ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7g15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110901.1| Zea mays CL7341_1 mRNA sequence Length = 746 Score = 311 bits (157), Expect = 1e-81 Identities = 242/271 (89%) Strand = Plus / Minus Query: 248 cgaaggcggagacggggaaggtcctcccgagcccggtgggcgtnttgaaggtgatcttgg 307 ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 446 cgaaggcggagacggggtaggtcctgccgagcccggtgggcgtcttgaaggtgatcttgg 387 Query: 308 aggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatgaggagctccttgc 367 ||||||||||| |||||| |||||||||| |||| |||| ||||||||||||||||||| Sbjct: 386 aggggtcgtccctgtcgacgaacatgtcggagagggtgacccagatgaggagctccttgg 327 Query: 368 tcttgaccccggtcatgcgcttcatcttgcggtcctcgacgaaggccgtcacctcggtgg 427 |||||||||||||||||||| ||||| |||||||| |||||||| || ||||||| || Sbjct: 326 tcttgaccccggtcatgcgcctcatccgccggtcctccacgaaggcggtgacctcggcgg 267 Query: 428 cgtacgagacctgccgcccgatctgcttgaaggtgtgcgtgagcgccttcttctggcgca 487 ||||||||||||| ||| ||||| | ||| ||||||||||||| |||| ||||||||| Sbjct: 266 cgtacgagacctggcgcgcgatcgggcggaacgtgtgcgtgagcgacttcctctggcgca 207 Query: 488 gncagacgaagccggtggcgcggttgtagcc 518 | || |||||||| ||||||||||||||||| Sbjct: 206 gccacacgaagcccgtggcgcggttgtagcc 176
>dbj|AK060099.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H01, full insert sequence Length = 957 Score = 305 bits (154), Expect = 8e-80 Identities = 251/284 (88%) Strand = Plus / Minus Query: 235 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtnttg 294 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| || ||| Sbjct: 518 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 459 Query: 295 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 354 |||||||||||||||||||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 458 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcggagagggagacccagatg 399 Query: 355 aggagctccttgctcttgaccccggtcatgcgcttcatcttgcggtcctcgacgaaggcc 414 |||||||||||| ||||| ||||||| | |||||||||| |||||||||||||||||| Sbjct: 398 aggagctccttggtcttggccccggtgacgcgcttcatccggcggtcctcgacgaaggcg 339 Query: 415 gtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtgtgcgtgagcgcc 474 || ||||||| |||| |||||||||||| | |||||||||||||||||| |||| ||| Sbjct: 338 gtgacctcggcggcgaacgagacctgcctgctgatctgcttgaaggtgtgggtgatggcc 279 Query: 475 ttcttctggcgcagncagacgaagccggtggcgcggttgtagcc 518 |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 278 ttcttctggcgcagccacacgaaccccgtggcgcggttgtagcc 235
>ref|NM_188391.1| Oryza sativa (japonica cultivar-group), Ozsa8117 predicted mRNA Length = 504 Score = 297 bits (150), Expect = 2e-77 Identities = 250/284 (88%) Strand = Plus / Minus Query: 235 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtnttg 294 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| || ||| Sbjct: 428 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 369 Query: 295 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 354 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 368 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 309 Query: 355 aggagctccttgctcttgaccccggtcatgcgcttcatcttgcggtcctcgacgaaggcc 414 |||||||||||| ||||| ||||||| | |||||||||| |||||||||||||||||| Sbjct: 308 aggagctccttggtcttggccccggtgacgcgcttcatccggcggtcctcgacgaaggcg 249 Query: 415 gtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtgtgcgtgagcgcc 474 || ||||||| |||| |||||||||||| | |||||||||||||||||| |||| ||| Sbjct: 248 gtgacctcggcggcgaacgagacctgcctgctgatctgcttgaaggtgtgggtgatggcc 189 Query: 475 ttcttctggcgcagncagacgaagccggtggcgcggttgtagcc 518 |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 188 ttcttctggcgcagccacacgaaccccgtggcgcggttgtagcc 145
