ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7g04 |
|---|---|
| Clone Library Name | barley_pub |
>VPS36_BRARE (Q7ZVK4) Vacuolar protein sorting protein 36| Length = 382 Score = 132 bits (331), Expect = 1e-30 Identities = 72/140 (51%), Positives = 96/140 (68%), Gaps = 1/140 (0%) Frame = -1 Query: 626 KLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPEDLLQACSLWEKFDVPVMLRKFD 447 +L D ++ P+E GGMMAL +VYCL NRARG EL+SPEDL+ AC ++E +P+ LR FD Sbjct: 248 QLGDMLQAPLEERGGMMALTEVYCLVNRARGMELLSPEDLVNACKIFESLKLPLRLRVFD 307 Query: 446 SGVKVIQTKTHSDDEVFARISSLAQKPDALLKG-ISPSDAAFTLGIAPALAKEHLLNAEN 270 SGV V+Q ++HS++E+ A S+L D KG ++ + A LG++ LAKE LL AE Sbjct: 308 SGVMVVQLQSHSEEEMIA--SALDNVSD---KGSLTAEEFAKLLGLSVLLAKERLLLAEK 362 Query: 269 KGLLCRDVSPDGFRFYINLF 210 G LCRD S +G RFY NLF Sbjct: 363 MGHLCRDDSVEGLRFYPNLF 382
>VPS36_XENLA (Q6DDF4) Vacuolar protein sorting protein 36| Length = 388 Score = 125 bits (315), Expect = 9e-29 Identities = 65/139 (46%), Positives = 92/139 (66%) Frame = -1 Query: 626 KLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPEDLLQACSLWEKFDVPVMLRKFD 447 +LA ++ P+E GG+M+L +VYCL NRARG EL+SPEDL+ AC + E +P+ LR FD Sbjct: 250 QLATMLQAPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLESLKLPIRLRVFD 309 Query: 446 SGVKVIQTKTHSDDEVFARISSLAQKPDALLKGISPSDAAFTLGIAPALAKEHLLNAENK 267 SGV VI+ ++H+++E+ A + +L + + A +G++ LAKE LL AEN Sbjct: 310 SGVMVIEHQSHNEEEMVASALETVSEKGSL----TSEEFAKIVGMSVLLAKERLLLAENM 365 Query: 266 GLLCRDVSPDGFRFYINLF 210 G LCRD S +G RFY NLF Sbjct: 366 GHLCRDDSVEGLRFYPNLF 384
>VPS36_RAT (P0C0A2) Vacuolar protein sorting protein 36 (ELL-associated| protein of 45 kDa) Length = 386 Score = 124 bits (311), Expect = 3e-28 Identities = 66/139 (47%), Positives = 90/139 (64%) Frame = -1 Query: 626 KLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPEDLLQACSLWEKFDVPVMLRKFD 447 +LA ++ P+E GG+M+L +VYCL NRARG EL+SPEDL+ AC + E +PV LR FD Sbjct: 248 QLAGILQAPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEGLKLPVRLRVFD 307 Query: 446 SGVKVIQTKTHSDDEVFARISSLAQKPDALLKGISPSDAAFTLGIAPALAKEHLLNAENK 267 SGV VI+ +TH ++E+ A + +L + + A +G++ LAKE LL AE Sbjct: 308 SGVMVIELQTHKEEEMVASALETVSERGSL----TSEEFAKLVGMSVLLAKERLLLAEKM 363 Query: 266 GLLCRDVSPDGFRFYINLF 210 G LCRD S +G RFY NLF Sbjct: 364 GHLCRDDSVEGLRFYPNLF 382
>VPS36_MOUSE (Q91XD6) Vacuolar protein sorting protein 36| Length = 386 Score = 124 bits (311), Expect = 3e-28 Identities = 65/139 (46%), Positives = 90/139 (64%) Frame = -1 Query: 626 KLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPEDLLQACSLWEKFDVPVMLRKFD 447 +LA ++ P+E GG+M+L +VYCL NRARG EL+SPEDL+ AC + E +P+ LR FD Sbjct: 248 QLAGILQAPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPIRLRVFD 307 Query: 446 SGVKVIQTKTHSDDEVFARISSLAQKPDALLKGISPSDAAFTLGIAPALAKEHLLNAENK 267 SGV VI+ +TH ++E+ A + +L + + A +G++ LAKE LL AE Sbjct: 308 SGVMVIELQTHKEEEMVASALETVSERGSL----TSEEFAKLVGMSVLLAKERLLLAEKM 363 Query: 266 GLLCRDVSPDGFRFYINLF 210 G LCRD S +G RFY NLF Sbjct: 364 GHLCRDDSVEGLRFYPNLF 382
>VPS36_HUMAN (Q86VN1) Vacuolar protein sorting protein 36 (ELL-associated| protein of 45 kDa) Length = 386 Score = 124 bits (310), Expect = 3e-28 Identities = 64/139 (46%), Positives = 91/139 (65%) Frame = -1 Query: 626 KLADFVRIPVERAGGMMALVDVYCLFNRARGTELISPEDLLQACSLWEKFDVPVMLRKFD 447 +LA +++P+E GG+M+L +VYCL NRARG EL+SPEDL+ AC + E +P+ LR FD Sbjct: 248 QLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFD 307 Query: 446 SGVKVIQTKTHSDDEVFARISSLAQKPDALLKGISPSDAAFTLGIAPALAKEHLLNAENK 267 SGV VI+ ++H ++E+ A + +L + + A +G++ LAKE LL AE Sbjct: 308 SGVMVIELQSHKEEEMVASALETVSEKGSL----TSEEFAKLVGMSVLLAKERLLLAEKM 363 Query: 266 GLLCRDVSPDGFRFYINLF 210 G LCRD S +G RFY NLF Sbjct: 364 GHLCRDDSVEGLRFYPNLF 382
