ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7i03 |
|---|---|
| Clone Library Name | barley_pub |
>CR18_ORYSA (Q06397) 18 kDa cold-induced protein| Length = 156 Score = 92.0 bits (227), Expect = 7e-19 Identities = 41/68 (60%), Positives = 50/68 (73%) Frame = -2 Query: 477 KLSDKHVWPRPIEVILSTMGYAWIXCDIWLSNIAWPFGHSGWTSILLLYSVASAC*RKEX 298 + SD+HVWP P EV+LSTMG AW+ CDIWL + WP G+S WT +LL SVA A RKE Sbjct: 89 EFSDQHVWPCPTEVLLSTMGNAWVGCDIWLRDTPWPSGNSRWTHVLLPLSVAPASHRKEL 148 Query: 297 PQDSYVGT 274 P+D+ VGT Sbjct: 149 PEDTNVGT 156
>DERL1_PONPY (Q5R9W3) Derlin-1 (Degradation in endoplasmic reticulum protein 1)| (Der1-like protein 1) Length = 251 Score = 50.4 bits (119), Expect = 2e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 9/107 (8%) Frame = -3 Query: 467 ISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHPL-ASGKXYLK 291 +S + + ++ YLPW +LG I G LVGHLY+F +P+ G+ +L Sbjct: 142 VSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLS 201 Query: 290 TPMWVHKIVARFR-----LGVQANSLARQANTGPSAFR---GRGYRL 174 TP ++++ + R GV S+ R A+ R G+G+RL Sbjct: 202 TPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRL 248
>DERL1_MOUSE (Q99J56) Derlin-1 (Degradation in endoplasmic reticulum protein 1)| (Der1-like protein 1) Length = 251 Score = 50.4 bits (119), Expect = 2e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 9/107 (8%) Frame = -3 Query: 467 ISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHPL-ASGKXYLK 291 +S + + ++ YLPW +LG I G LVGHLY+F +P+ G+ +L Sbjct: 142 VSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLS 201 Query: 290 TPMWVHKIVARFR-----LGVQANSLARQANTGPSAFR---GRGYRL 174 TP ++++ + R GV S+ R A+ R G+G+RL Sbjct: 202 TPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRL 248
>DERL1_HUMAN (Q9BUN8) Derlin-1 (Degradation in endoplasmic reticulum protein 1)| (Der1-like protein 1) (DERtrin-1) Length = 251 Score = 50.4 bits (119), Expect = 2e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 9/107 (8%) Frame = -3 Query: 467 ISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHPL-ASGKXYLK 291 +S + + ++ YLPW +LG I G LVGHLY+F +P+ G+ +L Sbjct: 142 VSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLS 201 Query: 290 TPMWVHKIVARFR-----LGVQANSLARQANTGPSAFR---GRGYRL 174 TP ++++ + R GV S+ R A+ R G+G+RL Sbjct: 202 TPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRL 248
>DERL1_BOVIN (Q71SS4) Derlin-1 (Degradation in endoplasmic reticulum protein 1)| (Der1-like protein 1) Length = 251 Score = 50.4 bits (119), Expect = 2e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 9/107 (8%) Frame = -3 Query: 467 ISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHPL-ASGKXYLK 291 +S + + ++ YLPW +LG I G LVGHLY+F +P+ G+ +L Sbjct: 142 VSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLS 201 Query: 290 TPMWVHKIVARFR-----LGVQANSLARQANTGPSAFR---GRGYRL 174 TP ++++ + R GV S+ R A+ R G+G+RL Sbjct: 202 TPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRL 248
>DERL2_CAEEL (Q21997) Derlin-2 (DER1-like protein 2) (cDerlin-2)| Length = 237 Score = 48.1 bits (113), Expect = 1e-05 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = -3 Query: 470 QISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHPLAS-GKXYL 294 Q++ +G++ + YLPW +L ++ G+ GH+Y+F + P GK +L Sbjct: 138 QMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFPFQEHGKRFL 197 Query: 293 KTPMWV 276 KTP W+ Sbjct: 198 KTPQWL 203
>DERL3_HUMAN (Q96Q80) Derlin-3 (Degradation in endoplasmic reticulum protein 3)| (Der1-like protein 3) (DERtrin-3) Length = 235 Score = 47.4 bits (111), Expect = 2e-05 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Frame = -3 Query: 470 QISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHP-LASGKXYL 294 +++ +GL+ ++ +LPWA++G ++ G+ VGH+YYF + P GK L Sbjct: 140 RVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRLL 199 Query: 293 KTP 285 +TP Sbjct: 200 QTP 202
>DERL3_MOUSE (Q9D8K3) Derlin-3 (Degradation in endoplasmic reticulum protein 3)| (Der1-like protein 3) (Protein IZP6) Length = 228 Score = 46.6 bits (109), Expect = 3e-05 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Frame = -3 Query: 470 QISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHP-LASGKXYL 294 +++ +GL+ ++ +LPWA++G ++ G+ LVGH+YYF + P GK L Sbjct: 140 RVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRLL 199 Query: 293 KTP 285 TP Sbjct: 200 LTP 202
