Clone Information

BLAST Search Result

Clone Name	rbags7g04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK073388.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	559	e-156
2	dbj\|AP003570.3\| Oryza sativa (japonica cultivar-group) genomic D...	167	6e-38
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	167	6e-38
4	dbj\|AP004331.3\| Oryza sativa (japonica cultivar-group) genomic D...	167	6e-38
5	dbj\|AP003247.4\| Oryza sativa (japonica cultivar-group) genomic D...	167	6e-38
6	ref\|NM_120574.3\| Arabidopsis thaliana transporter AT5G04920 mRNA...	92	3e-15
7	gb\|AY096570.1\| Arabidopsis thaliana unknown protein (At5g04920) ...	92	3e-15
8	gb\|AY072089.1\| Arabidopsis thaliana unknown protein (At5g04920) ...	92	3e-15
9	dbj\|AB005245.2\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	52	0.002
10	gb\|AC104826.5\| Homo sapiens BAC clone RP11-775M3 from 4, complet...	44	0.59
11	gb\|AC097499.3\| Homo sapiens BAC clone RP11-333J2 from 2, complet...	44	0.59
12	gb\|AF285443.4\| Homo sapiens chromosome 8 clone SCb-449o20 map p2...	42	2.3
13	gb\|AF252830.5\| Homo sapiens chromosome 8 clone SCb-295j18 map p2...	42	2.3
14	gb\|AC131269.3\| Homo sapiens chromosome 8, clone RP11-416I21, com...	42	2.3
15	gb\|AC130360.4\| Homo sapiens chromosome 8, clone RP11-287P18, com...	42	2.3
16	gb\|AC006458.2\| Homo sapiens BAC clone GS1-228E12 from 7, complet...	42	2.3
17	gb\|AF252831.2\| Homo sapiens chromosome 8 clone SCb-177k12 map 8p...	42	2.3
18	emb\|BX511202.3\|RN217N9 Rattus norvegicus chromosome 1 BAC RP32-2...	42	2.3
19	gb\|AC130339.12\| Homo sapiens chromosome 8, clone RP13-941O14, co...	42	2.3
20	gb\|AC011742.3\| Homo sapiens BAC clone RP11-214J9 from 2, complet...	42	2.3
21	gb\|AC130367.12\| Homo sapiens chromosome 8, clone RP11-1322A13, c...	42	2.3
22	gb\|AC134683.9\| Homo sapiens chromosome 8, clone RP11-1175L4, com...	42	2.3
23	gb\|AC134395.7\| Homo sapiens chromosome 8, clone RP11-739E3, comp...	42	2.3
24	emb\|AL772231.8\| Mouse DNA sequence from clone RP23-398O7 on chro...	42	2.3
25	gb\|AC130365.5\| Homo sapiens chromosome 8, clone RP11-1195F20, co...	42	2.3
26	emb\|CR932998.12\| Zebrafish DNA sequence from clone DKEY-111I23 i...	40	9.3
27	gb\|AC124293.6\| Homo sapiens chromosome 8, clone RP11-86O15, comp...	40	9.3
28	gb\|AC102792.7\| Mus musculus chromosome 7, clone RP23-370I17, com...	40	9.3
29	gb\|AC107505.6\| Rattus norvegicus 18 BAC CH230-129O15 (Children's...	40	9.3
30	gb\|AC120367.8\| Mus musculus chromosome 7, clone RP24-325B21, com...	40	9.3
31	dbj\|AK126754.1\| Homo sapiens cDNA FLJ44801 fis, clone BRACE3041827	40	9.3
32	gb\|AC010198.8\| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Rosw...	40	9.3
33	gb\|AC111220.6\| Rattus norvegicus Chr BAC CH230-122K11 (Children'...	40	9.3
34	gb\|AC159327.8\| Mus musculus 10 BAC RP23-207L3 (Roswell Park Canc...	40	9.3
35	gb\|AE016817.2\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	9.3
36	gb\|AC134864.5\| Mus musculus BAC clone RP24-132O18 from chromosom...	40	9.3
37	gb\|AC011003.7\|AC011003 Homo sapiens chromosome 8 clone RP11-86O1...	40	9.3
38	gb\|AC090806.12\| Homo sapiens chromosome 8, clone RP11-94A24, com...	40	9.3
39	gb\|AC108136.14\| Homo sapiens chromosome 8, clone RP11-96B2, comp...	40	9.3
40	ref\|NM_209662.1\| Eremothecium gossypii ADR213Cp (ADR213C), mRNA	40	9.3
41	gb\|AC152983.2\| Mus musculus 10 BAC RP23-17L11 (Roswell Park Canc...	40	9.3
42	dbj\|AP003786.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.3

