ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7i03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ784277.1| Hordeum vulgare subsp. vulgare partial mRNA for ... 387 e-104
2gb|AY854013.1| Zea mays derlin1-1 mRNA, complete cds 188 1e-44
3dbj|D10860.1|RICORFB Oryza sativa (japonica cultivar-group) mRNA... 188 1e-44
4gb|AY574280.1| Cynodon dactylon putative Der1-like family protei... 153 6e-34
5gb|AY854014.1| Zea mays derlin1-2 mRNA, complete cds 147 4e-32
6ref|XM_476078.1| Oryza sativa (japonica cultivar-group), predic... 141 2e-30
7emb|AJ251622.1|ZMA251622 Zea mays mRNA for putative NADH oxidore... 141 2e-30
8gb|AY109493.1| Zea mays CL1200_1 mRNA sequence 135 1e-28
9gb|AY854017.1| Zea mays derlin1-1 gene, complete cds 113 5e-22
10gb|AY854018.1| Zea mays derlin1-2 gene, complete cds 109 8e-21
11gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
12gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
14gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
15ref|NM_119078.3| Arabidopsis thaliana unknown protein AT4G29330 ... 50 0.007
16gb|AY096457.1| Arabidopsis thaliana unknown protein (At4g29330) ... 50 0.007
17gb|AY063817.1| Arabidopsis thaliana unknown protein (At4g29330) ... 50 0.007
18emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ... 50 0.007
19emb|BX826348.1|CNS0A38I Arabidopsis thaliana Full-length cDNA Co... 50 0.007
20emb|BX841558.1|CNS09YFE Arabidopsis thaliana Full-length cDNA Co... 50 0.007
21gb|U43323.1|ATU43323 Arabidopsis thaliana profilin 2 and profili... 50 0.007
22gb|BC019175.1| Mus musculus methylmalonyl-Coenzyme A mutase, mRN... 42 1.6
23dbj|AK148304.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 42 1.6
24gb|AC116326.5| Mus musculus BAC clone RP24-64C6 from chromosome ... 40 6.5
25ref|XM_947497.1| Theileria annulata strain Ankara hypothetical p... 40 6.5
26gb|AC087045.7| Homo sapiens chromosome 8, clone CTD-2342N23, com... 40 6.5
27gb|AC090213.6| Homo sapiens chromosome 18, clone RP11-760L24, co... 40 6.5
28gb|AC083843.5| Homo sapiens chromosome 8, clone RP11-157B5, comp... 40 6.5
29gb|AC010776.10| Homo sapiens chromosome 18, clone RP11-2N1, comp... 40 6.5
30gb|AC084265.4| Homo sapiens chromosome 2, clone CTB-2367F13, com... 40 6.5
31gb|AC027684.3| Homo sapiens chromosome 16 clone RP11-148F10, com... 40 6.5
32gb|AC151837.4| Mus musculus BAC clone RP23-330A14 from chromosom... 40 6.5
33gb|AC108476.5| Homo sapiens BAC clone RP11-1413K20 from 2, compl... 40 6.5
34gb|AC018768.7| Homo sapiens chromosome 16 clone RP11-564M2, comp... 40 6.5
35dbj|BS000137.1| Pan troglodytes chromosome 22 clone:LA-PCR-1, ma... 40 6.5
36gb|AC125270.7| Mus musculus chromosome 5, clone RP24-150L20, com... 40 6.5
37dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.5
38emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chr... 40 6.5
39dbj|AP001472.1| Homo sapiens genomic DNA, chromosome 21q22.3, cl... 40 6.5 
>emb|AJ784277.1| Hordeum vulgare subsp. vulgare partial mRNA for putative Der1-like
           family protein (der1p gene)
          Length = 206

 Score =  387 bits (195), Expect = e-104
 Identities = 202/205 (98%)
 Strand = Plus / Plus

                                                                       
Query: 52  attctntgtnagtgggaaaatccccaacccggattcctagagctgccagagtttagattg 111
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   attctttgtaagtgggaaaatccccaacccggattcctagagctgccagagtttagattg 61

