ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7f24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MEF2C_HUMAN (Q06413) Myocyte-specific enhancer factor 2C 30 4.9
2SYM_LACLA (Q9CHE0) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth... 30 4.9
3ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28 30 4.9
4SYM_ENTFA (Q837B3) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth... 30 6.5
5RBPMS_MOUSE (Q9WVB0) RNA-binding protein with multiple splicing ... 30 8.4

>MEF2C_HUMAN (Q06413) Myocyte-specific enhancer factor 2C|
          Length = 473

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +3

Query: 273 LRIFPCYYLLRLHPCFLLQLYQNLRVLSPYAPQLNLQATPNALPSDLSVLPSPY*FQPEQ 452
           L   P   L +L  C    L Q+  +  P    LN+++ P + P D +  PS Y      
Sbjct: 355 LHNMPPSALSQLGACTSTHLSQSSNLSLPSTQSLNIKSEPVSPPRDRTTTPSRY-----P 409

Query: 453 QHRRHQ 470
           QH RH+
Sbjct: 410 QHTRHE 415



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>SYM_LACLA (Q9CHE0) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 662

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 105 EIYKEEKNTLLEGLAPVSHE---VPQKPYLFRIWYFSLLDLQAYPF*AFC*ENHPAF 266
           EI+++E   +  G+AP  HE   V ++ Y FR+  ++   LQ Y       + HP F
Sbjct: 143 EIFRDESGNITGGIAPSGHEVEWVEEETYFFRMGKYADWLLQYY-------DEHPDF 192



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>ERG28_ARATH (O80594) Probable ergosterol biosynthetic protein 28|
          Length = 110

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +1

Query: 193 FGIFPYWTYKLILFELFVKRXXXXXXXXXXXXVIIFCVCILAF-CFSSIRI*ECFLHTLL 369
           FG F  W  +L +F     +            V     C L F C  ++     +L T L
Sbjct: 21  FGFFNIWALRLAVFS----QTTMSEVHGRTFGVWTLLTCTLCFLCAFNLENKPLYLATFL 76

Query: 370 N*IFKQPPMHFLLIYLFCQVLTSSNQS 450
           + I+     HFL  YLF Q +T +N S
Sbjct: 77  SFIYALG--HFLTEYLFYQTMTIANLS 101



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>SYM_ENTFA (Q837B3) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 669

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 105 EIYKEEKNTLLEGLAPVSHE---VPQKPYLFRIWYFSLLDLQAYPF*AFC*ENHPAF 266
           E+Y++++  ++ G AP  HE   V ++ Y FR+  ++   +Q Y       E HP F
Sbjct: 143 EVYRDDEGNVIGGKAPSGHEVELVKEESYFFRMSKYADRLVQYY-------EEHPEF 192



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>RBPMS_MOUSE (Q9WVB0) RNA-binding protein with multiple splicing (RBP-MS)|
           (HEart, RRM Expressed Sequence) (Hermes)
          Length = 197

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 246 NKKLKKDKLVGPIGKNTKSETSMVSAAPRVKLELTLPATY 127
           N K+ K+KLVG    +T    ++  +  R   ELT+PA Y
Sbjct: 102 NTKMAKNKLVGTPNPSTPLPNTVPHSVAREPYELTVPALY 141


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,002,502
Number of Sequences: 219361
Number of extensions: 1574395
Number of successful extensions: 4298
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4291
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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