ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7h24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ386610.1| Hordeum vulgare subsp. vulgare protein kinase ABC... 165 2e-37
2gb|BT017897.1| Zea mays clone EL01N0515G04.c mRNA sequence 153 8e-34
3gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 127 4e-26
4ref|XM_480354.1| Oryza sativa (japonica cultivar-group), mRNA 94 6e-16
5emb|X56004.1|TAGSTAGST Wheat gstA2 gene for glutathione-S-transf... 94 6e-16
6dbj|AB095006.1| Triticum aestivum Wcor15 gene for chloroplast-ta... 94 6e-16
7gb|AF509769.1| Hordeum vulgare subsp. vulgare isolate NRG027 Rpg... 80 9e-12
8gb|AY104723.1| Zea mays PCO115255 mRNA sequence 74 6e-10
9gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete ... 62 2e-06
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
11dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
12dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
13emb|X64254.1|HVMRNA H.vulgare mRNA for seed protein B32E 58 3e-05
14dbj|AB201446.1| Triticum aestivum wSSII-B gene for starch syntha... 56 1e-04
15emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene 46 0.13
16gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 46 0.13
17gb|AC020687.6| Homo sapiens chromosome 15, clone RP11-648K4, com... 44 0.50
18gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 44 0.50
19gb|AC063947.30| Homo sapiens 12 BAC RP11-350G24 (Roswell Park Ca... 42 2.0
20emb|BX470112.27| Zebrafish DNA sequence from clone DKEYP-1B2 in ... 42 2.0
21dbj|AK094601.1| Homo sapiens cDNA FLJ37282 fis, clone BRAMY2013216 42 2.0
22dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 2.0
23emb|AL954343.10| Zebrafish DNA sequence from clone CH211-226B4, ... 42 2.0
24emb|AM039951.1| Xanthomonas campestris pv. vesicatoria plasmid p... 40 7.9
25gb|AE012317.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 7.9
26gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromoso... 40 7.9
27gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 7.9
28gb|AC102038.9| Mus musculus chromosome 19, clone RP23-248G20, co... 40 7.9
29gb|AC090023.20| Homo sapiens 12 BAC RP11-221N13 (Roswell Park Ca... 40 7.9
30gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome... 40 7.9
31emb|AL844529.10| Mouse DNA sequence from clone RP23-138J20 on ch... 40 7.9
32gb|AF051097.1|AF051097 Balanoglossus carnosus mitochondrial DNA,... 40 7.9
33gb|M32142.1|XANAVR X.campestris avirulence protein (avrBs1) gene... 40 7.9 
>gb|DQ386610.1| Hordeum vulgare subsp. vulgare protein kinase ABC1063 gene, complete
            cds
          Length = 7813

 Score =  165 bits (83), Expect = 2e-37
 Identities = 148/166 (89%), Gaps = 3/166 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    atgataccgtatn-tattaaatgttgtgctagtatgtgtcatgcatgacaataaatgaac 63
            ||||||||||||  ||||||||| ||| ||| |||||||| |||||||||||| ||||||
Sbjct: 2840 atgataccgtatcatattaaatgatgtactactatgtgtcttgcatgacaatagatgaac 2781

                                                                        
Query: 64   taccgtatgatactaatatatgatgctatgcattacggatgtggtatcatacactagtat 123
            |||  ||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||
Sbjct: 2780 tacattatgatactaacatatgatactatgcattagggatgtagtatcatacactagtat 2721

                                                          
Query: 124  cat-gatat-atactagtgtatgatactacccattacaaccagcct 167
            |||  | || |||||||| |||||||||||||||||||||||||||
Sbjct: 2720 catatacatgatactagtatatgatactacccattacaaccagcct 2675



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                        
Query: 18   tattaaatgttgtgctagtatgtgtcatgcatgacaataaatgaactaccgtatgatact 77
            ||||||||| ||||||| |||||||| ||||||||||||||||||||| | |||||||||
Sbjct: 2419 tattaaatgatgtgctactatgtgtcttgcatgacaataaatgaactatcctatgatact 2360