                                                                       
Query: 112 gatccatgttaacttgttcatgcctcttgtagatcgccaggcgtcgcagcagtctactga 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  gatccatgttaacttgttcatgcctcttgtagatcgccaggcgtcgcagcagtctactga 121

                                                                       
Query: 172 ttgagtctatagcctcttcctctgaaggcactagggccagtgttagcttgccgggctaga 231
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttgagtctatagcctcctcctctgaaggcactagggccagtgttagcttgccgggctaga 181

                                    
Query: 232 gagtttgcctgcacgcccaacctga 256
           |||||||||||||||||||||||||
Sbjct: 182 gagtttgcctgcacgcccaacctga 206
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>gb|AY854013.1| Zea mays derlin1-1 mRNA, complete cds
          Length = 1074

 Score =  188 bits (95), Expect = 1e-44
 Identities = 189/221 (85%)
 Strand = Plus / Minus

                                                                       
Query: 252 cctgaatcgagcaacaatcttgtgtacccacataggagtcttgaggtanttctttccgct 311
           ||||||||||||||||||||| ||||||||  ||||||||||||||||  |||| ||| |
Sbjct: 715 cctgaatcgagcaacaatcttatgtacccatttaggagtcttgaggtagctcttcccggt 656

                                                                       
Query: 312 agcaagcggatgcaacactgtaaagaagtagtatagatgtccaaccagaatgcccaaaag 371
            ||||| || |||||||||| |||||||||||| |||||||||||||  || |||| |||
Sbjct: 655 ggcaagagggtgcaacactgcaaagaagtagtagagatgtccaaccatgatacccagaag 596

                                                                       
Query: 372 gccaggcaatattggagagccaaatatcacatncaatccaagcatagcccatggtagata 431
            ||||||| || ||  || ||||||||||||| ||||   |||||||||||||| |||||
Sbjct: 595 tccaggcattaatgatgacccaaatatcacatccaataagagcatagcccatggaagata 536

                                                    
Query: 432 aaatgacctcaattggacgaggccatacatgcttatctgag 472
           ||| |||||||||||||||||||| || ||  |||||||||
Sbjct: 535 aaaggacctcaattggacgaggccgtatatatttatctgag 495
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>dbj|D10860.1|RICORFB Oryza sativa (japonica cultivar-group) mRNA for chilling tolerance
           related protein, complete cds, clone:pBC442
          Length = 754

 Score =  188 bits (95), Expect = 1e-44
 Identities = 189/221 (85%)
 Strand = Plus / Minus

                                                                       
Query: 253 ctgaatcgagcaacaatcttgtgtacccacataggagtcttgaggtanttctttccgcta 312
           |||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||| | 
Sbjct: 554 ctgaatcgagcaacaatcttatgtacccacattggtgtcttcaggtagttctttccggtg 495

                                                                       
Query: 313 gcaagcggatgcaacactgtaaagaagtagtatagatgtccaaccagaatgcccaaaagg 372
           || ||||| ||||||||||  | |||||||||    |||||||| ||||| |||| ||||
Sbjct: 494 gctagcgggtgcaacactgagaggaagtagtacgtgtgtccaacgagaattcccagaagg 435

                                                                       
Query: 373 ccaggcaatattggagagccaaatatcacatncaatccaagcatagcccatggtagataa 432
           ||||| | |||    |||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 434 ccagggagtatctctgagccaaatatcacatccaacccaagcattgcccatggtagataa 375

                                                    
Query: 433 aatgacctcaattggacgaggccatacatgcttatctgaga 473
           || ||||||| |||||| |||||||||||||| ||||||||
Sbjct: 374 aaggacctcagttggacaaggccatacatgctgatctgaga 334
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>gb|AY574280.1| Cynodon dactylon putative Der1-like family protein mRNA, complete
           cds
          Length = 1049

 Score =  153 bits (77), Expect = 6e-34
 Identities = 234/287 (81%)
 Strand = Plus / Minus