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 297 bits (150), Expect = 2e-77 Identities = 250/284 (88%) Strand = Plus / Plus Query: 235 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtnttg 294 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| || ||| Sbjct: 6010301 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 6010360 Query: 295 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 354 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 6010361 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 6010420 Query: 355 aggagctccttgctcttgaccccggtcatgcgcttcatcttgcggtcctcgacgaaggcc 414 |||||||||||| ||||| ||||||| | |||||||||| |||||||||||||||||| Sbjct: 6010421 aggagctccttggtcttggccccggtgacgcgcttcatccggcggtcctcgacgaaggcg 6010480 Query: 415 gtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtgtgcgtgagcgcc 474 || ||||||| |||| |||||||||||| | |||||||||||||||||| |||| ||| Sbjct: 6010481 gtgacctcggcggcgaacgagacctgcctgctgatctgcttgaaggtgtgggtgatggcc 6010540 Query: 475 ttcttctggcgcagncagacgaagccggtggcgcggttgtagcc 518 |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 6010541 ttcttctggcgcagccacacgaaccccgtggcgcggttgtagcc 6010584
>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466B10 Length = 151806 Score = 297 bits (150), Expect = 2e-77 Identities = 250/284 (88%) Strand = Plus / Plus Query: 235 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtnttg 294 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| || ||| Sbjct: 78189 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 78248 Query: 295 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 354 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 78249 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 78308 Query: 355 aggagctccttgctcttgaccccggtcatgcgcttcatcttgcggtcctcgacgaaggcc 414 |||||||||||| ||||| ||||||| | |||||||||| |||||||||||||||||| Sbjct: 78309 aggagctccttggtcttggccccggtgacgcgcttcatccggcggtcctcgacgaaggcg 78368 Query: 415 gtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtgtgcgtgagcgcc 474 || ||||||| |||| |||||||||||| | |||||||||||||||||| |||| ||| Sbjct: 78369 gtgacctcggcggcgaacgagacctgcctgctgatctgcttgaaggtgtgggtgatggcc 78428 Query: 475 ttcttctggcgcagncagacgaagccggtggcgcggttgtagcc 518 |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 78429 ttcttctggcgcagccacacgaaccccgtggcgcggttgtagcc 78472
>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031E09 Length = 176349 Score = 297 bits (150), Expect = 2e-77 Identities = 250/284 (88%) Strand = Plus / Plus Query: 235 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtnttg 294 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| || ||| Sbjct: 34658 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 34717 Query: 295 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 354 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 34718 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 34777 Query: 355 aggagctccttgctcttgaccccggtcatgcgcttcatcttgcggtcctcgacgaaggcc 414 |||||||||||| ||||| ||||||| | |||||||||| |||||||||||||||||| Sbjct: 34778 aggagctccttggtcttggccccggtgacgcgcttcatccggcggtcctcgacgaaggcg 34837 Query: 415 gtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtgtgcgtgagcgcc 474 || ||||||| |||| |||||||||||| | |||||||||||||||||| |||| ||| Sbjct: 34838 gtgacctcggcggcgaacgagacctgcctgctgatctgcttgaaggtgtgggtgatggcc 34897 Query: 475 ttcttctggcgcagncagacgaagccggtggcgcggttgtagcc 518 |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 34898 ttcttctggcgcagccacacgaaccccgtggcgcggttgtagcc 34941