                  
Query: 78   aatata 83
            ||||||
Sbjct: 2359 aatata 2354



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 81/91 (89%), Gaps = 4/91 (4%)
 Strand = Plus / Minus

                                                                        
Query: 82   tatgatgctatgcattacggatgtggtatcatacactagtatcatgat--at-atactag 138
            |||||| |||||||||||| ||| ||||||||||||||||| ||| ||  || |||||||
Sbjct: 2193 tatgatactatgcattacgaatgcggtatcatacactagtaccat-atgcatgatactag 2135

                                           
Query: 139  tgtatgatactacccattacaaccagcctaa 169
            | ||||| |||||||||||||||||||||||
Sbjct: 2134 tatatgacactacccattacaaccagcctaa 2104



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 44/47 (93%), Gaps = 2/47 (4%)
 Strand = Plus / Plus

                                                           
Query: 107  gtatcatacactagtatcatg-atat-atactagtgtatgatactac 151
            |||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct: 2694 gtatcatatactagtatcatgtatatgatactagtgtatgatactac 2740
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>gb|BT017897.1| Zea mays clone EL01N0515G04.c mRNA sequence
          Length = 1433

 Score =  153 bits (77), Expect = 8e-34
 Identities = 175/206 (84%), Gaps = 2/206 (0%)
 Strand = Plus / Minus

                                                                        
Query: 376  ctagcatgggaagtttgactgctnttgaatttcaccaacaggaagttcaacagcaaagtt 435
            ||||||||||||||| ||||||| ||||| |||||||||||||||||| || ||||||||
Sbjct: 1137 ctagcatgggaagttcgactgctcttgaacttcaccaacaggaagttctactgcaaagtt 1078

                                                                        
Query: 436  agcttgggcatccgcatntgcattaaactccctcaaaacatggttgatttgaaactgaag 495
            |||||| ||||| |||   | |||| | ||||||||||||||  |||||||||| | || 
Sbjct: 1077 agcttgagcatcagcagccgaattatattccctcaaaacatgtctgatttgaaa-taaat 1019

                                                                        
Query: 496  gaaa-cttcccttcaggtccttgactttnttgcacaagtccgccatattatcattcctaa 554
            ||||  ||||||| || ||||| ||||| ||||| |||   ||||||||||||||| |||
Sbjct: 1018 gaaatgttccctttagctccttcactttcttgcagaagctagccatattatcattcttaa 959

                                      
Query: 555  cacgccagaggtcttggacctggtta 580
            |||||||||  |||||||||||||||
Sbjct: 958  cacgccagatatcttggacctggtta 933
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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/155 (85%), Gaps = 2/155 (1%)
 Strand = Plus / Minus

                                                                          
Query: 18     tattaaatgttgtgctagtatgtgtcatgcatgacaataaatgaactaccgtatgatact 77
              ||||||||| ||||||| |||||||| || ||| |||||||||||||||  ||||||| |
Sbjct: 218885 tattaaatgatgtgctactatgtgtcttgtatggcaataaatgaactacactatgatagt 218826

                                                                          
Query: 78     aatatatgatgctatgcattacggatgtggtatcatacactagtatcat--gatatatac 135
              || ||||||| ||||| |||||||||||||| |||||  ||||||||||  ||   ||| 
Sbjct: 218825 aacatatgatactatgtattacggatgtggtgtcatatgctagtatcatatgaatgatat 218766

                                                 
Query: 136    tagtgtatgatactacccattacaaccagcctaac 170
              |||| ||||||||||||||||||||| ||||||||
Sbjct: 218765 tagtatatgatactacccattacaacgagcctaac 218731
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>ref|XM_480354.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1056

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 125/149 (83%), Gaps = 2/149 (1%)
 Strand = Plus / Minus