>dbj|AK073388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043F13, full
            insert sequence
          Length = 1744

 Score =  559 bits (282), Expect = e-156
 Identities = 472/534 (88%), Gaps = 1/534 (0%)
 Strand = Plus / Minus

                                                                        
Query: 142  acagagatccaagtgtggtatagtccatgggtttttggcgaataaatattctggggatca 201
            ||||| ||||| |||||||||| |||||| |||||||||  ||| ||||| |||||||||
Sbjct: 1354 acagatatccatgtgtggtatactccatgagtttttggcatatacatattttggggatca 1295

                                                                        
Query: 202  atctcgttaaacaaattgatgtagaagcggaatccatctgggctgacatccctgcagagg 261
            || || ||||| | ||||||||||||||| || |||||||| |||||||||||||| |||
Sbjct: 1294 atttcattaaatagattgatgtagaagcgcaacccatctggactgacatccctgcaaagg 1235

                                                                        
Query: 262  agacctttgttttctgcatttagaagatgctcctttgctaaagctggtgcaatccccagt 321
            | |||  || ||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct: 1234 ataccaatgctttctgcatttagaagatgctccttcgctaaagcaggtgcaatcccaagt 1175

                                                                        
Query: 322  gtaaatgcagcgtcgctggggcttattcctttcagaagagcatccggcttttgcgcgagt 381
            ||||||||||| ||||||||||||||||| ||| |||| ||||||  |||||| || |||
Sbjct: 1174 gtaaatgcagcatcgctggggcttattcccttctgaagggcatcctccttttgtgcaagt 1115

                                                                        
Query: 382  gatgagattcttgcaaatacctcatcatcactatgcgtcttggtctggatcaccttcact 441
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 gatgagattctcgcaaatacctcatcatcactatgcgtcttggtctggatcaccttcact 1055

                                                                        
Query: 442  ccactatcaaatttccggagcattactgggacatcaaatttctcccaaagggagcaagct 501
            ||||| |||||||||| |||||| |||||||| |||||||||||||||||||| || |||
Sbjct: 1054 ccactgtcaaatttcctgagcatgactgggacgtcaaatttctcccaaagggaacaggct 995

                                                                        
Query: 502  tgcaaaagatcctctggtgagatcaactctgttcccctagcgcggttgaagagacagtag 561
            |||| ||||||||||||||||||||||||||| || || || |||||| ||||||| |||
Sbjct: 994  tgcagaagatcctctggtgagatcaactctgtccctcttgcacggttgtagagacaatag 935

                                                                        
Query: 562  acatcgactagtgccatcataccacctgctctctcaactggtattctcacaaagtcagcc 621
            ||||| |||||||||||||||||||||||| |||| | |||| |||| | | ||||||||
Sbjct: 934  acatcaactagtgccatcataccacctgctttctctagtggtgttctaatatagtcagcc 875

                                                                  
Query: 622  agcttgtcgtgaaagctgctgatggtacaaagcaccagcagtttcctttgtcac 675
            | | || ||||| |||||||| ||||||| ||||||||| ||||| || |||||
Sbjct: 874  aac-tggcgtgacagctgctggtggtacagagcaccagcggtttctttcgtcac 822

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>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0432B10
          Length = 131918

 Score =  167 bits (84), Expect = 6e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                         
Query: 272   tttctgcatttagaagatgctcctttgctaaagctggtgcaatccccagtgtaaatgcag 331
             ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 75244 tttctgcatttagaagatgctccttcgctaaagcaggtgcaatcccaagtgtaaatgcag 75303

                                                                         
Query: 332   cgtcgctggggcttattcctttcagaagagcatccggcttttgcgcgagtgatgagattc 391
             | ||||||||||||||||| ||| |||| ||||||  |||||| || |||||||||||||
Sbjct: 75304 catcgctggggcttattcccttctgaagggcatcctccttttgtgcaagtgatgagattc 75363

                         
Query: 392   ttgcaaatacct 403
             | ||||||||||
Sbjct: 75364 tcgcaaatacct 75375



