>TRMU_XYLFT (Q87DM0) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 379

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 RDPDEELLALDPGHALHLAVLDEGRHLGGVRDLPP 446
           RDP E+ +A  PG         +G ++GGVR+ PP
Sbjct: 218 RDPQEQRIAEHPGVFYFTLGQRQGLNIGGVRNRPP 252

>TRMU_XYLFA (Q9PDD9) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 379

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 342 RDPDEELLALDPGHALHLAVLDEGRHLGGVRDLPP 446
           RDP E+ +A  PG         +G ++GGVR+ PP
Sbjct: 218 RDPQEQRIAEHPGVFYFTLGQRQGLNIGGVRNRPP 252

>ENPL_CATRO (P35016) Endoplasmin homolog precursor (GRP94 homolog)|
          Length = 817

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 15/60 (25%), Positives = 34/60 (56%)
 Frame = +1

Query: 256 ETGKVLPSPVGVLKVILEGSSLSMNMSQSVIQMRSSLLLTPVMRFILRSSTKAVTSVAYE 435
           E  ++LP  +  LK +++  +L +N+S+ ++Q  SS  L  + + ++R +   +  +A E
Sbjct: 432 EFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSS--LKTIKKKLIRKALDMIRKIADE 489

>HIG_DROME (Q09101) Locomotion-related protein Hikaru genki precursor|
          Length = 958

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 459 LQADRAAGLVRHRGDGLRRGPQDEAHDRGQEQGAPHLDHALRH 331
           L A+R  G  R  G G RR  ++E    G+ +G+ +  HA+ H
Sbjct: 149 LNANRKQGKRRRAGSGRRRRIENENGQTGRGRGSRYKRHAILH 191

>ENPL_ARATH (Q9STX5) Endoplasmin homolog precursor (GRP94 homolog) (Protein|
           SHEPHERD) (HSP90-like protein 7)
          Length = 823

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/60 (25%), Positives = 34/60 (56%)
 Frame = +1

Query: 256 ETGKVLPSPVGVLKVILEGSSLSMNMSQSVIQMRSSLLLTPVMRFILRSSTKAVTSVAYE 435
           E  ++LP  +  LK +++  +L +N+S+ ++Q  SS  L  + + ++R +   +  +A E
Sbjct: 428 EFDELLPKYLSFLKGLVDSDTLPLNVSREMLQQHSS--LKTIKKKLIRKALDMIRKLAEE 485

>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -2

Query: 510 PRHRLRLXAPEEGAHAHLQADRAAGLVRHRGDGLRRGPQDEAHDRGQEQGAPHLDHALRH 331
           PR R    +P+  ++   +A R+     +R D  RR P D +H R   +G        R+
Sbjct: 385 PRRRSYSRSPQRSSNRDRRASRSPRRDSYR-DPYRRRPGDRSHSRSPARGEYRDKDRGRY 443

Query: 330 VHRQGR 313
            HR+ R
Sbjct: 444 NHRERR 449

>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
 Frame = -2

Query: 426 HRGDGLRRGPQDEAHDRGQEQG-----APHLDHALRHVHRQGRPLQDHLQXAH 283
           HR  GL + PQ   H     Q       PH  H   H H Q  P   H   AH
Sbjct: 386 HRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQHPPPHQHIQHHPNHQHQTLAH 438

>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)|
          Length = 657

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = -2

Query: 507 RHRLRLXAPEEGAHAHLQADRAAGLVRHRGDGLRRGPQDEAHDRGQEQGAPHLDHALRHV 328
           +H+    AP +  H H           H G+   + PQ      GQ+Q   H  H   H+
Sbjct: 74  QHQAPHQAPHQAHHHH-----------HHGEVNHQAPQVHQQVHGQDQAHHHHHHHHHHL 122

Query: 327 HRQ 319
           H Q
Sbjct: 123 HPQ 125

>RF1_MYCPN (P75420) Peptide chain release factor 1 (RF-1)|
          Length = 359

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 488 LRQKKALTHTFKQIGRQVSYATEVTAFVEDRKMKRMTGVKSKEL 357
           L+ K+ L   FK+  R +  A E  A +E+ ++K +     KEL
Sbjct: 42  LKHKQPLVVKFKEFKRLIDQALEAEAILENNELKELHDEAKKEL 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,630,515
Number of Sequences: 219361
Number of extensions: 918762
Number of successful extensions: 2961
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2959
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)