                                                                        
Query: 414  caggaagttcaacagcaaagttagcttgggcatccgcatntgcattaaactccctcaaaa 473
            ||||||||||||| || ||||||||||| ||||| ||||  |  ||||| ||||||||||
Sbjct: 1006 caggaagttcaacggctaagttagcttgagcatcagcatccgtgttaaattccctcaaaa 947

                                                                        
Query: 474  catggttgatttgaaactgaaggaaa-cttcccttcaggtccttgactttnttgcacaag 532
            |||||||||||||||| || | |||| |||||||| |  ||||| ||  | |||||||||
Sbjct: 946  catggttgatttgaaa-tgtatgaaatcttcccttaatttccttaacccttttgcacaag 888

                                         
Query: 533  tccgccatattatcattcctaacacgcca 561
            || |||||| |||||| |||| |||||||
Sbjct: 887  tcagccatagtatcatgcctagcacgcca 859
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>emb|X56004.1|TAGSTAGST Wheat gstA2 gene for glutathione-S-transferase
          Length = 3196

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 94/107 (87%), Gaps = 2/107 (1%)
 Strand = Plus / Minus

                                                                       
Query: 21  taaatgttgtgctagtatgtgtcatgcatgacaataaatg-aactaccgtatgatactaa 79
           |||||||| ||||| |||||||||| |||||||||||||| ||| ||| ||||||| || 
Sbjct: 626 taaatgttatgctactatgtgtcatacatgacaataaatgaaaccacc-tatgatattac 568

                                                          
Query: 80  tatatgatgctatgcattacggatgtggtatcatacactagtatcat 126
           | |||||| ||||||| || |||||| ||||||||||||||||||||
Sbjct: 567 tctatgatactatgcactatggatgtagtatcatacactagtatcat 521



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 44/47 (93%), Gaps = 2/47 (4%)
 Strand = Plus / Plus

                                                          
Query: 107 gtatcatacactagtatcatg-atat-atactagtgtatgatactac 151
           |||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct: 497 gtatcatatactagtatcatgcatatgatactagtgtatgatactac 543
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>dbj|AB095006.1| Triticum aestivum Wcor15 gene for chloroplast-targeted COR protein,
            complete cds
          Length = 4549

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                        
Query: 36   tatgtgtcatgcatgacaataaatgaactaccgtatgatactaatatatgatgctatgca 95
            |||||||||||||||  ||||||| || ||||   ||||||||||||||||| |||||||
Sbjct: 1528 tatgtgtcatgcatggtaataaataaagtaccacgtgatactaatatatgatactatgca 1587

                                           
Query: 96   ttacggatgtggtatcatacactagtatcat 126
            ||| ||| || ||||||||||||||||||||
Sbjct: 1588 ttagggaggtagtatcatacactagtatcat 1618



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 132  atactagtgtatgatactacc 152
            |||||||||||||||||||||
Sbjct: 1615 atactagtgtatgatactacc 1595
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>gb|AF509769.1| Hordeum vulgare subsp. vulgare isolate NRG027 Rpg1 region, genomic
           sequence
          Length = 3424

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 107/127 (84%), Gaps = 2/127 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattatgataccgtatn-tattaaatgttgtgctagtatgtgtcatgcatgacaataaat 59
           ||||||||||||||||  ||||||||||||||||| ||| | |||||| ||| |||||||
Sbjct: 486 tattatgataccgtatcatattaaatgttgtgctactatat-tcatgcgtgataataaat 428

                                                                       
Query: 60  gaactaccgtatgatactaatatatgatgctatgcattacggatgtggtatcatacacta 119
            ||      ||||||||||  | ||||| |||||||||| |||||| |||||||||||||
Sbjct: 427 aaatcgttatatgatactagcacatgatactatgcattagggatgtagtatcatacacta 368

                  
Query: 120 gtatcat 126
           |||||||
Sbjct: 367 gtatcat 361



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 36/38 (94%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                 
Query: 116 actagtatcatg-atat-atactagtgtatgatactac 151
           |||||||||||| |||| ||||||||||||||||||||
Sbjct: 346 actagtatcatgcatatgatactagtgtatgatactac 383