                                                                       
Query: 172 ttgagtctatagcctcttcctctgaaggcactagggccagtgttagcttgccgggctaga 231
           |||||||||| || | |||||||||||||||  | ||||||| | ||| | | | || ||
Sbjct: 795 ttgagtctatggcttgttcctctgaaggcaccggagccagtgctggctggtctgactgga 736

                                                                       
Query: 232 gagtttgcctgcacgcccaacctgaatcgagcaacaatcttgtgtacccacataggagtc 291
           |||||||||||||| || | ||  |||||||||||||||  |||||||||  | ||||||
Sbjct: 735 gagtttgcctgcacacctatcccaaatcgagcaacaatccagtgtacccattttggagtc 676

                                                                       
Query: 292 ttgaggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtatagatgt 351
           || | ||| ||||||||  | || || || ||||||||||||||||||||||| ||||||
Sbjct: 675 ttcaagtaattctttccagtggctagtgggtgcaacactgtaaagaagtagtacagatgt 616

                                                                       
Query: 352 ccaaccagaatgcccaaaaggccaggcaatattggagagccaaatatcacatncaatcca 411
           ||||||| ||| ||||  |||||||| |  || |  || ||||||||||||| |||| ||
Sbjct: 615 ccaaccataatacccatgaggccaggaatgatagatgacccaaatatcacatccaatgca 556

                                                          
Query: 412 agcatagcccatggtagataaaatgacctcaattggacgaggccata 458
           |||||  ||||||| |||||||| ||||||||| |||  ||||||||
Sbjct: 555 agcattacccatggaagataaaacgacctcaataggataaggccata 509



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 175 agtctatagcctcttcctctgaaggcac 202
           ||||| |||| |||||||||||||||||
Sbjct: 849 agtctgtagcttcttcctctgaaggcac 822
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>gb|AY854014.1| Zea mays derlin1-2 mRNA, complete cds
          Length = 1029

 Score =  147 bits (74), Expect = 4e-32
 Identities = 165/196 (84%)
 Strand = Plus / Minus

                                                                       
Query: 253 ctgaatcgagcaacaatcttgtgtacccacataggagtcttgaggtanttctttccgcta 312
           |||||||||||||||||||| ||||||||  | |||||||||||||| ||||||||| | 
Sbjct: 732 ctgaatcgagcaacaatcttatgtacccatttcggagtcttgaggtagttctttccggtg 673

                                                                       
Query: 313 gcaagcggatgcaacactgtaaagaagtagtatagatgtccaaccagaatgcccaaaagg 372
           || || || |||||||||| |||| |||||||||||||||||||||  || |||| ||||
Sbjct: 672 gcgagagggtgcaacactgcaaagtagtagtatagatgtccaaccatgatacccagaagg 613

                                                                       
Query: 373 ccaggcaatattggagagccaaatatcacatncaatccaagcatagcccatggtagataa 432
           || |||| || ||| || |||||||||||||  |||   |||||| ||||||| ||||||
Sbjct: 612 cctggcattaatggtgatccaaatatcacatctaataagagcataacccatggaagataa 553

                           
Query: 433 aatgacctcaattgga 448
           || | | |||||||||
Sbjct: 552 aacgccttcaattgga 537



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 164 tctactgattgagtctatagcctcttcctctgaaggcac 202
           |||| |||||||||||||||| |||||||||||||||||
Sbjct: 830 tctattgattgagtctatagcttcttcctctgaaggcac 792
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>ref|XM_476078.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 933

 Score =  141 bits (71), Expect = 2e-30
 Identities = 156/185 (84%)
 Strand = Plus / Minus

                                                                       
Query: 289 gtcttgaggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtataga 348
           ||||| ||||| ||||||||| | || ||||| ||||||||||  | |||||||||    
Sbjct: 599 gtcttcaggtagttctttccggtggctagcgggtgcaacactgagaggaagtagtacgtg 540