>dbj|AK119774.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F06, full insert sequence Length = 787 Score = 297 bits (150), Expect = 2e-77 Identities = 250/284 (88%) Strand = Plus / Minus Query: 235 tcgtccttcttctcgaaggcggagacggggaaggtcctcccgagcccggtgggcgtnttg 294 ||||||| ||| |||||||| ||||||| ||||||||||||| |||||||| || ||| Sbjct: 520 tcgtcctccttggcgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttg 461 Query: 295 aaggtgatcttggaggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatg 354 |||||||||||||||| ||||||||||||||||||||||||| |||| | || ||||||| Sbjct: 460 aaggtgatcttggaggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatg 401 Query: 355 aggagctccttgctcttgaccccggtcatgcgcttcatcttgcggtcctcgacgaaggcc 414 |||||||||||| ||||| ||||||| | |||||||||| |||||||||||||||||| Sbjct: 400 aggagctccttggtcttggccccggtgacgcgcttcatccggcggtcctcgacgaaggcg 341 Query: 415 gtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtgtgcgtgagcgcc 474 || ||||||| |||| |||||||||||| | |||||||||||||||||| |||| ||| Sbjct: 340 gtgacctcggcggcgaacgagacctgcctgctgatctgcttgaaggtgtgggtgatggcc 281 Query: 475 ttcttctggcgcagncagacgaagccggtggcgcggttgtagcc 518 |||||||||||||| || ||||| || ||||||||||||||||| Sbjct: 280 ttcttctggcgcagccacacgaaccccgtggcgcggttgtagcc 237
>gb|BT009174.1| Triticum aestivum clone wl1n.pk0107.h1:fis, full insert mRNA sequence Length = 862 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 343 gtgatccagatgaggagctccttgctcttgaccccgg 379 |||| |||||||||||||||||||||||| ||||||| Sbjct: 407 gtgacccagatgaggagctccttgctcttcaccccgg 371
>gb|AY105303.1| Zea mays PCO075489 mRNA sequence Length = 894 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 343 gtgatccagatgaggagctccttgctcttgaccccgg 379 |||| |||||||||||||||||||||||| ||||||| Sbjct: 429 gtgacccagatgaggagctccttgctcttcaccccgg 393
>gb|AF466285.1| Oryza sativa susceptibility homeodomain transciption factor (HDTF) mRNA, partial cds Length = 580 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 348 ccagatgaggagctccttgctcttgaccccgg 379 |||||||||||||||||||||||| ||||||| Sbjct: 188 ccagatgaggagctccttgctcttcaccccgg 157
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 348 ccagatgaggagctccttgctcttgaccccgg 379 |||||||||||||||||||||||| ||||||| Sbjct: 19876477 ccagatgaggagctccttgctcttcaccccgg 19876508
>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0551A03 Length = 173027 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 348 ccagatgaggagctccttgctcttgaccccgg 379 |||||||||||||||||||||||| ||||||| Sbjct: 143522 ccagatgaggagctccttgctcttcaccccgg 143553
>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1018E06 Length = 178499 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 348 ccagatgaggagctccttgctcttgaccccgg 379 |||||||||||||||||||||||| ||||||| Sbjct: 14817 ccagatgaggagctccttgctcttcaccccgg 14848
>dbj|AK122046.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114A14, full insert sequence Length = 779 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 348 ccagatgaggagctccttgctcttgaccccgg 379 |||||||||||||||||||||||| ||||||| Sbjct: 398 ccagatgaggagctccttgctcttcaccccgg 367
>dbj|AK063825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A08, full insert sequence Length = 784 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 348 ccagatgaggagctccttgctcttgaccccgg 379 |||||||||||||||||||||||| ||||||| Sbjct: 392 ccagatgaggagctccttgctcttcaccccgg 361
>gb|AC144700.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0017H17, complete sequence Length = 156331 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 403 tcgacgaaggccgtcacctcggtggcgtacgagac 437 |||||||| |||||||||||||||||||| ||||| Sbjct: 8640 tcgacgaacgccgtcacctcggtggcgtaggagac 8606 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 403 tcgacgaaggccgtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtg 462 |||||||| ||||||||||||||||| || ||||| | || ||||| |||||||||| Sbjct: 6864 tcgacgaatgccgtcacctcggtggcataggagactgtctgcttgatcttcttgaaggtg 6805 Query: 463 tgc 465 ||| Sbjct: 6804 tgc 6802