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                        
Query: 141 tatgatactacccattacaaccagcctaa 169
           ||||||||| |||||||||||||||||||
Sbjct: 566 tatgatact-cccattacaaccagcctaa 593
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>gb|AY104723.1| Zea mays PCO115255 mRNA sequence
          Length = 1053

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 501 ttcccttcaggtccttgactttnttgcacaagtccgccatattatcattcctaacacgcc 560
           ||||||| || ||||| ||||| ||||| |||   ||||||||||||||| |||||||||
Sbjct: 985 ttccctttagctccttcactttcttgcagaagctagccatattatcattcttaacacgcc 926

                               
Query: 561 agaggtcttggacctggtta 580
           |||  |||||||||||||||
Sbjct: 925 agatatcttggacctggtta 906
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>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
          Length = 102433

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                         
Query: 20    ttaaatgttgtgctagtatgtgtcatgcatgacaataaatgaactaccgtatgatactaa 79
             ||||||| | ||||| ||||||||||||||| ||||||||||  |    |||||||||| 
Sbjct: 81421 ttaaatgctttgctactatgtgtcatgcatgtcaataaatgagatcatctatgatactac 81362

                                                            
Query: 80    tatatgatgctatgcattacggatgtggtatcatacactagtatcat 126
             | |||||| |||||||||| | |  | |||||||||| |||||||||
Sbjct: 81361 tttatgatactatgcattatgaagatagtatcatacaatagtatcat 81315
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 83/98 (84%), Gaps = 2/98 (2%)
 Strand = Plus / Plus

                                                                           
Query: 465     ccctcaaaacatggttgatttgaaactgaaggaaa-cttcccttcaggtccttgactttn 523
               ||||||||||||||||||||||||| || | |||| |||||||| |  ||||| ||  | 
Sbjct: 4560863 ccctcaaaacatggttgatttgaaa-tgtatgaaatcttcccttaatttccttaaccctt 4560921

                                                     
Query: 524     ttgcacaagtccgccatattatcattcctaacacgcca 561
               ||||||||||| |||||| |||||| |||| |||||||
Sbjct: 4560922 ttgcacaagtcagccatagtatcatgcctagcacgcca 4560959



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                      
Query: 414     caggaagttcaacagcaaagttagcttgggcatccgcat 452
               ||||||||||||| || ||||||||||| ||||| ||||
Sbjct: 4560521 caggaagttcaacggctaagttagcttgagcatcagcat 4560559
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>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_C08
          Length = 150300

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 83/98 (84%), Gaps = 2/98 (2%)
 Strand = Plus / Plus

                                                                         
Query: 465   ccctcaaaacatggttgatttgaaactgaaggaaa-cttcccttcaggtccttgactttn 523
             ||||||||||||||||||||||||| || | |||| |||||||| |  ||||| ||  | 
Sbjct: 84711 ccctcaaaacatggttgatttgaaa-tgtatgaaatcttcccttaatttccttaaccctt 84769

                                                   
Query: 524   ttgcacaagtccgccatattatcattcctaacacgcca 561
             ||||||||||| |||||| |||||| |||| |||||||
Sbjct: 84770 ttgcacaagtcagccatagtatcatgcctagcacgcca 84807



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 414   caggaagttcaacagcaaagttagcttgggcatccgcat 452
             ||||||||||||| || ||||||||||| ||||| ||||
Sbjct: 84369 caggaagttcaacggctaagttagcttgagcatcagcat 84407
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>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0583B06
          Length = 134442

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 83/98 (84%), Gaps = 2/98 (2%)
 Strand = Plus / Plus

                                                                          
Query: 465    ccctcaaaacatggttgatttgaaactgaaggaaa-cttcccttcaggtccttgactttn 523
              ||||||||||||||||||||||||| || | |||| |||||||| |  ||||| ||  | 
Sbjct: 126753 ccctcaaaacatggttgatttgaaa-tgtatgaaatcttcccttaatttccttaaccctt 126811