                                                                       
Query: 349 tgtccaaccagaatgcccaaaaggccaggcaatattggagagccaaatatcacatncaat 408
           |||||||| ||||| |||| ||||||||| | |||    |||||||||||||||| ||| 
Sbjct: 539 tgtccaacgagaattcccagaaggccagggagtatctctgagccaaatatcacatccaac 480

                                                                       
Query: 409 ccaagcatagcccatggtagataaaatgacctcaattggacgaggccatacatgcttatc 468
           |||||||| ||||||||||||||||| ||||||| |||||| |||||||||||||| |||
Sbjct: 479 ccaagcattgcccatggtagataaaaggacctcagttggacaaggccatacatgctgatc 420

                
Query: 469 tgaga 473
           |||||
Sbjct: 419 tgaga 415
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>emb|AJ251622.1|ZMA251622 Zea mays mRNA for putative NADH oxidoreductase (sor gene)
          Length = 1044

 Score =  141 bits (71), Expect = 2e-30
 Identities = 165/197 (83%)
 Strand = Plus / Minus

                                                                       
Query: 252 cctgaatcgagcaacaatcttgtgtacccacataggagtcttgaggtanttctttccgct 311
           ||||||||||||||||||||| ||||||||  ||||||||||||||||  |||| ||| |
Sbjct: 711 cctgaatcgagcaacaatcttatgtacccatttaggagtcttgaggtagctcttcccggt 652

                                                                       
Query: 312 agcaagcggatgcaacactgtaaagaagtagtatagatgtccaaccagaatgcccaaaag 371
            ||||| || | |||||||| |||| |||||||||||||||||||||  || |||| |||
Sbjct: 651 ggcaagagggtccaacactgcaaagtagtagtatagatgtccaaccatgatacccagaag 592

                                                                       
Query: 372 gccaggcaatattggagagccaaatatcacatncaatccaagcatagcccatggtagata 431
           ||| |||| || ||| || |||||||||||||  |||   |||||| ||||||| |||||
Sbjct: 591 gcctggcattaatggtgatccaaatatcacatctaataagagcataacccatggaagata 532

                            
Query: 432 aaatgacctcaattgga 448
           ||| | | |||||||||
Sbjct: 531 aaacgccttcaattgga 515
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>gb|AY109493.1| Zea mays CL1200_1 mRNA sequence
          Length = 1044

 Score =  135 bits (68), Expect = 1e-28
 Identities = 165/197 (83%), Gaps = 2/197 (1%)
 Strand = Plus / Minus

                                                                       
Query: 252 cctgaatcgagcaacaatcttgtgtacccacataggagtcttgaggtanttctttccgct 311
           ||||||||||||||||||||| |||  |||  ||||||||||||||||  |||| ||| |
Sbjct: 709 cctgaatcgagcaacaatcttatgt--ccatttaggagtcttgaggtagctcttcccggt 652

                                                                       
Query: 312 agcaagcggatgcaacactgtaaagaagtagtatagatgtccaaccagaatgcccaaaag 371
            ||||| || |||||||||| ||||||||||||||||||||||||||  || |||| |||
Sbjct: 651 ggcaagagggtgcaacactgcaaagaagtagtatagatgtccaaccatgatacccagaag 592

                                                                       
Query: 372 gccaggcaatattggagagccaaatatcacatncaatccaagcatagcccatggtagata 431
           ||| |||| || ||| || |||||||||||||  |||   |||||| ||||||| |||||
Sbjct: 591 gcctggcattaatggtgatccaaatatcacatctaataagagcataacccatggaagata 532

                            
Query: 432 aaatgacctcaattgga 448
           ||| | | |||||||||
Sbjct: 531 aaacgccttcaattgga 515
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>gb|AY854017.1| Zea mays derlin1-1 gene, complete cds
          Length = 4987

 Score =  113 bits (57), Expect = 5e-22
 Identities = 127/151 (84%)
 Strand = Plus / Minus

                                                                        
Query: 284  taggagtcttgaggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagt 343
            ||||||||||||||||  |||| ||| | ||||| || |||||||||| |||||||||||
Sbjct: 4232 taggagtcttgaggtagctcttcccggtggcaagagggtgcaacactgcaaagaagtagt 4173