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0074L11, complete sequence Length = 180703 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 403 tcgacgaaggccgtcacctcggtggcgtacgagac 437 |||||||| |||||||||||||||||||| ||||| Sbjct: 149850 tcgacgaacgccgtcacctcggtggcgtaggagac 149816 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 403 tcgacgaaggccgtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtg 462 |||||||| ||||||||||||||||| || ||||| | || ||||| |||||||||| Sbjct: 148074 tcgacgaatgccgtcacctcggtggcataggagactgtctgcttgatcttcttgaaggtg 148015 Query: 463 tgc 465 ||| Sbjct: 148014 tgc 148012
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 403 tcgacgaaggccgtcacctcggtggcgtacgagac 437 |||||||| |||||||||||||||||||| ||||| Sbjct: 21797797 tcgacgaacgccgtcacctcggtggcgtaggagac 21797763 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 403 tcgacgaaggccgtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtg 462 |||||||| ||||||||||||||||| || ||||| | || ||||| |||||||||| Sbjct: 21796021 tcgacgaatgccgtcacctcggtggcataggagactgtctgcttgatcttcttgaaggtg 21795962 Query: 463 tgc 465 ||| Sbjct: 21795961 tgc 21795959
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 403 tcgacgaaggccgtcacctcggtggcgtacgagac 437 |||||||| |||||||||||||||||||| ||||| Sbjct: 22107996 tcgacgaacgccgtcacctcggtggcgtaggagac 22107962 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 403 tcgacgaaggccgtcacctcggtggcgtacgagacctgccgcccgatctgcttgaaggtg 462 |||||||| ||||||||||||||||| || ||||| | || ||||| |||||||||| Sbjct: 22106220 tcgacgaatgccgtcacctcggtggcataggagactgtctgcttgatcttcttgaaggtg 22106161 Query: 463 tgc 465 ||| Sbjct: 22106160 tgc 22106158
>ref|XM_953549.1| Neurospora crassa OR74A hypothetical protein (NCU09875.1) partial mRNA Length = 1563 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 227 ccttggcgtcgtccttcttctcg 249 ||||||||||||||||||||||| Sbjct: 1432 ccttggcgtcgtccttcttctcg 1410
>ref|XM_330796.1| Neurospora crassa OR74A hypothetical protein (NCU09875.1) partial mRNA Length = 1563 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 227 ccttggcgtcgtccttcttctcg 249 ||||||||||||||||||||||| Sbjct: 1432 ccttggcgtcgtccttcttctcg 1410
>gb|AC159438.1| Trypanosoma brucei chromosome 8 clone RPCI93-29O4, complete sequence Length = 138187 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 ggactcgagaactcttcatccaatccaaac 152 ||||| ||||||||||||||| |||||||| Sbjct: 64167 ggactggagaactcttcatccgatccaaac 64196 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 ggactcgagaactcttcatccaatccaaac 152 ||||| ||||||||||||||| |||||||| Sbjct: 58033 ggactggagaactcttcatccgatccaaac 58062
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 ggactcgagaactcttcatccaatccaaac 152 ||||| ||||||||||||||| |||||||| Sbjct: 381620 ggactggagaactcttcatccgatccaaac 381649 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 123 ggactcgagaactcttcatccaatccaaac 152 ||||| ||||||||||||||| |||||||| Sbjct: 375486 ggactggagaactcttcatccgatccaaac 375515
>gb|AF507073.2| Trypanosoma brucei vacuolar-type Ca2+-ATPase gene, complete cds Length = 15626 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 123 ggactcgagaactcttcatccaatccaaac 152 ||||| ||||||||||||||| |||||||| Sbjct: 15561 ggactggagaactcttcatccgatccaaac 15532
>gb|AF359561.1| Trypanosoma brucei vacuolar-type Ca2+-ATPase (TbA1) gene, complete cds Length = 5430 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 123 ggactcgagaactcttcatccaatccaaac 152 ||||| ||||||||||||||| |||||||| Sbjct: 5365 ggactggagaactcttcatccgatccaaac 5336
>gb|CP000318.1| Polaromonas sp. JS666 plasmid 2, complete sequence Length = 338007 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 211 gcagctgcggccgtagccttgg 232 |||||||||||||||||||||| Sbjct: 102309 gcagctgcggccgtagccttgg 102330
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 191 cgacggcctccttgccgccggc 212 |||||||||||||||||||||| Sbjct: 293549 cgacggcctccttgccgccggc 293528
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 191 cgacggcctccttgccgccggc 212 |||||||||||||||||||||| Sbjct: 212435 cgacggcctccttgccgccggc 212414
