ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7i02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4,... 149 1e-32
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
3dbj|AK102779.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
4emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 149 1e-32
5emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 149 1e-32
6ref|XM_474358.1| Oryza sativa (japonica cultivar-group), predic... 139 1e-29
7gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
9gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, comple... 42 1.8
10gb|AE014302.1| Homo sapiens chromosome 13q34 schizophrenia regio... 42 1.8
11gb|AC157984.17| Medicago truncatula clone mth2-142a1, complete s... 42 1.8
12emb|AL139800.10| Human DNA sequence from clone RP11-219L22 on ch... 42 1.8
13gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 42 1.8
14ref|NM_120355.1| Arabidopsis thaliana unknown protein AT5G02770 ... 40 7.3
15ref|NM_120354.2| Arabidopsis thaliana catalytic/ protein phospha... 40 7.3
16gb|AC165162.4| Mus musculus BAC clone RP23-173L24 from chromosom... 40 7.3
17emb|AL033536.1|CEY53C10A Caenorhabditis elegans YAC Y53C10A, com... 40 7.3
18gb|AC154411.2| Mus musculus BAC clone RP24-221F4 from chromosome... 40 7.3
19gb|AC120000.17| Mus musculus chromosome 3, clone RP24-133F9, com... 40 7.3
20gb|AY070401.1| Arabidopsis thaliana At5g02770 mRNA sequence 40 7.3
21emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BA... 40 7.3
22gb|AC103846.2| Homo sapiens chromosome 8, clone RP11-645H17, com... 40 7.3
23gb|AC104393.6| Homo sapiens chromosome 8, clone CTD-3080F16, com... 40 7.3
24gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, co... 40 7.3
25gb|AC154518.2| Mus musculus BAC clone RP23-211K12 from chromosom... 40 7.3
26dbj|AK221715.1| Arabidopsis thaliana mRNA for putative protein, ... 40 7.3
27gb|AC158545.2| Mus musculus 10 BAC RP24-401G4 (Roswell Park Canc... 40 7.3
28gb|AC024341.9|AC024341 Homo sapiens chromosome 11, clone RP11-33... 40 7.3
29gb|AF378893.1|AF378893 Arabidopsis thaliana AT5g02770/F9G14_80 m... 40 7.3
30ref|XM_394934.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 7.3
31gb|AY962392.1| Aeromonas phage 31, complete genome 40 7.3
32gb|AC151896.3| Mus musculus BAC clone RP24-501F15 from 18, compl... 40 7.3
33emb|CT009534.18| Mouse DNA sequence from clone RP23-106A16 on ch... 40 7.3 
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10,
              complete sequence
          Length = 150206

 Score =  149 bits (75), Expect = 1e-32
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                          
Query: 233    tctcacgcttgctttacacttgaactgggaaaccgaaattctgaaacactctgatttctc 292
              |||||| || ||||||||||||||| ||||| ||||||||||| ||||| || ||||| |
Sbjct: 144185 tctcacactagctttacacttgaaccgggaagccgaaattctggaacaccctaatttcac 144126

                                                                          
Query: 293    ctccctgtcccgcggtgacaatcaccaaaccccacgcggaccggcgctggacatccatgg 352
              | |||  ||| || |||||||||||||| ||||| || ||||||||||| |||||||  |
Sbjct: 144125 caccccttcctgcagtgacaatcaccaatccccaagctgaccggcgctgaacatccaaag 144066

                                                                 
Query: 353    ctccgatgcaaagatcggatgaactgtgaccaggactgctcttcgcagacg 403
              |||| |||||||| |||||||| | |||||||||||||||||| |||||||
Sbjct: 144065 ctccaatgcaaaggtcggatgagcagtgaccaggactgctcttggcagacg 144015



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 458    tgcttgtgcttgcaccaccttcgcaaactgggc 490
              |||||||||||||| ||||||| ||||||||||
Sbjct: 143966 tgcttgtgcttgcaacaccttcacaaactgggc 143934
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  149 bits (75), Expect = 1e-32
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                            
Query: 233      tctcacgcttgctttacacttgaactgggaaaccgaaattctgaaacactctgatttctc 292
                |||||| || ||||||||||||||| ||||| ||||||||||| ||||| || ||||| |
Sbjct: 34690064 tctcacactagctttacacttgaaccgggaagccgaaattctggaacaccctaatttcac 34690005

                                                                            
Query: 293      ctccctgtcccgcggtgacaatcaccaaaccccacgcggaccggcgctggacatccatgg 352
                | |||  ||| || |||||||||||||| ||||| || ||||||||||| |||||||  |
Sbjct: 34690004 caccccttcctgcagtgacaatcaccaatccccaagctgaccggcgctgaacatccaaag 34689945

