>PRM2_RAT (P11248) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 104

 Score = 36.2 bits (82), Expect = 0.058
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -1

Query: 448 PIHLQAQGPGLGRLGHDQGQGNRLQHQGQDRCRHTIRQHEAAHRPCRRNH 299
           P   Q QGPG      +QGQG  L  +  +    T R H   HR C+R H
Sbjct: 9   PSEGQHQGPGQDHEREEQGQGQELSPERVEDYGRTERGHHHRHRRCKRLH 58

>FILA_MOUSE (P11088) Filaggrin (Fragment)|
          Length = 336

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
 Frame = -1

Query: 523 DDKHRRGRAHRL-----HQDREAGDHQDADPIHLQAQGPGLGRLGHDQGQGN-----RLQ 374
           D +H+ G  H       HQ +   +H+  +  H Q Q  G G  G  Q QG      R  
Sbjct: 163 DSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARPRGS 222

Query: 373 HQGQDRCRH 347
           +QG    RH
Sbjct: 223 NQGHSSSRH 231

>PRM2_RATFU (Q91VE1) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 105

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = -1

Query: 430 QGPGLGRLGHDQGQGNRLQHQGQDRCRHTIRQHEAAHRPCRRN-----HSPQEG*RR*RG 266
           QGPG      +QGQG  L  +  +    T R H   HR C R      H  +   RR R 
Sbjct: 15  QGPGQDHEREEQGQGQELSPERVEDYGRTHRGHH-RHRRCSRKRLHRIHKRRRSCRRRRR 73

Query: 265 VKCCY 251
             CC+
Sbjct: 74  HSCCH 78

>MEIS3_MOUSE (P97368) Homeobox protein Meis3 (Meis1-related protein 2)|
          Length = 378

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 466 DHQDADPIHLQAQGPGLGRLGHDQGQGNRLQHQGQD 359
           DH+D+  +HL   GP  G L    G  +  Q  G D
Sbjct: 209 DHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLD 244

>MEIS3_HUMAN (Q99687) Homeobox protein Meis3 (Meis1-related protein 2)|
          Length = 375

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 466 DHQDADPIHLQAQGPGLGRLGHDQGQGNRLQHQGQD 359
           DH+D+  +HL   GP  G L    G  +  Q  G D
Sbjct: 206 DHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLD 241

>EBP2_YEAST (P36049) rRNA-processing protein EBP2 (EBNA1-binding protein|
           homolog)
          Length = 427

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 56  ERIHIGWVPTTNTEHRSIKTRTMFGRHNQQRYHELERXFSWY 181
           ER+ + W   +  EH+S+ + T    H +  Y + ER  ++Y
Sbjct: 206 ERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELAFY 247

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 496  HRLHQDREAGDHQDADPIHLQAQGPGLGRLGHDQGQGNRLQHQGQDRCRHTIRQHEA--A 323
            H++HQ  +A   Q     H Q     L +  H Q    + QHQ Q +    I+QH++   
Sbjct: 3866 HQMHQQHQAQQQQQH---HNQQH---LNQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQQ 3919

Query: 322  HRPCRRNHSPQE 287
            H+  ++N + Q+
Sbjct: 3920 HQVQQQNQAQQQ 3931

>E13B_BACCI (P23903) Glucan endo-1,3-beta-glucosidase A1 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase A1)
          Length = 682

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = -2

Query: 531 GSATTSIVEAELTDSTRIEKQGITKMQIPFTFRPKDLGSAVWDMIRGRGTGYSIKGKIDV 352
           G+  TS+      D   I K G+ K    F     + GSA W+          +   + V
Sbjct: 40  GTTVTSMEYFSPADGPVISKSGVGKASYGFVMPKFNGGSATWN---------DVYSDVGV 90

Query: 351 DTPFGNMKLPIDHVGG 304
           +   GN  + ID  GG
Sbjct: 91  NVKVGNNWVDIDQAGG 106

>PHOSP_RINDK (P35945) Phosphoprotein (Protein P)|
          Length = 507

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -1

Query: 493 RLHQDREAGDHQDADPIHLQAQGPGLGRLG--HDQGQG 386
           R+  D    DHQD       A GPG   +   HDQG G
Sbjct: 47  RMSSDEAEADHQDISKPCFPAAGPGKSSMSRCHDQGLG 84

>V_RINDK (P60169) Nonstructural protein V|
          Length = 299

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -1

Query: 493 RLHQDREAGDHQDADPIHLQAQGPGLGRLG--HDQGQG 386
           R+  D    DHQD       A GPG   +   HDQG G
Sbjct: 47  RMSSDEAEADHQDISKPCFPAAGPGKSSMSRCHDQGLG 84

>DZIP1_BRARE (Q7T019) Zinc finger protein Dzip1 (DAZ-interacting protein 1|
           homolog) (Iguana protein)
          Length = 898

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -3

Query: 413 PSGT*SGAGEPATASRARSMSTHHSAT*SCPSTMSAEPLASRRMTT 276
           P GT S AG P+  S  +S  +  S +   PSTMS  PL S   +T
Sbjct: 15  PPGTHSSAGIPSLLSSPQSQPSSGSQSRPAPSTMSG-PLTSSGAST 59

>MTH1_HAEPA (P29538) Modification methylase HpaI (EC 2.1.1.72)|
           (Adenine-specific methyltransferase HpaI) (M.HpaI)
          Length = 314

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 112 FYASVLSVRCGNPSNVYSF-RVNFVKXNRPENKFHRP 5
           +Y SV ++R  NPSNV+ F  V++   NR  +   +P
Sbjct: 142 YYRSVNNMRGANPSNVWEFSHVHYCNKNRKPHPTQKP 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,415,674
Number of Sequences: 219361
Number of extensions: 1400136
Number of successful extensions: 3405
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3403
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)