ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7h22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF000939.1|AF000939 Hordeum vulgare aleurone ribonuclease mRN... 478 e-132
2ref|NM_193078.2| Oryza sativa (japonica cultivar-group), mRNA 113 6e-22
3ref|XM_506490.1| PREDICTED Oryza sativa (japonica cultivar-group... 113 6e-22
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
5dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
6dbj|AK104512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 6e-22
7dbj|AK060320.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 6e-22
8gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 48 0.028
9ref|XM_597536.2| PREDICTED: Bos taurus similar to transcription ... 44 0.44
10emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 44 0.44
11gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Ca... 42 1.7
12gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.7
13dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.7
14ref|NM_190089.1| Oryza sativa (japonica cultivar-group), predic... 40 6.8
15gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.8
16gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
17gb|AY658221.1| Synthetic construct Peudomonas aeruginosa clone F... 40 6.8
18gb|AC129567.8| Mus musculus chromosome 8, clone RP23-50L10, comp... 40 6.8
19ref|XM_814667.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.8
20ref|XM_815876.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.8
21gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 6.8
22emb|AL109618.1|HSJ775C13 Human DNA sequence from clone RP4-775C1... 40 6.8
23emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 40 6.8
24emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 6.8
25emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 6.8
26gb|AC119741.3| Homo sapiens 3 BAC RP11-570O24 (Roswell Park Canc... 40 6.8
27gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 40 6.8
28gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complet... 40 6.8
29gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.8
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
31dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
33gb|AC008666.5|AC008666 Homo sapiens chromosome 5 clone CTB-35A8,... 40 6.8
34dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
35dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
36dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.8
37gb|AE004851.1| Pseudomonas aeruginosa PAO1, section 412 of 529 o... 40 6.8
38gb|AE004512.1| Pseudomonas aeruginosa PAO1, section 73 of 529 of... 40 6.8
39dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.8
40gb|AE005041.1| Halobacterium sp. NRC-1 section 72 of 170 of the ... 40 6.8
41dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.8
42gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequ... 40 6.8
43dbj|AK070064.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.8
44emb|BX470240.8| Zebrafish DNA sequence from clone CH211-92L17 in... 40 6.8
45gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.8
46gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
47gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8 
>gb|AF000939.1|AF000939 Hordeum vulgare aleurone ribonuclease mRNA, partial cds
          Length = 739

 Score =  478 bits (241), Expect = e-132
 Identities = 248/249 (99%), Gaps = 1/249 (0%)
 Strand = Plus / Minus

                                                                       
Query: 257 gaaggccggcagctggaccctgtctttgcagttgccctgcatcggcagcgggcagtcgat 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaaggccggcagctggaccctgtctttgcagttgccctgcatcggcagcgggcagtcgat 680

                                                                       
Query: 317 gaggttctccccgtcgcggtcgatgcactggtacacctggaacagctgcgtctcgccgtc 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaggttctccccgtcgcggtcgatgcactggtacacctggaacagctgcgtctcgccgtc 620

                                                                       
Query: 377 gacgccacggttgcactccaggttcgccgtgaacccggtcccctccctgatggcgtccct 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gacgccacggttgcactccaggttcgccgtgaacccggtcccctccctgatggcgtccct 560

                                                                       
Query: 437 gatgctgctgaggaagtaggtctcggtgtcggacggcacgatccccggcgtcggcgagga 496
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 559 gatgctgctgaggaagtaggtctcggtgtcggacggcacgat-cccggcgtcggcgagga 501

                    
Query: 497 tgctggtga 505
           |||||||||
Sbjct: 500 tgctggtga 492
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>ref|NM_193078.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1085

 Score =  113 bits (57), Expect = 6e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 347
           |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 793 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 734

                                                                
Query: 348 tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 400
           ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 733 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 681
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>ref|XM_506490.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.133 mRNA
          Length = 1097

 Score =  113 bits (57), Expect = 6e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 347
           |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 795 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 736

                                                                
Query: 348 tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 400
           ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 735 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 683
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 6e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                            
Query: 288      ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 347
                |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 26089039 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 26088980

                                                                     
Query: 348      tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 400
                ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 26088979 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 26088927
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>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0011H09
          Length = 147992

 Score =  113 bits (57), Expect = 6e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                          
Query: 288    ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 347
              |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 122601 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 122542

                                                                   
Query: 348    tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 400
              ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 122541 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 122489
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>dbj|AK104512.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H11, full
           insert sequence
          Length = 1085

 Score =  113 bits (57), Expect = 6e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 347
           |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 793 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 734

                                                                
Query: 348 tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 400
           ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 733 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 681
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>dbj|AK060320.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F07, full
           insert sequence
          Length = 1097