                                                                   
Query: 353      ctccgatgcaaagatcggatgaactgtgaccaggactgctcttcgcagacg 403
                |||| |||||||| |||||||| | |||||||||||||||||| |||||||
Sbjct: 34689944 ctccaatgcaaaggtcggatgagcagtgaccaggactgctcttggcagacg 34689894



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 458      tgcttgtgcttgcaccaccttcgcaaactgggc 490
                |||||||||||||| ||||||| ||||||||||
Sbjct: 34689845 tgcttgtgcttgcaacaccttcacaaactgggc 34689813
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>dbj|AK102779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107J24, full
            insert sequence
          Length = 2955

 Score =  149 bits (75), Expect = 1e-32
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                        
Query: 233  tctcacgcttgctttacacttgaactgggaaaccgaaattctgaaacactctgatttctc 292
            |||||| || ||||||||||||||| ||||| ||||||||||| ||||| || ||||| |
Sbjct: 2678 tctcacactagctttacacttgaaccgggaagccgaaattctggaacaccctaatttcac 2619

                                                                        
Query: 293  ctccctgtcccgcggtgacaatcaccaaaccccacgcggaccggcgctggacatccatgg 352
            | |||  ||| || |||||||||||||| ||||| || ||||||||||| |||||||  |
Sbjct: 2618 caccccttcctgcagtgacaatcaccaatccccaagctgaccggcgctgaacatccaaag 2559

                                                               
Query: 353  ctccgatgcaaagatcggatgaactgtgaccaggactgctcttcgcagacg 403
            |||| |||||||| |||||||| | |||||||||||||||||| |||||||
Sbjct: 2558 ctccaatgcaaaggtcggatgagcagtgaccaggactgctcttggcagacg 2508



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 458  tgcttgtgcttgcaccaccttcgcaaactgggc 490
            |||||||||||||| ||||||| ||||||||||
Sbjct: 2459 tgcttgtgcttgcaacaccttcacaaactgggc 2427
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>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete
             sequence
          Length = 100836

 Score =  149 bits (75), Expect = 1e-32
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                         
Query: 233   tctcacgcttgctttacacttgaactgggaaaccgaaattctgaaacactctgatttctc 292
             |||||| || ||||||||||||||| ||||| ||||||||||| ||||| || ||||| |
Sbjct: 88292 tctcacactagctttacacttgaaccgggaagccgaaattctggaacaccctaatttcac 88233

                                                                         
Query: 293   ctccctgtcccgcggtgacaatcaccaaaccccacgcggaccggcgctggacatccatgg 352
             | |||  ||| || |||||||||||||| ||||| || ||||||||||| |||||||  |
Sbjct: 88232 caccccttcctgcagtgacaatcaccaatccccaagctgaccggcgctgaacatccaaag 88173

                                                                
Query: 353   ctccgatgcaaagatcggatgaactgtgaccaggactgctcttcgcagacg 403
             |||| |||||||| |||||||| | |||||||||||||||||| |||||||
Sbjct: 88172 ctccaatgcaaaggtcggatgagcagtgaccaggactgctcttggcagacg 88122



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 458   tgcttgtgcttgcaccaccttcgcaaactgggc 490
             |||||||||||||| ||||||| ||||||||||
Sbjct: 88073 tgcttgtgcttgcaacaccttcacaaactgggc 88041
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>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete
             sequence
          Length = 103264

 Score =  149 bits (75), Expect = 1e-32
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                         
Query: 233   tctcacgcttgctttacacttgaactgggaaaccgaaattctgaaacactctgatttctc 292
             |||||| || ||||||||||||||| ||||| ||||||||||| ||||| || ||||| |
Sbjct: 33388 tctcacactagctttacacttgaaccgggaagccgaaattctggaacaccctaatttcac 33329

                                                                         
Query: 293   ctccctgtcccgcggtgacaatcaccaaaccccacgcggaccggcgctggacatccatgg 352
             | |||  ||| || |||||||||||||| ||||| || ||||||||||| |||||||  |
Sbjct: 33328 caccccttcctgcagtgacaatcaccaatccccaagctgaccggcgctgaacatccaaag 33269

                                                                
Query: 353   ctccgatgcaaagatcggatgaactgtgaccaggactgctcttcgcagacg 403
             |||| |||||||| |||||||| | |||||||||||||||||| |||||||
Sbjct: 33268 ctccaatgcaaaggtcggatgagcagtgaccaggactgctcttggcagacg 33218



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 458   tgcttgtgcttgcaccaccttcgcaaactgggc 490
             |||||||||||||| ||||||| ||||||||||
Sbjct: 33169 tgcttgtgcttgcaacaccttcacaaactgggc 33137
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>ref|XM_474358.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2460

 Score =  139 bits (70), Expect = 1e-29
 Identities = 136/158 (86%)
 Strand = Plus / Minus