                                                                        
Query: 344  atagatgtccaaccagaatgcccaaaaggccaggcaatattggagagccaaatatcacat 403
            | |||||||||||||  || |||| ||| ||||||| || ||  || |||||||||||||
Sbjct: 4172 agagatgtccaaccatgatacccagaagtccaggcattaatgatgatccaaatatcacat 4113

                                           
Query: 404  ncaatccaagcatagcccatggtagataaaa 434
             ||||   |||||||||||||| ||||||||
Sbjct: 4112 ccaataagagcatagcccatggaagataaaa 4082



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 252  cctgaatcgagcaacaatctt 272
            |||||||||||||||||||||
Sbjct: 4400 cctgaatcgagcaacaatctt 4380
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>gb|AY854018.1| Zea mays derlin1-2 gene, complete cds
          Length = 7166

 Score =  109 bits (55), Expect = 8e-21
 Identities = 125/149 (83%)
 Strand = Plus / Minus

                                                                        
Query: 286  ggagtcttgaggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtat 345
            |||||||||||||| ||||||||| | || || || |||||||||| |||| ||||||||
Sbjct: 3978 ggagtcttgaggtagttctttccggtggcgagagggtgcaacactgcaaagtagtagtat 3919

                                                                        
Query: 346  agatgtccaaccagaatgcccaaaaggccaggcaatattggagagccaaatatcacatnc 405
            |||||||||||||  || |||| |||||| |||| || ||| || |||||||||||||  
Sbjct: 3918 agatgtccaaccatgatacccagaaggcctggcattaatggtgatccaaatatcacatct 3859

                                         
Query: 406  aatccaagcatagcccatggtagataaaa 434
            |||   |||||| ||||||| ||||||||
Sbjct: 3858 aataagagcataacccatggaagataaaa 3830



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 164  tctactgattgagtctatagcctcttcctctgaaggcac 202
            |||| |||||||||||||||| |||||||||||||||||
Sbjct: 4345 tctattgattgagtctatagcttcttcctctgaaggcac 4307



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  ctgaatcgagcaacaatctt 272
            ||||||||||||||||||||
Sbjct: 4147 ctgaatcgagcaacaatctt 4128
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>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10,
             complete sequence
          Length = 153366

 Score =  103 bits (52), Expect = 5e-19
 Identities = 131/158 (82%)
 Strand = Plus / Plus

                                                                         
Query: 277   acccacataggagtcttgaggtanttctttccgctagcaagcggatgcaacactgtaaag 336
             |||||||| || ||||| ||||| ||||||||| | || ||||| ||||||||||  | |
Sbjct: 25259 acccacattggtgtcttcaggtagttctttccggtggctagcgggtgcaacactgagagg 25318

                                                                         
Query: 337   aagtagtatagatgtccaaccagaatgcccaaaaggccaggcaatattggagagccaaat 396
             ||||||||    |||||||| ||||| |||| ||||||||| | |||    |||||||||
Sbjct: 25319 aagtagtacgtgtgtccaacgagaattcccagaaggccagggagtatctctgagccaaat 25378

                                                   
Query: 397   atcacatncaatccaagcatagcccatggtagataaaa 434
             ||||||| ||| |||||||| |||||||||||||||||
Sbjct: 25379 atcacatccaacccaagcattgcccatggtagataaaa 25416



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 438   cctcaattggacgaggccatacatgcttatctgaga 473
             ||||| |||||| |||||||||||||| ||||||||
Sbjct: 25538 cctcagttggacaaggccatacatgctgatctgaga 25573



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   ctgaatcgagcaacaatctt 272
             ||||||||||||||||||||
Sbjct: 25124 ctgaatcgagcaacaatctt 25143
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>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10,
             complete sequence
          Length = 102275

 Score =  103 bits (52), Expect = 5e-19
 Identities = 131/158 (82%)
 Strand = Plus / Plus