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 191 cgacggcctccttgccgccggc 212 |||||||||||||||||||||| Sbjct: 36268 cgacggcctccttgccgccggc 36289
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 343 gtgatccagatgaggagctccttgctcttgaccccggt 380 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 23149543 gtgacccagatgaggagctccttggccttgacgccggt 23149506
>dbj|AK109434.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G11, full insert sequence Length = 960 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 343 gtgatccagatgaggagctccttgctcttgaccccggt 380 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 410 gtgacccagatgaggagctccttggccttgacgccggt 373
>dbj|AK105895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-E12, full insert sequence Length = 1044 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 343 gtgatccagatgaggagctccttgctcttgaccccggt 380 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 405 gtgacccagatgaggagctccttggccttgacgccggt 368
>dbj|AK069514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020B07, full insert sequence Length = 1046 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 343 gtgatccagatgaggagctccttgctcttgaccccggt 380 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 411 gtgacccagatgaggagctccttggccttgacgccggt 374
>dbj|AK060891.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C01, full insert sequence Length = 1001 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 343 gtgatccagatgaggagctccttgctcttgaccccggt 380 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 412 gtgacccagatgaggagctccttggccttgacgccggt 375
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 398 ggtcctcgacgaaggccgtcac 419 |||||||||||||||||||||| Sbjct: 850659 ggtcctcgacgaaggccgtcac 850680
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Minus Query: 343 gtgatccagatgaggagctccttgctcttgaccccggt 380 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 23077734 gtgacccagatgaggagctccttggccttgacgccggt 23077697
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 343 gtgatccagatgaggagctccttgctcttgaccccggt 380 |||| ||||||||||||||||||| |||||| ||||| Sbjct: 28854 gtgacccagatgaggagctccttggccttgacgccggt 28891
>ref|XM_653802.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1290.2), mRNA Length = 2652 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 gccttggcgtcgtccttcttc 246 ||||||||||||||||||||| Sbjct: 829 gccttggcgtcgtccttcttc 849
>gb|AY112303.1| Zea mays CL26549_1 mRNA sequence Length = 842 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 accccggtcatgcgcttcatc 393 ||||||||||||||||||||| Sbjct: 424 accccggtcatgcgcttcatc 444
>ref|NM_197370.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0076F20.19), mRNA Length = 411 Score = 40.1 bits (20), Expect = 7.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 376 ccggtcatgcgcttcatcttgcggtcctcgacgaaggccgtcacctcg 423 |||||||| ||||||||| | | ||||| ||||| |||||||||||| Sbjct: 173 ccggtcatccgcttcatcctcccttcctccacgaacgccgtcacctcg 126
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tgcggtcctcgacgaaggcc 414 |||||||||||||||||||| Sbjct: 891827 tgcggtcctcgacgaaggcc 891846
>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence Length = 214405 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tggactcgagaactcttcat 141 |||||||||||||||||||| Sbjct: 112329 tggactcgagaactcttcat 112310
>ref|XM_505045.1| Yarrowia lipolytica CLIB122, YALI0F05720g predicted mRNA Length = 366 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ggccgtcacctcggtggcgt 430 |||||||||||||||||||| Sbjct: 261 ggccgtcacctcggtggcgt 280
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 tcttgcggtcctcgacgaaggccg 415 |||||| ||||||||||||||||| Sbjct: 503496 tcttgcagtcctcgacgaaggccg 503519