 Score =  121 bits (61), Expect = 3e-24
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                         
Query: 399   tacctcatcatcactatgcgtcttggtctggatcaccttcactccactatcaaatttccg 458
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 75628 tacctcatcatcactatgcgtcttggtctggatcaccttcactccactgtcaaatttcct 75687

                          
Query: 459   gagcattactggg 471
             |||||| ||||||
Sbjct: 75688 gagcatgactggg 75700



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                      
Query: 475   tcaaatttctcccaaagggagcaagcttgcaaaagatcctctggtgagatcaactct 531
             |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct: 75813 tcaaatttctcccaaagggaacaggcttgcagaagatcctctggtgagatcaactct 75869



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                         
Query: 187   atattctggggatcaatctcgttaaacaaattgatgtagaagcggaatccatctgggctg 246
             ||||| ||||||||||| || ||||| | ||||||||||||||| || |||||||| |||
Sbjct: 75074 atattttggggatcaatttcattaaatagattgatgtagaagcgcaacccatctggactg 75133

                                  
Query: 247   acatccctgcagaggagacct 267
             ||||||||||| |||| ||||
Sbjct: 75134 acatccctgcaaaggatacct 75154



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                         
Query: 544   cggttgaagagacagtagacatcgactagtgccatcataccacctgctctctcaactggt 603
             |||||| ||||||| |||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct: 75966 cggttgtagagacaatagacatcaactagtgccatcataccacctgctttctctagtggt 76025

                                
Query: 604   attctcacaaagtcagcca 622
              |||| | | |||||||||
Sbjct: 76026 gttctaatatagtcagcca 76044

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  167 bits (84), Expect = 6e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                            
Query: 272      tttctgcatttagaagatgctcctttgctaaagctggtgcaatccccagtgtaaatgcag 331
                ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 34577950 tttctgcatttagaagatgctccttcgctaaagcaggtgcaatcccaagtgtaaatgcag 34578009

                                                                            
Query: 332      cgtcgctggggcttattcctttcagaagagcatccggcttttgcgcgagtgatgagattc 391
                | ||||||||||||||||| ||| |||| ||||||  |||||| || |||||||||||||
Sbjct: 34578010 catcgctggggcttattcccttctgaagggcatcctccttttgtgcaagtgatgagattc 34578069

                            
Query: 392      ttgcaaatacct 403
                | ||||||||||
Sbjct: 34578070 tcgcaaatacct 34578081



 Score =  121 bits (61), Expect = 3e-24
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                            
Query: 399      tacctcatcatcactatgcgtcttggtctggatcaccttcactccactatcaaatttccg 458
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 34578334 tacctcatcatcactatgcgtcttggtctggatcaccttcactccactgtcaaatttcct 34578393

                             
Query: 459      gagcattactggg 471
                |||||| ||||||
Sbjct: 34578394 gagcatgactggg 34578406



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                         
Query: 475      tcaaatttctcccaaagggagcaagcttgcaaaagatcctctggtgagatcaactct 531
                |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct: 34578519 tcaaatttctcccaaagggaacaggcttgcagaagatcctctggtgagatcaactct 34578575



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                            
Query: 187      atattctggggatcaatctcgttaaacaaattgatgtagaagcggaatccatctgggctg 246
                ||||| ||||||||||| || ||||| | ||||||||||||||| || |||||||| |||
Sbjct: 34577780 atattttggggatcaatttcattaaatagattgatgtagaagcgcaacccatctggactg 34577839

                                     
Query: 247      acatccctgcagaggagacct 267
                ||||||||||| |||| ||||
Sbjct: 34577840 acatccctgcaaaggatacct 34577860



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                            
Query: 544      cggttgaagagacagtagacatcgactagtgccatcataccacctgctctctcaactggt 603
                |||||| ||||||| |||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct: 34578672 cggttgtagagacaatagacatcaactagtgccatcataccacctgctttctctagtggt 34578731

                                   
Query: 604      attctcacaaagtcagcca 622
                 |||| | | |||||||||
Sbjct: 34578732 gttctaatatagtcagcca 34578750

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>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0085D07
          Length = 172483

 Score =  167 bits (84), Expect = 6e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                         
Query: 272   tttctgcatttagaagatgctcctttgctaaagctggtgcaatccccagtgtaaatgcag 331
             ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 29967 tttctgcatttagaagatgctccttcgctaaagcaggtgcaatcccaagtgtaaatgcag 30026

