ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7f16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT024077.1| Zea mays clone EL01N0513D07 mRNA sequence 125 2e-25
2dbj|AK071919.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
3dbj|AK065630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
4dbj|AK059221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
5gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
7emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BA... 44 0.51
8dbj|AP004433.1| Parazen pacificus mitochondrial DNA, complete ge... 44 0.51
9gb|BC073708.1| Xenopus laevis MGC83646 protein, mRNA (cDNA clone... 42 2.0
10gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, com... 42 2.0
11gb|AE002149.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 42 2.0
12gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, co... 42 2.0
13gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, comp... 42 2.0
14dbj|BS000655.1| Pan troglodytes chromosome Y clone:PTB-215M20, c... 42 2.0
15dbj|BS000615.1| Pan troglodytes chromosome Y clone:PTBY-009P07, ... 42 2.0
16dbj|BS000669.1| Pan troglodytes chromosome Y clone:PTB-529M03, c... 42 2.0
17dbj|BS000609.1| Pan troglodytes chromosome Y clone:PTB-217K15, c... 42 2.0
18gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 2.0
19gb|AC095063.2| Homo sapiens BAC clone RP11-533K12 from 4, comple... 42 2.0
20emb|Z82082.1|CEZC334 Caenorhabditis elegans Cosmid ZC334, comple... 42 2.0
21gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome... 40 8.0
22gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosom... 40 8.0
23gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosom... 40 8.0
24gb|AC123042.2| Mus musculus BAC clone RP24-545O17 from 10, compl... 40 8.0
25emb|AL021937.1|HS149A16 Human DNA sequence from clone RP1-149A16... 40 8.0
26emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chr... 40 8.0
27gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence 40 8.0
28gb|AC106882.5| Homo sapiens BAC clone RP11-768B22 from 4, comple... 40 8.0
29dbj|AK024235.1| Homo sapiens cDNA FLJ14173 fis, clone NT2RP2002755 40 8.0
30gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, comple... 40 8.0
31dbj|AP004237.1| Proteus vulgaris plasmid Rts1 DNA, complete sequ... 40 8.0
32gb|AC113815.6| Rattus norvegicus BAC CH230-221C20 (Children's H... 40 8.0
33gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromo... 40 8.0
34gb|AC090066.2| Homo sapiens chromosome 5 clone CTC-277N16, compl... 40 8.0
35emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in ... 40 8.0
36gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X... 40 8.0
37emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in ... 40 8.0
38gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, compl... 40 8.0
39emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 i... 40 8.0
40gb|AC006539.1|AC006539 Homo sapiens chromosome 19, BAC 39498 (CI... 40 8.0
41emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in... 40 8.0
42gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, comple... 40 8.0
43gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete... 40 8.0
44gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, compl... 40 8.0 
>gb|BT024077.1| Zea mays clone EL01N0513D07 mRNA sequence
          Length = 2174

 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Minus

                                                                        
Query: 474  gcttcttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttg 533
            |||||||| || | ||| ||||| ||||||||||||||||||||||| |||| |||||||
Sbjct: 1614 gcttcttctcgatgcaaaacaacaaggaagtcgtcttcgaattcgaacgtcaggaacttg 1555

                                                           
Query: 534  tcttgacaggtgtccactagatgagcaaggtggtggatgttctttat 580
            |||| |||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 1554 tctttacaggtgtccacaagatgagcaaggtgatggatattctttat 1508
to top
>dbj|AK071919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E14, full
            insert sequence
          Length = 2157

 Score =  115 bits (58), Expect = 2e-22
 Identities = 138/162 (85%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 419  tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 477
            ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 1712 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 1654

                                                                        
Query: 478  cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 537
            ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1653 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 1594

                                                      
Query: 538  gacaggtgtccactagatgagcaaggtggtggatgttcttta 579
              ||| |||| || || || ||||| ||||| || |||||||
Sbjct: 1593 tgcagttgtcaacaaggtgggcaagatggtgaatattcttta 1552
to top
>dbj|AK065630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I18, full
            insert sequence
          Length = 2231