                                                                        
Query: 246  ttacacttgaactgggaaaccgaaattctgaaacactctgatttctcctccctgtcccgc 305
            |||||||||||| ||||| ||||||||||| ||||| || ||||| || |||  ||| ||
Sbjct: 2460 ttacacttgaaccgggaagccgaaattctggaacaccctaatttcaccaccccttcctgc 2401

                                                                        
Query: 306  ggtgacaatcaccaaaccccacgcggaccggcgctggacatccatggctccgatgcaaag 365
             |||||||||||||| ||||| || ||||||||||| |||||||  ||||| ||||||||
Sbjct: 2400 agtgacaatcaccaatccccaagctgaccggcgctgaacatccaaagctccaatgcaaag 2341

                                                  
Query: 366  atcggatgaactgtgaccaggactgctcttcgcagacg 403
             |||||||| | |||||||||||||||||| |||||||
Sbjct: 2340 gtcggatgagcagtgaccaggactgctcttggcagacg 2303



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 458  tgcttgtgcttgcaccaccttcgcaaactgggc 490
            |||||||||||||| ||||||| ||||||||||
Sbjct: 2254 tgcttgtgcttgcaacaccttcacaaactgggc 2222
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>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0019D02, complete sequence
          Length = 154692

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                        
Query: 233   tctcacgcttgctttacacttgaactgggaaaccgaaattctg 275
             ||||||||| ||||||||||||||||||||| || ||||||||
Sbjct: 82778 tctcacgctagctttacacttgaactgggaagccaaaattctg 82736



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 331   gaccggcgctggacatccatggctccgatgcaaagatcggatga 374
             |||||| |||| |||||||  |||||||||||||  ||||||||
Sbjct: 82715 gaccggagctgaacatccaaagctccgatgcaaaagtcggatga 82672
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                           
Query: 233      tctcacgcttgctttacacttgaactgggaaaccgaaattctg 275
                ||||||||| ||||||||||||||||||||| || ||||||||
Sbjct: 19037514 tctcacgctagctttacacttgaactgggaagccaaaattctg 19037472



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 331      gaccggcgctggacatccatggctccgatgcaaagatcggatga 374
                |||||| |||| |||||||  |||||||||||||  ||||||||
Sbjct: 19037451 gaccggagctgaacatccaaagctccgatgcaaaagtcggatga 19037408
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>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence
          Length = 221903

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    acagataaatgtattggtgtt 71
             |||||||||||||||||||||
Sbjct: 59982 acagataaatgtattggtgtt 60002
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>gb|AE014302.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 2 of
              3 of the complete sequence
          Length = 277196

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 119    aagtgagctctcaaggcatcaaaac 143
              ||||||||||||||| |||||||||
Sbjct: 185284 aagtgagctctcaagccatcaaaac 185260
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>gb|AC157984.17| Medicago truncatula clone mth2-142a1, complete sequence
          Length = 122915

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 33     aaaacaaccaagatatgaacagata 57
              ||||||||||||||||| |||||||
Sbjct: 120214 aaaacaaccaagatatgcacagata 120190



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 33     aaaacaaccaagatatgaacagata 57
              ||||||||||||||||| |||||||
Sbjct: 105830 aaaacaaccaagatatgcacagata 105854
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>emb|AL139800.10| Human DNA sequence from clone RP11-219L22 on chromosome 13 Contains
             part of the ITGBL1 gene for integrin, beta-like 1 (with
             EGF-like repeat domains), complete sequence
          Length = 99173

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 119   aagtgagctctcaaggcatcaaaac 143
             ||||||||||||||| |||||||||
Sbjct: 59014 aagtgagctctcaagccatcaaaac 58990
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 265     ccgaaattctgaaacactctg 285
               |||||||||||||||||||||
Sbjct: 2040125 ccgaaattctgaaacactctg 2040145
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>ref|NM_120355.1| Arabidopsis thaliana unknown protein AT5G02770 mRNA, complete cds
          Length = 1622

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 450  attgctggtgcttgtgcttg 469
            ||||||||||||||||||||
Sbjct: 1119 attgctggtgcttgtgcttg 1100
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>ref|NM_120354.2| Arabidopsis thaliana catalytic/ protein phosphatase type 2C AT5G02760
            mRNA, complete cds
          Length = 2112

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 450  attgctggtgcttgtgcttg 469
            ||||||||||||||||||||
Sbjct: 2041 attgctggtgcttgtgcttg 2060
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>gb|AC165162.4| Mus musculus BAC clone RP23-173L24 from chromosome 3, complete sequence
          Length = 211699

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 26    tataaggaaaacaaccaagatatg 49
             |||||||||||||||| |||||||
Sbjct: 66328 tataaggaaaacaacctagatatg 66351
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>emb|AL033536.1|CEY53C10A Caenorhabditis elegans YAC Y53C10A, complete sequence
          Length = 78153