                                                                         
Query: 332   cgtcgctggggcttattcctttcagaagagcatccggcttttgcgcgagtgatgagattc 391
             | ||||||||||||||||| ||| |||| ||||||  |||||| || |||||||||||||
Sbjct: 30027 catcgctggggcttattcccttctgaagggcatcctccttttgtgcaagtgatgagattc 30086

                         
Query: 392   ttgcaaatacct 403
             | ||||||||||
Sbjct: 30087 tcgcaaatacct 30098



 Score =  121 bits (61), Expect = 3e-24
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                         
Query: 399   tacctcatcatcactatgcgtcttggtctggatcaccttcactccactatcaaatttccg 458
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 30351 tacctcatcatcactatgcgtcttggtctggatcaccttcactccactgtcaaatttcct 30410

                          
Query: 459   gagcattactggg 471
             |||||| ||||||
Sbjct: 30411 gagcatgactggg 30423



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                      
Query: 475   tcaaatttctcccaaagggagcaagcttgcaaaagatcctctggtgagatcaactct 531
             |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct: 30536 tcaaatttctcccaaagggaacaggcttgcagaagatcctctggtgagatcaactct 30592



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                         
Query: 187   atattctggggatcaatctcgttaaacaaattgatgtagaagcggaatccatctgggctg 246
             ||||| ||||||||||| || ||||| | ||||||||||||||| || |||||||| |||
Sbjct: 29797 atattttggggatcaatttcattaaatagattgatgtagaagcgcaacccatctggactg 29856

                                  
Query: 247   acatccctgcagaggagacct 267
             ||||||||||| |||| ||||
Sbjct: 29857 acatccctgcaaaggatacct 29877



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                         
Query: 544   cggttgaagagacagtagacatcgactagtgccatcataccacctgctctctcaactggt 603
             |||||| ||||||| |||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct: 30689 cggttgtagagacaatagacatcaactagtgccatcataccacctgctttctctagtggt 30748

                                
Query: 604   attctcacaaagtcagcca 622
              |||| | | |||||||||
Sbjct: 30749 gttctaatatagtcagcca 30767

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>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0425G02
          Length = 155432

 Score =  167 bits (84), Expect = 6e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                          
Query: 272    tttctgcatttagaagatgctcctttgctaaagctggtgcaatccccagtgtaaatgcag 331
              ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 153669 tttctgcatttagaagatgctccttcgctaaagcaggtgcaatcccaagtgtaaatgcag 153728

                                                                          
Query: 332    cgtcgctggggcttattcctttcagaagagcatccggcttttgcgcgagtgatgagattc 391
              | ||||||||||||||||| ||| |||| ||||||  |||||| || |||||||||||||
Sbjct: 153729 catcgctggggcttattcccttctgaagggcatcctccttttgtgcaagtgatgagattc 153788

                          
Query: 392    ttgcaaatacct 403
              | ||||||||||
Sbjct: 153789 tcgcaaatacct 153800



 Score =  121 bits (61), Expect = 3e-24
 Identities = 70/73 (95%)
 Strand = Plus / Plus

                                                                          
Query: 399    tacctcatcatcactatgcgtcttggtctggatcaccttcactccactatcaaatttccg 458
              |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 154053 tacctcatcatcactatgcgtcttggtctggatcaccttcactccactgtcaaatttcct 154112

                           
Query: 459    gagcattactggg 471
              |||||| ||||||
Sbjct: 154113 gagcatgactggg 154125



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                       
Query: 475    tcaaatttctcccaaagggagcaagcttgcaaaagatcctctggtgagatcaactct 531
              |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct: 154238 tcaaatttctcccaaagggaacaggcttgcagaagatcctctggtgagatcaactct 154294



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                          
Query: 187    atattctggggatcaatctcgttaaacaaattgatgtagaagcggaatccatctgggctg 246
              ||||| ||||||||||| || ||||| | ||||||||||||||| || |||||||| |||
Sbjct: 153499 atattttggggatcaatttcattaaatagattgatgtagaagcgcaacccatctggactg 153558

                                   
Query: 247    acatccctgcagaggagacct 267
              ||||||||||| |||| ||||
Sbjct: 153559 acatccctgcaaaggatacct 153579



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                          
Query: 544    cggttgaagagacagtagacatcgactagtgccatcataccacctgctctctcaactggt 603
              |||||| ||||||| |||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct: 154391 cggttgtagagacaatagacatcaactagtgccatcataccacctgctttctctagtggt 154450