                                                                         
Query: 277   acccacataggagtcttgaggtanttctttccgctagcaagcggatgcaacactgtaaag 336
             |||||||| || ||||| ||||| ||||||||| | || ||||| ||||||||||  | |
Sbjct: 24099 acccacattggtgtcttcaggtagttctttccggtggctagcgggtgcaacactgagagg 24158

                                                                         
Query: 337   aagtagtatagatgtccaaccagaatgcccaaaaggccaggcaatattggagagccaaat 396
             ||||||||    |||||||| ||||| |||| ||||||||| | |||    |||||||||
Sbjct: 24159 aagtagtacgtgtgtccaacgagaattcccagaaggccagggagtatctctgagccaaat 24218

                                                   
Query: 397   atcacatncaatccaagcatagcccatggtagataaaa 434
             ||||||| ||| |||||||| |||||||||||||||||
Sbjct: 24219 atcacatccaacccaagcattgcccatggtagataaaa 24256



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 438   cctcaattggacgaggccatacatgcttatctgaga 473
             ||||| |||||| |||||||||||||| ||||||||
Sbjct: 24378 cctcagttggacaaggccatacatgctgatctgaga 24413



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   ctgaatcgagcaacaatctt 272
             ||||||||||||||||||||
Sbjct: 23964 ctgaatcgagcaacaatctt 23983
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  103 bits (52), Expect = 5e-19
 Identities = 131/158 (82%)
 Strand = Plus / Plus

                                                                           
Query: 277     acccacataggagtcttgaggtanttctttccgctagcaagcggatgcaacactgtaaag 336
               |||||||| || ||||| ||||| ||||||||| | || ||||| ||||||||||  | |
Sbjct: 5338585 acccacattggtgtcttcaggtagttctttccggtggctagcgggtgcaacactgagagg 5338644

                                                                           
Query: 337     aagtagtatagatgtccaaccagaatgcccaaaaggccaggcaatattggagagccaaat 396
               ||||||||    |||||||| ||||| |||| ||||||||| | |||    |||||||||
Sbjct: 5338645 aagtagtacgtgtgtccaacgagaattcccagaaggccagggagtatctctgagccaaat 5338704

                                                     
Query: 397     atcacatncaatccaagcatagcccatggtagataaaa 434
               ||||||| ||| |||||||| |||||||||||||||||
Sbjct: 5338705 atcacatccaacccaagcattgcccatggtagataaaa 5338742



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                   
Query: 438     cctcaattggacgaggccatacatgcttatctgaga 473
               ||||| |||||| |||||||||||||| ||||||||
Sbjct: 5338864 cctcagttggacaaggccatacatgctgatctgaga 5338899



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 253     ctgaatcgagcaacaatctt 272
               ||||||||||||||||||||
Sbjct: 5338450 ctgaatcgagcaacaatctt 5338469
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>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12,
             complete sequence
          Length = 88725

 Score =  103 bits (52), Expect = 5e-19
 Identities = 131/158 (82%)
 Strand = Plus / Plus

                                                                         
Query: 277   acccacataggagtcttgaggtanttctttccgctagcaagcggatgcaacactgtaaag 336
             |||||||| || ||||| ||||| ||||||||| | || ||||| ||||||||||  | |
Sbjct: 75286 acccacattggtgtcttcaggtagttctttccggtggctagcgggtgcaacactgagagg 75345

                                                                         
Query: 337   aagtagtatagatgtccaaccagaatgcccaaaaggccaggcaatattggagagccaaat 396
             ||||||||    |||||||| ||||| |||| ||||||||| | |||    |||||||||
Sbjct: 75346 aagtagtacgtgtgtccaacgagaattcccagaaggccagggagtatctctgagccaaat 75405

                                                   
Query: 397   atcacatncaatccaagcatagcccatggtagataaaa 434
             ||||||| ||| |||||||| |||||||||||||||||
Sbjct: 75406 atcacatccaacccaagcattgcccatggtagataaaa 75443