>emb|AL034373.13|HS424L16 Human DNA sequence from clone RP3-424L16 on chromosome 6q12-13 Contains part of the RAB3IP2 gene for RAB3 interacting protein 2, complete sequence Length = 107484 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 atgaggagctccttgctctt 371 |||||||||||||||||||| Sbjct: 75436 atgaggagctccttgctctt 75417
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tgcggtcctcgacgaaggcc 414 |||||||||||||||||||| Sbjct: 207645 tgcggtcctcgacgaaggcc 207664
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tgcggtcctcgacgaaggcc 414 |||||||||||||||||||| Sbjct: 225748 tgcggtcctcgacgaaggcc 225767
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 gccttggcgtcgtccttcttctcg 249 |||| ||||||||||||||||||| Sbjct: 143293 gcctcggcgtcgtccttcttctcg 143270
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 cacctcggtggcgtacgaga 436 |||||||||||||||||||| Sbjct: 208960 cacctcggtggcgtacgaga 208979
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 cttgcggtcctcgacgaagg 412 |||||||||||||||||||| Sbjct: 3456706 cttgcggtcctcgacgaagg 3456725
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 40.1 bits (20), Expect = 7.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 376 ccggtcatgcgcttcatcttgcggtcctcgacgaaggccgtcacctcg 423 |||||||| ||||||||| | | ||||| ||||| |||||||||||| Sbjct: 131684 ccggtcatccgcttcatcctcccttcctccacgaacgccgtcacctcg 131731
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 376 ccggtcatgcgcttcatcttgcggtcctcgacgaaggccgtcacctcg 423 |||||||| ||||||||| | | ||||| ||||| |||||||||||| Sbjct: 19503818 ccggtcatccgcttcatcctcccttcctccacgaacgccgtcacctcg 19503865
>gb|AY833361.1| Cottus poecilopus volki cytochrome b (cytb) gene, partial cds; mitochondrial Length = 1073 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ttggcgtcgtccttcttctc 248 |||||||||||||||||||| Sbjct: 277 ttggcgtcgtccttcttctc 296
>dbj|AK119742.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-G05, full insert sequence Length = 3764 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ccttgtcgatgaacatgtcg 336 |||||||||||||||||||| Sbjct: 408 ccttgtcgatgaacatgtcg 389
>emb|Y12820.1|MTY12820 Mycobacterium tuberculosis cfp29 gene Length = 1100 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgcggtcctcgacgaaggcc 414 |||||||||||||||||||| Sbjct: 539 tgcggtcctcgacgaaggcc 520
>emb|Y13470.1|MTY13470 Mycobacterium tuberculosis gene encoding mercuric reductase/glutathione reductase/dihydrolipoamide dehydrogenase and insertion element IS1547 Length = 3627 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tgcggtcctcgacgaaggcc 414 |||||||||||||||||||| Sbjct: 3524 tgcggtcctcgacgaaggcc 3543
>gb|AF034101.2|AF034101 Streptomyces coelicolor ribosomal protein S2 (rpsB) and elongation factor Ts (tsf) genes, complete cds Length = 2162 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 gccttggcgtcgtccttcttctcg 249 |||| ||||||||||||||||||| Sbjct: 991 gcctcggcgtcgtccttcttctcg 968
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 376 ccggtcatgcgcttcatcttgcggtcctcgacgaaggccgtcacctcg 423 |||||||| ||||||||| | | ||||| ||||| |||||||||||| Sbjct: 19515094 ccggtcatccgcttcatcctcccttcctccacgaacgccgtcacctcg 19515141
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ggccgtcacctcggtggcgt 430 |||||||||||||||||||| Sbjct: 850941 ggccgtcacctcggtggcgt 850960 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,972,152 Number of Sequences: 3902068 Number of extensions: 2972152 Number of successful extensions: 52553 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51956 Number of HSP's gapped (non-prelim): 597 length of query: 520 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 497 effective length of database: 17,143,297,704 effective search space: 8520218958888 effective search space used: 8520218958888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