                                 
Query: 604    attctcacaaagtcagcca 622
               |||| | | |||||||||
Sbjct: 154451 gttctaatatagtcagcca 154469

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>ref|NM_120574.3| Arabidopsis thaliana transporter AT5G04920 mRNA, complete cds
          Length = 1818

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 106/126 (84%)
 Strand = Plus / Minus

                                                                        
Query: 427  tggatcaccttcactccactatcaaatttccggagcattactgggacatcaaatttctcc 486
            ||||| ||| |||| || |||||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 1348 tggatgaccatcacaccgctatcaaacttccgcagcattactggaacatcaaatttctcc 1289

                                                                        
Query: 487  caaagggagcaagcttgcaaaagatcctctggtgagatcaactctgttcccctagcgcgg 546
            || ||||  ||||||||| | | ||| ||||| || ||||||||||| || | ||| |||
Sbjct: 1288 cagagggtacaagcttgccacaaatcgtctggggaaatcaactctgtcccacgagctcgg 1229

                  
Query: 547  ttgaag 552
            ||||||
Sbjct: 1228 ttgaag 1223

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>gb|AY096570.1| Arabidopsis thaliana unknown protein (At5g04920) mRNA, complete cds
          Length = 1353

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 106/126 (84%)
 Strand = Plus / Minus

                                                                        
Query: 427  tggatcaccttcactccactatcaaatttccggagcattactgggacatcaaatttctcc 486
            ||||| ||| |||| || |||||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 1016 tggatgaccatcacaccgctatcaaacttccgcagcattactggaacatcaaatttctcc 957

                                                                        
Query: 487  caaagggagcaagcttgcaaaagatcctctggtgagatcaactctgttcccctagcgcgg 546
            || ||||  ||||||||| | | ||| ||||| || ||||||||||| || | ||| |||
Sbjct: 956  cagagggtacaagcttgccacaaatcgtctggggaaatcaactctgtcccacgagctcgg 897

                  
Query: 547  ttgaag 552
            ||||||
Sbjct: 896  ttgaag 891

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>gb|AY072089.1| Arabidopsis thaliana unknown protein (At5g04920) mRNA, complete cds
          Length = 1833

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 106/126 (84%)
 Strand = Plus / Minus

                                                                        
Query: 427  tggatcaccttcactccactatcaaatttccggagcattactgggacatcaaatttctcc 486
            ||||| ||| |||| || |||||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 1348 tggatgaccatcacaccgctatcaaacttccgcagcattactggaacatcaaatttctcc 1289

                                                                        
Query: 487  caaagggagcaagcttgcaaaagatcctctggtgagatcaactctgttcccctagcgcgg 546
            || ||||  ||||||||| | | ||| ||||| || ||||||||||| || | ||| |||
Sbjct: 1288 cagagggtacaagcttgccacaaatcgtctggggaaatcaactctgtcccacgagctcgg 1229

                  
Query: 547  ttgaag 552
            ||||||
Sbjct: 1228 ttgaag 1223

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>dbj|AB005245.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13
          Length = 86630

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                        
Query: 472  acatcaaatttctcccaaagggagcaagcttgcaaaagatcctctggtgagatcaactct 531
            ||||||||||||||||| ||||  ||||||||| | | ||| ||||| || |||||||||
Sbjct: 7137 acatcaaatttctcccagagggtacaagcttgccacaaatcgtctggggaaatcaactct 7196

              
Query: 532  gt 533
            ||
Sbjct: 7197 gt 7198



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                        
Query: 427  tggatcaccttcactccactatcaaatttccggagcattactgg 470
            ||||| ||| |||| || |||||||| ||||| |||||||||||
Sbjct: 6993 tggatgaccatcacaccgctatcaaacttccgcagcattactgg 7036

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>gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complete sequence
          Length = 138604

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 587   ctgctctctcaactggtattctcaca 612
             |||||||||| |||||||||||||||
Sbjct: 93930 ctgctctctccactggtattctcaca 93905

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>gb|AC097499.3| Homo sapiens BAC clone RP11-333J2 from 2, complete sequence
          Length = 193973

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 575   ccatcataccacctgctctctc 596
             ||||||||||||||||||||||
Sbjct: 84860 ccatcataccacctgctctctc 84881