                                                    
Query: 524    ttgcacaagtccgccatattatcattcctaacacgcca 561
              ||||||||||| |||||| |||||| |||| |||||||
Sbjct: 126812 ttgcacaagtcagccatagtatcatgcctagcacgcca 126849



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 414    caggaagttcaacagcaaagttagcttgggcatccgcat 452
              ||||||||||||| || ||||||||||| ||||| ||||
Sbjct: 126411 caggaagttcaacggctaagttagcttgagcatcagcat 126449
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>emb|X64254.1|HVMRNA H.vulgare mRNA for seed protein B32E
          Length = 2384

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                       
Query: 30  tgctagtatgtgtcatgcatgacaataaatgaactaccgtatgatactaatatatgatgc 89
           ||||| ||||||||||||||| ||||||||||  |  | |||||||||| | |||||| |
Sbjct: 75  tgctattatgtgtcatgcatgtcaataaatgagatcacctatgatactagtttatgatac 134

                                                
Query: 90  tatgcattacggatgtggtatcatacactagtatcat 126
           |||||| ||   | || |||||||||| |||||||||
Sbjct: 135 tatgcagtataaaggtagtatcatacaatagtatcat 171
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>dbj|AB201446.1| Triticum aestivum wSSII-B gene for starch synthase II-B, complete cds
          Length = 6811

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 78/92 (84%), Gaps = 2/92 (2%)
 Strand = Plus / Plus

                                                                        
Query: 36   tatgtgtcatgcatgacaataaatga-actaccgtatgatactaatatatgatgctatgc 94
            |||||||||||||||||||||||||| || | | | ||||||||   ||||||  |||||
Sbjct: 4259 tatgtgtcatgcatgacaataaatgagaccatc-tgtgatactacgttatgatattatgc 4317

                                            
Query: 95   attacggatgtggtatcatacactagtatcat 126
            | ||  ||||| ||||||||||||||||||||
Sbjct: 4318 actatagatgtagtatcatacactagtatcat 4349



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 41/43 (95%), Gaps = 2/43 (4%)
 Strand = Plus / Minus

                                                       
Query: 111  catacactagtatcatg-atat-atactagtgtatgatactac 151
            ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 4369 catacactagtatcatgcatatgatactagtgtatgatactac 4327
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>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene
          Length = 10815

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 43/47 (91%), Gaps = 2/47 (4%)
 Strand = Plus / Plus

                                                           
Query: 107  gtatcatacactagtatcatg-atat-atactagtgtatgatactac 151
            |||||||| |||||||||||| |||| ||| ||||||||||||||||
Sbjct: 8767 gtatcatatactagtatcatgcatatgatattagtgtatgatactac 8813



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 89   ctatgcattacggatgtggtatcatacactagtatcat 126
            ||||||||||| || || ||||||||||||| ||||||
Sbjct: 8828 ctatgcattaccgaagtagtatcatacactaatatcat 8791
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 74/91 (81%)
 Strand = Plus / Plus

                                                                         
Query: 36    tatgtgtcatgcatgacaataaatgaactaccgtatgatactaatatatgatgctatgca 95
             ||||||||||||||| |||||||| |  |    |||||||||| | |||||| |||||||
Sbjct: 71908 tatgtgtcatgcatgtcaataaataaggtcatctatgatactactttatgatactatgca 71967

                                            
Query: 96    ttacggatgtggtatcatacactagtatcat 126
              || | | || |||||||||| |||||||||
Sbjct: 71968 ctatgaaggtagtatcatacagtagtatcat 71998
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>gb|AC020687.6| Homo sapiens chromosome 15, clone RP11-648K4, complete sequence
          Length = 169571

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 193    tcatacaaaaatctagacacaa 214
              ||||||||||||||||||||||
Sbjct: 152224 tcatacaaaaatctagacacaa 152203
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 30    tgctagtatgtgtcatgcatgacaataaat 59
             ||||| ||||||||||||||| ||||||||
Sbjct: 30642 tgctactatgtgtcatgcatgtcaataaat 30613
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>gb|AC063947.30| Homo sapiens 12 BAC RP11-350G24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 196877