 Score =  115 bits (58), Expect = 2e-22
 Identities = 138/162 (85%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 419  tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 477
            ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 1786 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 1728

                                                                        
Query: 478  cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 537
            ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1727 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 1668

                                                      
Query: 538  gacaggtgtccactagatgagcaaggtggtggatgttcttta 579
              ||| |||| || || || ||||| ||||| || |||||||
Sbjct: 1667 tgcagttgtcaacaaggtgggcaagatggtgaatattcttta 1626
to top
>dbj|AK059221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D03, full
            insert sequence
          Length = 1704

 Score =  115 bits (58), Expect = 2e-22
 Identities = 138/162 (85%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                        
Query: 419  tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 477
            ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 1190 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 1132

                                                                        
Query: 478  cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 537
            ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1131 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 1072

                                                      
Query: 538  gacaggtgtccactagatgagcaaggtggtggatgttcttta 579
              ||| |||| || || || ||||| ||||| || |||||||
Sbjct: 1071 tgcagttgtcaacaaggtgggcaagatggtgaatattcttta 1030
to top
>gb|AC148814.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0077J22,
              complete sequence
          Length = 173903

 Score =  111 bits (56), Expect = 3e-21
 Identities = 106/120 (88%), Gaps = 2/120 (1%)
 Strand = Plus / Minus

                                                                          
Query: 419    tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 477
              ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 119336 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 119278

                                                                          
Query: 478    cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 537
              ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 119277 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 119218
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  111 bits (56), Expect = 3e-21
 Identities = 106/120 (88%), Gaps = 2/120 (1%)
 Strand = Plus / Minus

                                                                           
Query: 419     tgaccttacagaggggatggcatgctctttttggatatctgacgatgcagctact-gctt 477
               ||||||||||||||| || ||||| || ||| |||||||||| ||||| | || | ||||
Sbjct: 2672816 tgaccttacagagggaattgcatgttcctttaggatatctgatgatgcgg-tagtcgctt 2672758

                                                                           
Query: 478     cttcccggtccaacacaacgaggaagtcgtcttcgaattcgaatgtcaagaacttgtctt 537
               ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2672757 cttcccgatccaaaacaactaggaagtcgtcttcgaattcgaacgtcaagaacttgtctt 2672698
to top
>emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19
          Length = 95993

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 363   tcgccttggttttggacctcatggtt 388
             |||||| |||||||||||||||||||
Sbjct: 74297 tcgcctaggttttggacctcatggtt 74272
to top
>dbj|AP004433.1| Parazen pacificus mitochondrial DNA, complete genome
          Length = 16848

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 127   taaaaattacacctaaactaaccttc 152
             |||||||||| |||||||||||||||
Sbjct: 13457 taaaaattacccctaaactaaccttc 13482
to top
>gb|BC073708.1| Xenopus laevis MGC83646 protein, mRNA (cDNA clone MGC:83646
           IMAGE:5085171), complete cds
          Length = 3173

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 469 ctactgcttcttcccggtccaacac 493
           |||||||||||||| ||||||||||
Sbjct: 524 ctactgcttcttccaggtccaacac 500
to top
>gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, complete sequence
          Length = 182194

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 468  gctactgcttcttcccggtcc 488
            |||||||||||||||||||||
Sbjct: 6413 gctactgcttcttcccggtcc 6393
to top
>gb|AE002149.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 50 of 59 of the
             complete genome
          Length = 14175

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 94    aaacattttgtgattttaaca 114
             |||||||||||||||||||||
Sbjct: 12019 aaacattttgtgattttaaca 12039
to top
>gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, complete sequence
          Length = 215114

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 468    gctactgcttcttcccggtcc 488
              |||||||||||||||||||||
Sbjct: 117618 gctactgcttcttcccggtcc 117638
to top
>gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, complete sequence
          Length = 166567