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>gb|AF285443.4| Homo sapiens chromosome 8 clone SCb-449o20 map p23.1, complete sequence
          Length = 147536

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 100    ctttttcatgaatcaaaattatgtc 124
              ||||| |||||||||||||||||||
Sbjct: 107992 cttttacatgaatcaaaattatgtc 107968

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>gb|AF252830.5| Homo sapiens chromosome 8 clone SCb-295j18 map p23.1, complete sequence
          Length = 172560

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 100    ctttttcatgaatcaaaattatgtc 124
              ||||| |||||||||||||||||||
Sbjct: 100425 cttttacatgaatcaaaattatgtc 100401

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>gb|AC131269.3| Homo sapiens chromosome 8, clone RP11-416I21, complete sequence
          Length = 190031

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 100    ctttttcatgaatcaaaattatgtc 124
              ||||| |||||||||||||||||||
Sbjct: 149890 cttttacatgaatcaaaattatgtc 149914

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>gb|AC130360.4| Homo sapiens chromosome 8, clone RP11-287P18, complete sequence
          Length = 171474

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 100   ctttttcatgaatcaaaattatgtc 124
             ||||| |||||||||||||||||||
Sbjct: 77515 cttttacatgaatcaaaattatgtc 77539

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>gb|AC006458.2| Homo sapiens BAC clone GS1-228E12 from 7, complete sequence
          Length = 121336

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 472   acatcaaatttctcccaaagg 492
             |||||||||||||||||||||
Sbjct: 48470 acatcaaatttctcccaaagg 48490

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>gb|AF252831.2| Homo sapiens chromosome 8 clone SCb-177k12 map 8p22-p21, complete
             sequence
          Length = 115137

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 100   ctttttcatgaatcaaaattatgtc 124
             ||||| |||||||||||||||||||
Sbjct: 56317 cttttacatgaatcaaaattatgtc 56341

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>emb|BX511202.3|RN217N9 Rattus norvegicus chromosome 1 BAC RP32-217N9, complete sequence
          Length = 178012

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 266   ctttgttttctgcatttagaa 286
             |||||||||||||||||||||
Sbjct: 87312 ctttgttttctgcatttagaa 87332

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>gb|AC130339.12| Homo sapiens chromosome 8, clone RP13-941O14, complete sequence
          Length = 173255

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 100    ctttttcatgaatcaaaattatgtc 124
              ||||| |||||||||||||||||||
Sbjct: 100656 cttttacatgaatcaaaattatgtc 100680

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>gb|AC011742.3| Homo sapiens BAC clone RP11-214J9 from 2, complete sequence
          Length = 181210

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 275    ctgcatttagaagatgctcct 295
              |||||||||||||||||||||
Sbjct: 155186 ctgcatttagaagatgctcct 155166

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>gb|AC130367.12| Homo sapiens chromosome 8, clone RP11-1322A13, complete sequence
          Length = 188884

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 100    ctttttcatgaatcaaaattatgtc 124
              ||||| |||||||||||||||||||
Sbjct: 128600 cttttacatgaatcaaaattatgtc 128576

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>gb|AC134683.9| Homo sapiens chromosome 8, clone RP11-1175L4, complete sequence
          Length = 172084

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 100    ctttttcatgaatcaaaattatgtc 124
              ||||| |||||||||||||||||||
Sbjct: 108499 cttttacatgaatcaaaattatgtc 108475

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>gb|AC134395.7| Homo sapiens chromosome 8, clone RP11-739E3, complete sequence
          Length = 178401

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 100    ctttttcatgaatcaaaattatgtc 124
              ||||| |||||||||||||||||||
Sbjct: 105344 cttttacatgaatcaaaattatgtc 105320

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>emb|AL772231.8| Mouse DNA sequence from clone RP23-398O7 on chromosome 4, complete
              sequence
          Length = 153653

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 473    catcaaatttctcccaaaggg 493
              |||||||||||||||||||||
Sbjct: 117255 catcaaatttctcccaaaggg 117235

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>gb|AC130365.5| Homo sapiens chromosome 8, clone RP11-1195F20, complete sequence
          Length = 171639

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 100   ctttttcatgaatcaaaattatgtc 124
             ||||| |||||||||||||||||||
Sbjct: 81591 cttttacatgaatcaaaattatgtc 81615

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>emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 in linkage group 9,
             complete sequence
          Length = 218171

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    catcaaagttcagtcagctg 92
             ||||||||||||||||||||
Sbjct: 72090 catcaaagttcagtcagctg 72071

