct: 906 PDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIPADPKLYRHHNKLRLCFKEFIMRCGEA 965 Query: 386 IRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIPAILSEL 264 + + RLI E +E+ +L + L L I + EL Sbjct: 966 VEKNRRLITAEQREYQQELKKNYNKLRDSLRPMIERKIPEL 1006
>DOCK8_HUMAN (Q8NF50) Dedicator of cytokinesis protein 8| Length = 2031 Score = 44.7 bits (104), Expect = 2e-04 Identities = 31/101 (30%), Positives = 43/101 (42%) Frame = -1 Query: 566 PRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRA 387 P + LQ +LQGSV VN G L V FL+ PA EF+ C A Sbjct: 1900 PDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIPADPKLYRHHNKLRLCFKEFIMRCGEA 1959 Query: 386 IRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIPAILSEL 264 + + RLI + +E+ +L + L L I + EL Sbjct: 1960 VEKNKRLITADQREYQQELKKNYNKLKENLRPMIERKIPEL 2000
>DOCK6_HUMAN (Q96HP0) Dedicator of cytokinesis protein 6| Length = 2047 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/101 (29%), Positives = 44/101 (43%) Frame = -1 Query: 566 PRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRA 387 P + LQ +LQGSV VN G L V FL+ P +F C+ A Sbjct: 1925 PDAKMLQMVLQGSVGPTVNQGPLEVAQVFLAEIPEDPKLFRHHNKLRLCFKDFCKKCEDA 1984 Query: 386 IRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIPAILSEL 264 +R + LIG + +E+H +L + L L + L +L Sbjct: 1985 LRKNKALIGPDQKEYHRELERNYCRLREALQPLLTQRLPQL 2025
>DOCK7_HUMAN (Q96N67) Dedicator of cytokinesis protein 7| Length = 1542 Score = 43.1 bits (100), Expect = 6e-04 Identities = 29/96 (30%), Positives = 42/96 (43%) Frame = -1 Query: 551 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRAIRVHF 372 LQ +LQGSV VN G L V FLS P+ +F C+ A+R + Sbjct: 1423 LQMVLQGSVGTTVNQGPLEVAQVFLSEIPSDPKLFRHHNKLRLCFKDFTKRCEDALRKNK 1482 Query: 371 RLIGEEDQEFHTQLVNGFQSLTAELSHYIPAILSEL 264 LIG + +E+ +L + L L I + +L Sbjct: 1483 SLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQL 1518
>DOCK7_MOUSE (Q8R1A4) Dedicator of cytokinesis protein 7 (Fragment)| Length = 727 Score = 42.7 bits (99), Expect = 8e-04 Identities = 29/96 (30%), Positives = 41/96 (42%) Frame = -1 Query: 551 LQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSXXXXXXXXXXXEFMAVCKRAIRVHF 372 LQ +LQGSV VN G L V FLS P +F C+ A+R + Sbjct: 608 LQMVLQGSVGTTVNQGPLEVAQVFLSEIPGDPKLFRHHNKLRLCFKDFTKRCEDALRKNK 667 Query: 371 RLIGEEDQEFHTQLVNGFQSLTAELSHYIPAILSEL 264 LIG + +E+ +L + L L I + +L Sbjct: 668 SLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQL 703
>SRBP2_CRIGR (Q60429) Sterol regulatory element-binding protein 2 (SREBP-2)| (Sterol regulatory element-binding transcription factor 2) Length = 1139 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = +2 Query: 122 AEMQRPVSSQTIQPKLLE--I*TFGADPQLKKSTNHSHAT*LPATFATVIAPKVWQV 286 A++Q V+S +QP ++ + T A L ++ N + T PAT TV AP+V QV Sbjct: 181 AQVQSLVTSSQVQPVTIQQQVQTVQAQRVLTQTANGTLQTLAPATVQTVAAPQVQQV 237
>SRBP2_HUMAN (Q12772) Sterol regulatory element-binding protein 2 (SREBP-2)| (Sterol regulatory element-binding transcription factor 2) Length = 1141 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = +2 Query: 125 EMQRPVSSQTIQPKLLE--I*TFGADPQLKKSTNHSHAT*LPATFATVIAPKVWQV 286 ++Q V+S +QP ++ + T A L ++ N + T PAT TV AP+V QV Sbjct: 184 QVQSLVTSSQVQPVTIQQQVQTVQAQRVLTQTANGTLQTLAPATVQTVAAPQVQQV 239