 Score =  113 bits (57), Expect = 6e-22
 Identities = 99/113 (87%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttgccctgcatcggcagcgggcagtcgatgaggttctccccgtcgcggtcgatgcactgg 347
           |||||||||||||| ||  ||||||||| ||| |||| ||||  |||||||| |||||||
Sbjct: 795 ttgccctgcatcgggagttggcagtcgacgagcttcttcccggagcggtcgacgcactgg 736

                                                                
Query: 348 tacacctggaacagctgcgtctcgccgtcgacgccacggttgcactccaggtt 400
           ||||||||||||||||||||||||||| || || | ||||||||||| |||||
Sbjct: 735 tacacctggaacagctgcgtctcgccggcggcgtcgcggttgcactcgaggtt 683
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 459     tcggtgtcggacggcacgatcccc 482
               ||||||||||||||||||||||||
Sbjct: 4644310 tcggtgtcggacggcacgatcccc 4644287
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>ref|XM_597536.2| PREDICTED: Bos taurus similar to transcription factor-like nuclear
            regulator (LOC519320), mRNA
          Length = 4251

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 434  cctgatgctgctgaggaagtag 455
            ||||||||||||||||||||||
Sbjct: 3727 cctgatgctgctgaggaagtag 3748
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 353    ctggaacagctgcgtctcgccgtcga 378
              |||||||||| |||||||||||||||
Sbjct: 688667 ctggaacagcggcgtctcgccgtcga 688692
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>gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 72022

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 432   tccctgatgctgctgaggaag 452
             |||||||||||||||||||||
Sbjct: 49769 tccctgatgctgctgaggaag 49749
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 151    aatccagccgcgcgccgtgca 171
              |||||||||||||||||||||
Sbjct: 679144 aatccagccgcgcgccgtgca 679124
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 171     agatggccggccgcgtcgagc 191
               |||||||||||||||||||||
Sbjct: 6052564 agatggccggccgcgtcgagc 6052584
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>ref|NM_190089.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3132

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 486 gtcggcgaggatgctggtga 505
           ||||||||||||||||||||
Sbjct: 951 gtcggcgaggatgctggtga 970
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 482     cggcgtcggcgaggatgctg 501
               ||||||||||||||||||||
Sbjct: 3955526 cggcgtcggcgaggatgctg 3955545
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>gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0045D11
              map near 50283S, complete sequence
          Length = 148306

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    cgacgggcggcggcaatgga 229
              ||||||||||||||||||||
Sbjct: 115281 cgacgggcggcggcaatgga 115300
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>gb|AY658221.1| Synthetic construct Peudomonas aeruginosa clone FLH052493.01F
           PA0777 gene, partial cds
          Length = 753

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 157 gccgcgcgccgtgcagatgg 176
           ||||||||||||||||||||
Sbjct: 195 gccgcgcgccgtgcagatgg 214
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>gb|AC129567.8| Mus musculus chromosome 8, clone RP23-50L10, complete sequence
          Length = 228046

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   ctggtacacctggaacagct 363
             ||||||||||||||||||||
Sbjct: 50172 ctggtacacctggaacagct 50191
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>ref|XM_814667.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506825.190) partial mRNA
          Length = 1368

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 483 ggcgtcggcgaggatgctgg 502
           ||||||||||||||||||||
Sbjct: 655 ggcgtcggcgaggatgctgg 674
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>ref|XM_815876.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508175.90) partial mRNA
          Length = 1554

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 483 ggcgtcggcgaggatgctgg 502
           ||||||||||||||||||||
Sbjct: 841 ggcgtcggcgaggatgctgg 860
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 457     tctcggtgtcggacggcacg 476
               ||||||||||||||||||||
Sbjct: 1685560 tctcggtgtcggacggcacg 1685579
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>emb|AL109618.1|HSJ775C13 Human DNA sequence from clone RP4-775C13 on chromosome 20p12.1-13
             Contains an NS1-associated protein 1 (NSAP1) pseudogene,
             complete sequence
          Length = 103819

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   caacacaaaggtacatccat 145
             ||||||||||||||||||||
Sbjct: 65107 caacacaaaggtacatccat 65088
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>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    tctcggtgtcggacggcacg 476
              ||||||||||||||||||||
Sbjct: 152991 tctcggtgtcggacggcacg 152972
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   tctcggtgtcggacggcacg 476
             ||||||||||||||||||||
Sbjct: 82130 tctcggtgtcggacggcacg 82149
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 162    gcgccgtgcagatggccggccgcgtcga 189
              |||| ||||||||||| |||||||||||
Sbjct: 241408 gcgcggtgcagatggcgggccgcgtcga 241435
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>gb|AC119741.3| Homo sapiens 3 BAC RP11-570O24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191857