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>gb|AC124293.6| Homo sapiens chromosome 8, clone RP11-86O15, complete sequence
          Length = 111669

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    cactttttcatgaatcaaaa 117
             ||||||||||||||||||||
Sbjct: 31165 cactttttcatgaatcaaaa 31184

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>gb|AC102792.7| Mus musculus chromosome 7, clone RP23-370I17, complete sequence
          Length = 215999

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    ctttgttttctgcatttaga 285
              ||||||||||||||||||||
Sbjct: 117930 ctttgttttctgcatttaga 117911

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>gb|AC107505.6| Rattus norvegicus 18 BAC CH230-129O15 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 219880

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   cctttgttttctgcatttag 284
             ||||||||||||||||||||
Sbjct: 56735 cctttgttttctgcatttag 56716

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>gb|AC120367.8| Mus musculus chromosome 7, clone RP24-325B21, complete sequence
          Length = 224814

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    ctttgttttctgcatttaga 285
              ||||||||||||||||||||
Sbjct: 174524 ctttgttttctgcatttaga 174505

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>dbj|AK126754.1| Homo sapiens cDNA FLJ44801 fis, clone BRACE3041827
          Length = 3864

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   ctccactttttcatgaatca 114
            ||||||||||||||||||||
Sbjct: 1940 ctccactttttcatgaatca 1959

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>gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 199070

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ctccactttttcatgaatca 114
             ||||||||||||||||||||
Sbjct: 76077 ctccactttttcatgaatca 76058

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>gb|AC111220.6| Rattus norvegicus Chr BAC CH230-122K11 (Children's Hospital Oakland
            Research Institute Rat (BN/SsNHsd/MCW) BAC library)
            complete sequence
          Length = 237466

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  cctttgttttctgcatttag 284
            ||||||||||||||||||||
Sbjct: 3630 cctttgttttctgcatttag 3649

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>gb|AC159327.8| Mus musculus 10 BAC RP23-207L3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215004

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     caaaaagtcacatcaaagtt 82
              ||||||||||||||||||||
Sbjct: 190836 caaaaagtcacatcaaagtt 190817

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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
               complete sequence
          Length = 1466886

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     aagcttgcaaaagatcctct 516
               ||||||||||||||||||||
Sbjct: 1077763 aagcttgcaaaagatcctct 1077744

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>gb|AC134864.5| Mus musculus BAC clone RP24-132O18 from chromosome 15, complete
             sequence
          Length = 149797

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   cctctggtgagatcaactct 531
             ||||||||||||||||||||
Sbjct: 72760 cctctggtgagatcaactct 72741

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>gb|AC011003.7|AC011003 Homo sapiens chromosome 8 clone RP11-86O15, complete sequence
          Length = 189042

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     cactttttcatgaatcaaaa 117
              ||||||||||||||||||||
Sbjct: 157878 cactttttcatgaatcaaaa 157859

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>gb|AC090806.12| Homo sapiens chromosome 8, clone RP11-94A24, complete sequence
          Length = 131196

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 476  caaatttctcccaaagggag 495
            ||||||||||||||||||||
Sbjct: 8645 caaatttctcccaaagggag 8626

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>gb|AC108136.14| Homo sapiens chromosome 8, clone RP11-96B2, complete sequence
          Length = 172124

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    caaatttctcccaaagggag 495
              ||||||||||||||||||||
Sbjct: 167980 caaatttctcccaaagggag 167961

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>ref|NM_209662.1| Eremothecium gossypii ADR213Cp (ADR213C), mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 497 aagcttgcaaaagatcctct 516
           ||||||||||||||||||||
Sbjct: 927 aagcttgcaaaagatcctct 946

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>gb|AC152983.2| Mus musculus 10 BAC RP23-17L11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224120

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 397    aatacctcatcatcactatgcgtcttgg 424
              |||| ||||||||||||||| |||||||
Sbjct: 101288 aatatctcatcatcactatgggtcttgg 101261

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>dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1018C4, complete
              sequence
          Length = 174667

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    caaatttctcccaaagggag 495
              ||||||||||||||||||||
Sbjct: 164599 caaatttctcccaaagggag 164618


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,400,591
Number of Sequences: 3902068
Number of extensions: 6400591
Number of successful extensions: 113971
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113830
Number of HSP's gapped (non-prelim): 141
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result