>TRM1_METTH (O27258) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC|
           2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
           (tRNA 2,2-dimethylguanosine-26 methyltransferase)
           (tRNA(m(2,2)G26)dimethyltransferase)
          Length = 380

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = +3

Query: 405 PVTTVPPLMDS---------LTRVQEVQLNNLFG---KPCIARHNNRPFLSSSCHGSHIE 548
           P  T  P MDS         L  V     ++L G   KPC+ ++++RP  +  CH + + 
Sbjct: 128 PFGTPAPFMDSAAASARNNSLLAVTATDTSSLCGTYIKPCLRKYSSRPLKTEYCHETGLR 187

Query: 549 IITPF 563
           I+  F
Sbjct: 188 ILAGF 192

>LRP8_CHICK (Q98931) Low-density lipoprotein receptor-related protein 8|
           precursor (Apolipoprotein E receptor 2) (LR8B protein)
          Length = 917

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
 Frame = -3

Query: 543 CDFHGNCW--KEMGGCYVSQCRVFRTGC*AGLLVP**GSP*EVGQWLPDNSSCCDLGSDC 370
           CD   +C    +   C    C      C  G  +P         +W  D    C  GSD 
Sbjct: 48  CDEDNDCSDNSDEADCPKKTCAETDFACDNGHCIP--------DRWKCDGEEECSDGSDE 99

Query: 369 TDLKCTKK--EAYR*NSRDTENICFPQS-ACEGEMVQES 262
           ++  CTK+   A + +  D  N C P S  C+G+   ES
Sbjct: 100 SEAACTKQVCPAEKISCGDLSNKCIPSSWRCDGQKDCES 138

>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B|
            precursor (Low-density lipoprotein receptor-related
            protein-deleted in tumor) (LRP-DIT)
          Length = 4599

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -3

Query: 543  CDFHGNCWKEMG--GCYVSQCRVFRTGC*AGLLVP**GSP*EVGQWLPDNSSCCDLGSDC 370
            CD   +C       GC V  C   +  C +G  +P        G W  D  + C   SD 
Sbjct: 987  CDTDDDCGDRSDEVGC-VHSCLDDQFRCSSGRCIP--------GHWACDGDNDCGDFSDE 1037

Query: 369  TDLKCTKKEA 340
            T + CTK+EA
Sbjct: 1038 THINCTKEEA 1047

>DPOL1_SULAC (P95690) DNA polymerase 1 (EC 2.7.7.7) (DNA polymerase I)|
          Length = 876

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -1

Query: 557 RDNFYVTSMATAGKKW--AVVMSRNAGFSEQVVELDF--LYPSEGVHKRWDSGY 408
           R N   T+    GKK+  AVV+   AG    VV LDF  LYPS  + K W+  Y
Sbjct: 477 RSNQVKTAAVIKGKKYKGAVVIDPPAGVYFNVVVLDFASLYPS--IIKNWNISY 528

>PBPB_BUCBP (Q89AR2) Penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein|
           polymerase) [Includes: Penicillin-insensitive
           transglycosylase (EC 2.4.1.129) (Peptidoglycan
           glycosyltransferase) (Peptidoglycan TGase);
           Penicillin-sensitive transpeptidase (EC 3.
          Length = 741

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 19  VYYTAVKSTQKI*HDYKHLLLYTLFSIINSDKQKHLHKNTLGGHMAKLT 165
           +Y++  +S Q I     +L LY + S+++S   KHL K     H+A  T
Sbjct: 593 IYHSFPQSKQVISAQASYLTLYAMQSVVSSGTAKHLGKFFKNMHLAGKT 641


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,536,247
Number of Sequences: 219361
Number of extensions: 1854738
Number of successful extensions: 4750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4749
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)