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    aaatgaactaccgtatgatac 76
             |||||||||||||||||||||
Sbjct: 75291 aaatgaactaccgtatgatac 75271
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>emb|BX470112.27| Zebrafish DNA sequence from clone DKEYP-1B2 in linkage group 12, complete
              sequence
          Length = 155303

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    acacaatttcctcctaacatc 229
              |||||||||||||||||||||
Sbjct: 139770 acacaatttcctcctaacatc 139750
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>dbj|AK094601.1| Homo sapiens cDNA FLJ37282 fis, clone BRAMY2013216
          Length = 2669

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 77 taatatatgatgctatgcatt 97
          |||||||||||||||||||||
Sbjct: 82 taatatatgatgctatgcatt 62
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 94      cattacggatgtggtatcata 114
               |||||||||||||||||||||
Sbjct: 2079274 cattacggatgtggtatcata 2079294
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>emb|AL954343.10| Zebrafish DNA sequence from clone CH211-226B4, complete sequence
          Length = 198352

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 461    aactccctcaaaacatggttgattt 485
              |||||||||||||||||| ||||||
Sbjct: 193238 aactccctcaaaacatgggtgattt 193214
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>emb|AM039951.1| Xanthomonas campestris pv. vesicatoria plasmid pXCV183, complete genome
          Length = 182572

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     tgtcatgcatgacaataaat 59
              ||||||||||||||||||||
Sbjct: 114767 tgtcatgcatgacaataaat 114786
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>gb|AE012317.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 225
           of 460 of the complete genome
          Length = 10992

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  tgtcatgcatgacaataaat 59
           ||||||||||||||||||||
Sbjct: 729 tgtcatgcatgacaataaat 710
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>gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromosome 1, complete sequence
          Length = 192460

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    acaatttcctcctaacatct 230
              ||||||||||||||||||||
Sbjct: 171912 acaatttcctcctaacatct 171931
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      tgtcatgcatgacaataaat 59
               ||||||||||||||||||||
Sbjct: 2498332 tgtcatgcatgacaataaat 2498351
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>gb|AC102038.9| Mus musculus chromosome 19, clone RP23-248G20, complete sequence
          Length = 159945

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   ctagtgtatgatactaccca 154
             ||||||||||||||||||||
Sbjct: 68273 ctagtgtatgatactaccca 68292
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>gb|AC090023.20| Homo sapiens 12 BAC RP11-221N13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114177

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   aaactgaaggaaacttccct 506
             ||||||||||||||||||||
Sbjct: 34010 aaactgaaggaaacttccct 33991
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>gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome unknown, complete
              sequence
          Length = 250515

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    acaatttcctcctaacatct 230
              ||||||||||||||||||||
Sbjct: 152156 acaatttcctcctaacatct 152175
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>emb|AL844529.10| Mouse DNA sequence from clone RP23-138J20 on chromosome 2, complete
             sequence
          Length = 132763

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   gaagttcaacagcaaagtta 436
             ||||||||||||||||||||
Sbjct: 54139 gaagttcaacagcaaagtta 54120
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>gb|AF051097.1|AF051097 Balanoglossus carnosus mitochondrial DNA, complete genome
          Length = 15708

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   tagtatgtgtcatgcatgac 52
            ||||||||||||||||||||
Sbjct: 6294 tagtatgtgtcatgcatgac 6275
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>gb|M32142.1|XANAVR X.campestris avirulence protein (avrBs1) gene, complete cds
          Length = 2100

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  tgtcatgcatgacaataaat 59
           ||||||||||||||||||||
Sbjct: 398 tgtcatgcatgacaataaat 379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,067,373
Number of Sequences: 3902068
Number of extensions: 4067373
Number of successful extensions: 71669
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71525
Number of HSP's gapped (non-prelim): 137
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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