ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7i02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independen... 29 7.4
2LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-la... 29 7.4
3LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independen... 29 7.4
4LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent ... 29 7.4
5CHI1_STROI (P29115) Chitinases 70, 30, and 20.5 kDa (EC 3.2.1.14... 29 9.6

>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent|
           alpha-latrotoxin receptor 1)
          Length = 1472

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 474 WCKHKHQQXXXXXSVPIIGRRTITVCEEQSWSQFIRSLH 358
           WCK   Q       +P I  RT T+ E  SW  ++ + H
Sbjct: 163 WCKDPLQAGDRIYVMPWIPYRTDTLTEYASWEDYVAARH 201



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>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin|
           receptor 1) (Lectomedin-2) (Fragment)
          Length = 1406

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 474 WCKHKHQQXXXXXSVPIIGRRTITVCEEQSWSQFIRSLH 358
           WCK   Q       +P I  RT T+ E  SW  ++ + H
Sbjct: 98  WCKDPLQAGDRIYVMPWIPYRTDTLTEYASWEDYVAARH 136



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>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent|
           alpha-latrotoxin receptor 1) (Lectomedin-2)
          Length = 1474

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 474 WCKHKHQQXXXXXSVPIIGRRTITVCEEQSWSQFIRSLH 358
           WCK   Q       +P I  RT T+ E  SW  ++ + H
Sbjct: 163 WCKDPLQAGDRIYVMPWIPYRTDTLTEYASWEDYVAARH 201



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>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent|
           alpha-latrotoxin receptor 1) (CIRL-1)
          Length = 1515

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 474 WCKHKHQQXXXXXSVPIIGRRTITVCEEQSWSQFIRSLH 358
           WCK   Q       +P I  RT T+ E  SW  ++ + H
Sbjct: 163 WCKDPLQAGDRIYVMPWIPYRTDTLTEYASWEDYVAARH 201



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>CHI1_STROI (P29115) Chitinases 70, 30, and 20.5 kDa (EC 3.2.1.14) (Fragments)|
          Length = 74

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 420 Q*WGRCFD--WMIAGACACTTFANW 488
           Q WG CF+  W I    AC+++ +W
Sbjct: 12  QDWGSCFEGKWTIKNTAACSSYPSW 36


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,846,033
Number of Sequences: 219361
Number of extensions: 1433009
Number of successful extensions: 3255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3255
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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