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 438   cctcaattggacgaggccatacatgcttatctgaga 473
             ||||| |||||| |||||||||||||| ||||||||
Sbjct: 75565 cctcagttggacaaggccatacatgctgatctgaga 75600



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   ctgaatcgagcaacaatctt 272
             ||||||||||||||||||||
Sbjct: 75151 ctgaatcgagcaacaatctt 75170
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>ref|NM_119078.3| Arabidopsis thaliana unknown protein AT4G29330 mRNA, complete cds
          Length = 1079

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 295 aggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtatagatgtcca 354
           ||||| || |||||| ||||||| ||||| |  ||||| | |||||||||||||||||||
Sbjct: 708 aggtagttttttccggtagcaagaggatgaaggactgttaggaagtagtatagatgtcca 649
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>gb|AY096457.1| Arabidopsis thaliana unknown protein (At4g29330) mRNA, complete cds
          Length = 832

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 295 aggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtatagatgtcca 354
           ||||| || |||||| ||||||| ||||| |  ||||| | |||||||||||||||||||
Sbjct: 593 aggtagttttttccggtagcaagaggatgaaggactgttaggaagtagtatagatgtcca 534
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>gb|AY063817.1| Arabidopsis thaliana unknown protein (At4g29330) mRNA, complete cds
          Length = 1095

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 295 aggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtatagatgtcca 354
           ||||| || |||||| ||||||| ||||| |  ||||| | |||||||||||||||||||
Sbjct: 710 aggtagttttttccggtagcaagaggatgaaggactgttaggaagtagtatagatgtcca 651
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>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                          
Query: 295    aggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtatagatgtcca 354
              ||||| || |||||| ||||||| ||||| |  ||||| | |||||||||||||||||||
Sbjct: 174730 aggtagttttttccggtagcaagaggatgaaggactgttaggaagtagtatagatgtcca 174671
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>emb|BX826348.1|CNS0A38I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB18ZD09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 962

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 295 aggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtatagatgtcca 354
           ||||| || |||||| ||||||| ||||| |  ||||| | |||||||||||||||||||
Sbjct: 649 aggtagttttttccggtagcaagaggatgaaggactgttaggaagtagtatagatgtcca 590
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>emb|BX841558.1|CNS09YFE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH46ZD04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1024

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 295 aggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtatagatgtcca 354
           ||||| || |||||| ||||||| ||||| |  ||||| | |||||||||||||||||||
Sbjct: 340 aggtagttttttccggtagcaagaggatgaaggactgttaggaagtagtatagatgtcca 399
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>gb|U43323.1|ATU43323 Arabidopsis thaliana profilin 2 and profilin 3 genes, complete cds
          Length = 5329

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 295 aggtanttctttccgctagcaagcggatgcaacactgtaaagaagtagtatagatgtcca 354
           ||||| || |||||| ||||||| ||||| |  ||||| | |||||||||||||||||||
Sbjct: 550 aggtagttttttccggtagcaagaggatgaaggactgttaggaagtagtatagatgtcca 491
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>gb|BC019175.1| Mus musculus methylmalonyl-Coenzyme A mutase, mRNA (cDNA clone
            MGC:29139 IMAGE:5007694), complete cds
          Length = 2590

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 77   aacccggattcctagagctgc 97
            |||||||||||||||||||||
Sbjct: 2286 aacccggattcctagagctgc 2306
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>dbj|AK148304.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched
          library, clone:G370084A13
          product:methylmalonyl-Coenzyme A mutase, full insert
          sequence
          Length = 1777

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 77 aacccggattcctagagctgc 97
          |||||||||||||||||||||
Sbjct: 68 aacccggattcctagagctgc 88
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>gb|AC116326.5| Mus musculus BAC clone RP24-64C6 from chromosome 7, complete sequence
          Length = 181548

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   agtctatagcctcttcctct 194
             ||||||||||||||||||||
Sbjct: 24205 agtctatagcctcttcctct 24186
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>ref|XM_947497.1| Theileria annulata strain Ankara hypothetical protein (TA11460)
           partial mRNA
          Length = 630