>DERL2_MOUSE (Q8BNI4) Derlin-2 (Degradation in endoplasmic reticulum protein 2)| (Der1-like protein 2) (F-LANa) Length = 239 Score = 42.7 bits (99), Expect = 5e-04 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -3 Query: 470 QISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHP-LASGKXYL 294 +++ +GL+ ++ +LPW ++G ++ G+ VGH+Y+F + P G L Sbjct: 140 RMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDIFPNQPGGIRIL 199 Query: 293 KTP 285 KTP Sbjct: 200 KTP 202
>DERL2_PONPY (Q5RC74) Derlin-2 (Degradation in endoplasmic reticulum protein 2)| (Der1-like protein 2) Length = 239 Score = 42.4 bits (98), Expect = 6e-04 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -3 Query: 470 QISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHP-LASGKXYL 294 +++ +GL+ ++ +LPW ++G ++ G+ VGH+Y+F + P G L Sbjct: 140 RMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRIL 199 Query: 293 KTP 285 KTP Sbjct: 200 KTP 202
>DERL2_HUMAN (Q9GZP9) Derlin-2 (Degradation in endoplasmic reticulum protein 2)| (Der1-like protein 2) (DERtrin-2) (F-LANa) (F-LAN-1) Length = 239 Score = 42.4 bits (98), Expect = 6e-04 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = -3 Query: 470 QISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHP-LASGKXYL 294 +++ +GL+ ++ +LPW ++G ++ G+ VGH+Y+F + P G L Sbjct: 140 RMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRIL 199 Query: 293 KTP 285 KTP Sbjct: 200 KTP 202
>DERL1_CAEEL (Q93561) Derlin-1 (DER1-like protein 1) (cDerlin-1)| Length = 245 Score = 39.3 bits (90), Expect = 0.005 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = -3 Query: 431 YLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHPLASGKXYLKTPMWVHKIV 264 YLPW + G + LVGH Y+F + +P G + TP ++H+++ Sbjct: 153 YLPWVLWGFNAVLRGGGTNELVGILVGHAYFFVALKYPDEYGVDLISTPEFLHRLI 208
>DERL1_DROME (Q9VQ57) Derlin-1 (DER1-like protein 1)| Length = 245 Score = 37.7 bits (86), Expect = 0.015 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 8/108 (7%) Frame = -3 Query: 467 ISMYGLVQLRSFYLPWAMLGLXVIFGSXXXXXXXXXLVGHLYYFFTVLHPL-ASGKXYLK 291 +S + + ++ YLPW + IF VGH+YYFF + G L+ Sbjct: 141 VSFWFGTRFKAMYLPWVLAAFEFIF-HFSLASLVGIFVGHVYYFFKFQYSQDLGGTPLLE 199 Query: 290 TPMWVHKIV-------ARFRLGVQANSLARQANTGPSAFRGRGYRLNQ 168 TP ++ ++V F L ++ + RQA P GRG L + Sbjct: 200 TPQFLKRLVPDVSGGFGGFGLPPESRAPPRQATESP---WGRGMTLGR 244
>CEMA_PHYPA (Q6YXR1) Chloroplast envelope membrane protein| Length = 439 Score = 30.4 bits (67), Expect = 2.5 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +3 Query: 279 PHRSLEVXLSASKRMQHCKEVV*MSNQN-AQKARQYWRA 392 P+RSLE ASK++QH K+ N+N +R+ W+A Sbjct: 16 PYRSLERAYRASKKIQHIKKNYIFYNKNIISSSRRSWQA 54
>SYV_ONYPE (Q6YRJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 882 Score = 29.3 bits (64), Expect = 5.5 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = -2 Query: 444 IEVILSTMGYAW-IXCDI---WLSNIAWPFGHSGW 352 I+V + + G W + CD+ W S+ WPF GW Sbjct: 428 IKVQIESPGPEWSLDCDVLDTWFSSALWPFSTLGW 462
>CEL_BOVIN (P30122) Bile-salt-activated lipase precursor (EC 3.1.1.3) (EC| 3.1.1.13) (BAL) (Bile-salt-stimulated lipase) (BSSL) (Carboxyl ester lipase) (Sterol esterase) (Cholesterol esterase) (Pancreatic lysophospholipase) (Fragment) Length = 597 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/41 (31%), Positives = 17/41 (41%) Frame = -2 Query: 372 PFGHSGWTSILLLYSVASAC*RKEXPQDSYVGTQDCCSIQV 250 P H GW L S C + QDS G +DC + + Sbjct: 63 PERHPGWQGTLKAKSFKKRCLQATLTQDSTYGNEDCLYLNI 103
>DAD4_SCHPO (Q50HP4) DASH complex subunit dad4 (Outer kinetochore protein dad4)| Length = 72 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +3 Query: 318 RMQHCKEVV*MSNQNAQKARQYW-----RAKYHXQSKHS 419 R+ H +++ MSN N + A Q W K+H + H+ Sbjct: 29 RLNHSLQLINMSNMNVELASQMWANYARNVKFHLEETHT 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,542,668 Number of Sequences: 219361 Number of extensions: 1135697 Number of successful extensions: 2629 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2627 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