>VPS36_YEAST (Q06696) Vacuolar protein sorting protein 36| Length = 566 Score = 33.5 bits (75), Expect = 0.61 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Frame = -1 Query: 581 MMALVDVYCLFNRAR--GTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSD 408 ++ LVD+Y ++N++ GT LISP ++ +AC +E + L+ +++ + Sbjct: 434 IITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLN-ELKLVKVNKRILCVTSEKF 492 Query: 407 DEVFARISSL-AQKPDALLKGISP------SDAAFTLGIAPALAKEHLLNAENKGLLCRD 249 D V ++ L P + L ++ S + +TLGI E L N ++G L D Sbjct: 493 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGI----LMEVLQNCVDEGDLLID 548 Query: 248 VSPDGFRFYINLF 210 G +Y N + Sbjct: 549 KQLSGIYYYKNSY 561
>DYF8_CAEEL (Q09276) Protein dyf-8 (Abnormal dye filling protein 8)| Length = 446 Score = 30.0 bits (66), Expect = 6.7 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Frame = -1 Query: 587 GGMMALVDVYCLFNR----ARGTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQTK 420 G L V+CL+ R R +++ + +++ + K V ++ R DSG + + Sbjct: 127 GKTTRLNHVFCLYTRNVKTIRFSDVSNGHEVIASTGGKPKPKVEMLFRSTDSGKTLQAAR 186 Query: 419 THSDDEVFARISSLAQKPDALLKGISPSDAAFT 321 + E F +S PD+ GISP + F+ Sbjct: 187 ENEFVEFFIALS-----PDSAYHGISPKECTFS 214
>HIS6_PROM9 (Q31CA5) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 256 Score = 30.0 bits (66), Expect = 6.7 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 Query: 629 DKLADFVRIPVERAGGMMALVDVYCLFNRARGT 531 + +A+ V IPV +GG L D+Y +FN R + Sbjct: 191 ESVANIVNIPVIASGGAGCLEDIYDVFNEGRAS 223
>SYNC_CAEEL (Q19722) Asparaginyl-tRNA synthetase, cytoplasmic (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 545 Score = 30.0 bits (66), Expect = 6.7 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = -1 Query: 614 FVRIPVERAGGMMALVDVYCLFNRARGTELISPEDLLQACS--LWEKFDVPVMLRKFDSG 441 F R+P + A + DV G + + ED+ +A + + VP++L +F G Sbjct: 385 FKRMPYKEAIEWLQKNDV----RNEMGEKFVYGEDIAEAAERRMTDTIGVPILLNRFPHG 440 Query: 440 VKVIQTKTHSDDEVFARISSLAQKPDALLKGI 345 +K +DD + L + D L+ G+ Sbjct: 441 IKAFYMPRCADD------NELTESVDLLMPGV 466
>PURA_GLUOX (Q5FQZ9) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 30.0 bits (66), Expect = 6.7 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Frame = -1 Query: 524 ISPEDLLQACSLWEKFDVPVML--RKFDSGVKVIQTKTHSDDEVFARISSLAQKPDALLK 351 I+P L +C +W++ D R G + + F S+ A Sbjct: 192 ITPRLLPFSCQVWDRLDEARRAGRRILFEGAQAVMLDVDHGTYPFVTSSNTVAAVAASGS 251 Query: 350 GISPSDAAFTLGIAPA 303 G+SPS F LGIA A Sbjct: 252 GVSPSSVGFVLGIAKA 267
>PGMP_BRANA (Q9SMM0) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)| (Glucose phosphomutase) (PGM) Length = 629 Score = 29.6 bits (65), Expect = 8.8 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = +1 Query: 403 SSSLCVLVWITFTPLSNFRSITGTSNFSQREQACKRSSGEINSVPLARLKRQ*TSTSAI 579 SS L + + P S RS+TG S+ S S EI S+P ++ Q T TS + Sbjct: 35 SSLLSSGIHLRAKPNSRLRSVTGASSSSSGPIIAGSESIEIKSLPTKPIEGQKTGTSGL 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,016,846 Number of Sequences: 219361 Number of extensions: 2204828 Number of successful extensions: 5740 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5564 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5732 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