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 329 ctgtaaagaagtagtatagatgtccaac 356
           |||||||||||||||| | |||||||||
Sbjct: 541 ctgtaaagaagtagtaaatatgtccaac 514
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>gb|AC087045.7| Homo sapiens chromosome 8, clone CTD-2342N23, complete sequence
          Length = 121280

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    attcctagagctgccagagt 103
             ||||||||||||||||||||
Sbjct: 36451 attcctagagctgccagagt 36432
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>gb|AC090213.6| Homo sapiens chromosome 18, clone RP11-760L24, complete sequence
          Length = 170907

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ttcctctgaaggcactaggg 207
             ||||||||||||||||||||
Sbjct: 10081 ttcctctgaaggcactaggg 10100
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>gb|AC083843.5| Homo sapiens chromosome 8, clone RP11-157B5, complete sequence
          Length = 159032

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     attcctagagctgccagagt 103
              ||||||||||||||||||||
Sbjct: 124336 attcctagagctgccagagt 124317
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>gb|AC010776.10| Homo sapiens chromosome 18, clone RP11-2N1, complete sequence
          Length = 181252

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ttcctctgaaggcactaggg 207
             ||||||||||||||||||||
Sbjct: 88535 ttcctctgaaggcactaggg 88554
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>gb|AC084265.4| Homo sapiens chromosome 2, clone CTB-2367F13, complete sequence
          Length = 127066

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    ctgccagagtttagattggatcca 117
             ||||||||||| ||||||||||||
Sbjct: 16277 ctgccagagttcagattggatcca 16254
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>gb|AC027684.3| Homo sapiens chromosome 16 clone RP11-148F10, complete sequence
          Length = 187520

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    ttcctctgaaggcactaggg 207
              ||||||||||||||||||||
Sbjct: 183257 ttcctctgaaggcactaggg 183238
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>gb|AC151837.4| Mus musculus BAC clone RP23-330A14 from chromosome 7, complete sequence
          Length = 209661

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   agtctatagcctcttcctct 194
             ||||||||||||||||||||
Sbjct: 73779 agtctatagcctcttcctct 73760
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>gb|AC108476.5| Homo sapiens BAC clone RP11-1413K20 from 2, complete sequence
          Length = 139342

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    ctgccagagtttagattggatcca 117
             ||||||||||| ||||||||||||
Sbjct: 14467 ctgccagagttcagattggatcca 14444
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>gb|AC018768.7| Homo sapiens chromosome 16 clone RP11-564M2, complete sequence
          Length = 198093

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   ttcctctgaaggcactaggg 207
             ||||||||||||||||||||
Sbjct: 76881 ttcctctgaaggcactaggg 76862
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>dbj|BS000137.1| Pan troglodytes chromosome 22 clone:LA-PCR-1, map 22, complete
            sequences
          Length = 10010

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  aatgcccaaaaggccaggca 379
            ||||||||||||||||||||
Sbjct: 3963 aatgcccaaaaggccaggca 3982
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>gb|AC125270.7| Mus musculus chromosome 5, clone RP24-150L20, complete sequence
          Length = 174834

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   cttcctctgaaggcactagg 206
             ||||||||||||||||||||
Sbjct: 84348 cttcctctgaaggcactagg 84367
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>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   aatgcccaaaaggccaggca 379
             ||||||||||||||||||||
Sbjct: 88134 aatgcccaaaaggccaggca 88153
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>emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chromosome 4, complete
             sequence
          Length = 187392

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   tgagtctatagcctcttcct 192
             ||||||||||||||||||||
Sbjct: 24544 tgagtctatagcctcttcct 24563
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>dbj|AP001472.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:B804K23, telomere
             region, complete sequence
          Length = 26467

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   aatgcccaaaaggccaggca 379
             ||||||||||||||||||||
Sbjct: 10409 aatgcccaaaaggccaggca 10428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,894,651
Number of Sequences: 3902068
Number of extensions: 2894651
Number of successful extensions: 44946
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44870
Number of HSP's gapped (non-prelim): 72
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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