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aaaacaaccaagatatgaac 52
             ||||||||||||||||||||
Sbjct: 36534 aaaacaaccaagatatgaac 36515
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>gb|AC154411.2| Mus musculus BAC clone RP24-221F4 from chromosome 17, complete sequence
          Length = 174229

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    agtgtggtttttaaagtgag 125
              ||||||||||||||||||||
Sbjct: 146295 agtgtggtttttaaagtgag 146314
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>gb|AC120000.17| Mus musculus chromosome 3, clone RP24-133F9, complete sequence
          Length = 149389

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    tataaggaaaacaaccaagatatg 49
             |||||||||||||||| |||||||
Sbjct: 74215 tataaggaaaacaacctagatatg 74192
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>gb|AY070401.1| Arabidopsis thaliana At5g02770 mRNA sequence
          Length = 1737

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 450  attgctggtgcttgtgcttg 469
            ||||||||||||||||||||
Sbjct: 1118 attgctggtgcttgtgcttg 1099
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>emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F9G14 (ESSA project)
          Length = 104769

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   attgctggtgcttgtgcttg 469
             ||||||||||||||||||||
Sbjct: 23098 attgctggtgcttgtgcttg 23117
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>gb|AC103846.2| Homo sapiens chromosome 8, clone RP11-645H17, complete sequence
          Length = 171133

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   actctgatttctcctccctg 299
             ||||||||||||||||||||
Sbjct: 34320 actctgatttctcctccctg 34339
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>gb|AC104393.6| Homo sapiens chromosome 8, clone CTD-3080F16, complete sequence
          Length = 188270

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   actctgatttctcctccctg 299
             ||||||||||||||||||||
Sbjct: 42197 actctgatttctcctccctg 42216
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>gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, complete sequence
          Length = 171501

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 493    tcaatgtatctgtgactgtgagcagttc 520
              |||||||||||| ||||||||| |||||
Sbjct: 107302 tcaatgtatctgagactgtgaggagttc 107275
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>gb|AC154518.2| Mus musculus BAC clone RP23-211K12 from chromosome 16, complete
             sequence
          Length = 177189

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    tatgaacagataaatgtatt 65
             ||||||||||||||||||||
Sbjct: 55589 tatgaacagataaatgtatt 55608
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>dbj|AK221715.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone:
            RAFL16-93-E13
          Length = 1655

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 450  attgctggtgcttgtgcttg 469
            ||||||||||||||||||||
Sbjct: 1115 attgctggtgcttgtgcttg 1096
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>gb|AC158545.2| Mus musculus 10 BAC RP24-401G4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 203847

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    gaaaacaaccaagatatgaa 51
             ||||||||||||||||||||
Sbjct: 70558 gaaaacaaccaagatatgaa 70539
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>gb|AC024341.9|AC024341 Homo sapiens chromosome 11, clone RP11-336F14, complete sequence
          Length = 165260

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    aatagtgtggtttttaaagt 122
              ||||||||||||||||||||
Sbjct: 132496 aatagtgtggtttttaaagt 132515
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>gb|AF378893.1|AF378893 Arabidopsis thaliana AT5g02770/F9G14_80 mRNA, complete cds
          Length = 1622

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 450  attgctggtgcttgtgcttg 469
            ||||||||||||||||||||
Sbjct: 1119 attgctggtgcttgtgcttg 1100
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>ref|XM_394934.2| PREDICTED: Apis mellifera similar to ENSANGP00000018415 (LOC411459),
            mRNA
          Length = 3990

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   aaatgtattggtgttaacca 76
            ||||||||||||||||||||
Sbjct: 1038 aaatgtattggtgttaacca 1057
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>gb|AY962392.1| Aeromonas phage 31, complete genome
          Length = 172963

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   gatgattgctggtgcttgtg 465
             ||||||||||||||||||||
Sbjct: 99081 gatgattgctggtgcttgtg 99100
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>gb|AC151896.3| Mus musculus BAC clone RP24-501F15 from 18, complete sequence
          Length = 189528

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   tttaaagtgagctctcaagg 134
             ||||||||||||||||||||
Sbjct: 67030 tttaaagtgagctctcaagg 67049
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>emb|CT009534.18| Mouse DNA sequence from clone RP23-106A16 on chromosome 17, complete
             sequence
          Length = 195558

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   agtgtggtttttaaagtgag 125
             ||||||||||||||||||||
Sbjct: 27864 agtgtggtttttaaagtgag 27883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,636,329
Number of Sequences: 3902068
Number of extensions: 4636329
Number of successful extensions: 89490
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89347
Number of HSP's gapped (non-prelim): 143
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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