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    tgtctttgcagttgccctgc 296
              ||||||||||||||||||||
Sbjct: 102038 tgtctttgcagttgccctgc 102019
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>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
             sequence
          Length = 152172

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   gcgccgtgcagatggccggc 181
             ||||||||||||||||||||
Sbjct: 33128 gcgccgtgcagatggccggc 33109
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>gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complete sequence
          Length = 176629

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    aagattagaagtctttattc 40
             ||||||||||||||||||||
Sbjct: 97489 aagattagaagtctttattc 97470
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 475     cgatccccggcgtcggcgaggatg 498
               |||||||||||||| |||||||||
Sbjct: 3095396 cgatccccggcgtccgcgaggatg 3095373
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      cgacgggcggcggcaatgga 229
                ||||||||||||||||||||
Sbjct: 13982444 cgacgggcggcggcaatgga 13982463
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 162      gcgccgtgcagatggccggc 181
                ||||||||||||||||||||
Sbjct: 19343253 gcgccgtgcagatggccggc 19343272
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 486      gtcggcgaggatgctggtga 505
                ||||||||||||||||||||
Sbjct: 41216036 gtcggcgaggatgctggtga 41216055
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>gb|AC008666.5|AC008666 Homo sapiens chromosome 5 clone CTB-35A8, complete sequence
          Length = 99108

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   aagattagaagtctttattc 40
            ||||||||||||||||||||
Sbjct: 1414 aagattagaagtctttattc 1433
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>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1150F11
          Length = 130355

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 486   gtcggcgaggatgctggtga 505
             ||||||||||||||||||||
Sbjct: 32951 gtcggcgaggatgctggtga 32970
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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504E02
          Length = 137468

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    gtcggcgaggatgctggtga 505
              ||||||||||||||||||||
Sbjct: 113091 gtcggcgaggatgctggtga 113110
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 162     gcgccgtgcagatggccggccgcgtcga 189
               ||||||||||| ||| ||||||||||||
Sbjct: 2808375 gcgccgtgcagctggacggccgcgtcga 2808402
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>gb|AE004851.1| Pseudomonas aeruginosa PAO1, section 412 of 529 of the complete
            genome
          Length = 13101

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  cgcgcgccgtgcagatggccggcc 182
            ||||||| ||||||||||||||||
Sbjct: 6179 cgcgcgcggtgcagatggccggcc 6156
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>gb|AE004512.1| Pseudomonas aeruginosa PAO1, section 73 of 529 of the complete genome
          Length = 10081

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  gccgcgcgccgtgcagatgg 176
            ||||||||||||||||||||
Sbjct: 6749 gccgcgcgccgtgcagatgg 6730
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                           
Query: 198     gccgccacacccc-gacgggcggcggca 224
               ||||||||||||| ||||||||||||||
Sbjct: 5162600 gccgccacacccccgacgggcggcggca 5162627
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>gb|AE005041.1| Halobacterium sp. NRC-1 section 72 of 170 of the complete genome
          Length = 13759

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  cggtcccctccctgatggcg 431
            ||||||||||||||||||||
Sbjct: 2482 cggtcccctccctgatggcg 2463
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>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7
          Length = 74350

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  actcaaatttaatcagaagg 261
            ||||||||||||||||||||
Sbjct: 9263 actcaaatttaatcagaagg 9282
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>gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequence
          Length = 156330

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    ttagaactcaaatttaatca 256
              ||||||||||||||||||||
Sbjct: 130581 ttagaactcaaatttaatca 130562
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>dbj|AK070064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B03, full
            insert sequence
          Length = 3785

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 486  gtcggcgaggatgctggtga 505
            ||||||||||||||||||||
Sbjct: 1284 gtcggcgaggatgctggtga 1303
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>emb|BX470240.8| Zebrafish DNA sequence from clone CH211-92L17 in linkage group 4,
             complete sequence
          Length = 100845

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     caaatcgaaagacaagatta 27
             ||||||||||||||||||||
Sbjct: 10575 caaatcgaaagacaagatta 10594
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   catccatcacgtaatccagc 158
             ||||||||||||||||||||
Sbjct: 94660 catccatcacgtaatccagc 94641
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 162      gcgccgtgcagatggccggc 181
                ||||||||||||||||||||
Sbjct: 19354529 gcgccgtgcagatggccggc 19354548
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      cgacgggcggcggcaatgga 229
                ||||||||||||||||||||
Sbjct: 14064446 cgacgggcggcggcaatgga 14064465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,859,055
Number of Sequences: 3902068
Number of extensions: 3859055
Number of successful extensions: 71658
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70337
Number of HSP's gapped (non-prelim): 1321
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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