>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1574 Score = 30.0 bits (66), Expect = 5.5 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 6/83 (7%) Frame = -3 Query: 534 RKCGCSGQQWCIKRMHRFLVWRACNQAPVSRTATA-DCCIA*I-----HGCLQACNPCAF 373 R+ GC+ Q WCI + R + + + Q + T CC GCL + CA Sbjct: 70 RRTGCAQQAWCIGQERRTVYYMSYRQVYATEARTVFRCCPGWSQKPGQEGCLSDVDECA- 128 Query: 372 *IDRGRRPGVPHATCQWVSVSYC 304 G C V YC Sbjct: 129 ----SANGGCEGPCCNTVGGFYC 147
>FBLN2_HUMAN (P98095) Fibulin-2 precursor| Length = 1184 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = -3 Query: 546 KDTPRKCGCSGQQWCIKRMHRFLVWRACNQAPVSRTATADCCIA 415 KD C +GQQW I + + + V RTA CC++ Sbjct: 439 KDLIETCCAAGQQWAIDNDECLEIPESGTEDNVCRTAQRHCCVS 482
>KUP1_AGRT5 (Q8UHH1) Probable potassium transport system protein kup 1| Length = 639 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = -3 Query: 321 VSVSYC*AFSLYTCHTFGAMTVAKVAGS*VACEWLVDFFSWGSAPNVHISSSFGCI 154 + +S C L+ + G TVAK G + W F G A +HI+ FG + Sbjct: 158 IPISVCILIGLFAIQSHGTGTVAKFFGP-ITAVW---FLVMGGAGLIHIADDFGIL 209
>DRD1_PIG (P50130) D(1A) dopamine receptor| Length = 446 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/40 (25%), Positives = 21/40 (52%) Frame = -3 Query: 219 LVDFFSWGSAPNVHISSSFGCIV*ELTGLCISAVSRFWGV 100 + F+ +GS N+ ++ C + LC+ +V R+W + Sbjct: 86 IAGFWPFGSFCNIWVAFDIMCSTASILNLCVISVDRYWAI 125
>DRD1_MOUSE (Q61616) D(1A) dopamine receptor| Length = 446 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/40 (25%), Positives = 21/40 (52%) Frame = -3 Query: 219 LVDFFSWGSAPNVHISSSFGCIV*ELTGLCISAVSRFWGV 100 + F+ +GS N+ ++ C + LC+ +V R+W + Sbjct: 85 IAGFWPFGSFCNIWVAFDIMCSTASILNLCVISVDRYWAI 124
>DRD1_MACMU (O77680) D(1A) dopamine receptor| Length = 446 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/40 (25%), Positives = 21/40 (52%) Frame = -3 Query: 219 LVDFFSWGSAPNVHISSSFGCIV*ELTGLCISAVSRFWGV 100 + F+ +GS N+ ++ C + LC+ +V R+W + Sbjct: 86 IAGFWPFGSFCNIWVAFDIMCSTASILNLCVISVDRYWAI 125
>DRD1_HUMAN (P21728) D(1A) dopamine receptor| Length = 446 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/40 (25%), Positives = 21/40 (52%) Frame = -3 Query: 219 LVDFFSWGSAPNVHISSSFGCIV*ELTGLCISAVSRFWGV 100 + F+ +GS N+ ++ C + LC+ +V R+W + Sbjct: 86 IAGFWPFGSFCNIWVAFDIMCSTASILNLCVISVDRYWAI 125
>DRD1_DIDMA (P42288) D(1A) dopamine receptor| Length = 446 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/40 (25%), Positives = 21/40 (52%) Frame = -3 Query: 219 LVDFFSWGSAPNVHISSSFGCIV*ELTGLCISAVSRFWGV 100 + F+ +GS N+ ++ C + LC+ +V R+W + Sbjct: 85 IAGFWPFGSFCNIWVAFDIMCSTASILNLCVISVDRYWAI 124
>Y757_METJA (Q58167) Hypothetical protein MJ0757| Length = 260 Score = 29.3 bits (64), Expect = 9.4 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +3 Query: 384 DCTLADSHEFKQ-CSNQLLQFLRPEPGCRLARQESGAY 494 D +LA + K+ CSN ++F P+P C L ++E Y Sbjct: 125 DLSLALRRDLKRVCSNYNIEFENPKPFCSLEKKEGNEY 162
>DRD1_RABIT (O02664) D(1A) dopamine receptor (Fragment)| Length = 180 Score = 29.3 bits (64), Expect = 9.4 Identities = 10/40 (25%), Positives = 21/40 (52%) Frame = -3 Query: 219 LVDFFSWGSAPNVHISSSFGCIV*ELTGLCISAVSRFWGV 100 + F+ +GS N+ ++ C + LC+ +V R+W + Sbjct: 47 IAGFWPFGSFCNIWVAFDIMCSTASILNLCVISVDRYWAI 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,617,163 Number of Sequences: 219361 Number of extensions: 1682458 Number of successful extensions: 3910 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3810 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3908 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