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 468    gctactgcttcttcccggtcc 488
              |||||||||||||||||||||
Sbjct: 101548 gctactgcttcttcccggtcc 101528
to top
>dbj|BS000655.1| Pan troglodytes chromosome Y clone:PTB-215M20, complete sequences
          Length = 152092

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 468   gctactgcttcttcccggtcc 488
             |||||||||||||||||||||
Sbjct: 18521 gctactgcttcttcccggtcc 18501
to top
>dbj|BS000615.1| Pan troglodytes chromosome Y clone:PTBY-009P07, complete sequences
          Length = 105898

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 468   gctactgcttcttcccggtcc 488
             |||||||||||||||||||||
Sbjct: 22896 gctactgcttcttcccggtcc 22876
to top
>dbj|BS000669.1| Pan troglodytes chromosome Y clone:PTB-529M03, complete sequences
          Length = 163369

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 468    gctactgcttcttcccggtcc 488
              |||||||||||||||||||||
Sbjct: 154529 gctactgcttcttcccggtcc 154509
to top
>dbj|BS000609.1| Pan troglodytes chromosome Y clone:PTB-217K15, complete sequences
          Length = 146625

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 468   gctactgcttcttcccggtcc 488
             |||||||||||||||||||||
Sbjct: 85874 gctactgcttcttcccggtcc 85894
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 468      gctactgcttcttcccggtcc 488
                |||||||||||||||||||||
Sbjct: 21912476 gctactgcttcttcccggtcc 21912456



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 468      gctactgcttcttcccggtcc 488
                |||||||||||||||||||||
Sbjct: 21676276 gctactgcttcttcccggtcc 21676296
to top
>gb|AC095063.2| Homo sapiens BAC clone RP11-533K12 from 4, complete sequence
          Length = 153814

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 262   gtgttcttggtttctagaatg 282
             |||||||||||||||||||||
Sbjct: 18278 gtgttcttggtttctagaatg 18298
to top
>emb|Z82082.1|CEZC334 Caenorhabditis elegans Cosmid ZC334, complete sequence
          Length = 35836

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 157   attaagatacaacaaaatacaacat 181
             ||||| |||||||||||||||||||
Sbjct: 10167 attaaaatacaacaaaatacaacat 10191
to top
>gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome 12, complete sequence
          Length = 199958

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   actggtgttcttggtttcta 277
             ||||||||||||||||||||
Sbjct: 13082 actggtgttcttggtttcta 13101
to top
>gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosome 7, complete sequence
          Length = 151249

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 86    gatgaatgaaacattttgtgattt 109
             |||||||||| |||||||||||||
Sbjct: 51275 gatgaatgaatcattttgtgattt 51298
to top
>gb|AC112158.4| Mus musculus BAC clone RP24-116K14 from chromosome 15, complete
             sequence
          Length = 175171

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    tgatgaatgaaacattttgt 104
             ||||||||||||||||||||
Sbjct: 73081 tgatgaatgaaacattttgt 73100
to top
>gb|AC123042.2| Mus musculus BAC clone RP24-545O17 from 10, complete sequence
          Length = 177899

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    tgacgatgcagctactgctt 477
              ||||||||||||||||||||
Sbjct: 118851 tgacgatgcagctactgctt 118832
to top
>emb|AL021937.1|HS149A16 Human DNA sequence from clone RP1-149A16 on chromosome 22 Contains four
              novel genes (LOC339666, HSPC117), the RFPL3 gene for ret
              finger protein-like 3, a immunoglobulin lambda chain
              pseudogene, the RFPL3S gene for ret finger protein-like 3
              antisense, the BPIL2 gene for
              bactericidal/permeability-increasing protein-like 2, the 5'
              end of the FBXO7 gene for F-box protein 7 and three CpG
              islands, complete sequence
          Length = 173354

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    tgttcttggtttctagaatg 282
              ||||||||||||||||||||
Sbjct: 157472 tgttcttggtttctagaatg 157491
to top
>emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chromosome 11 Contains the
              3' end of the Gabrb2 gene for subunit beta 2
              gamma-aminobutyric acid (GABA-A) receptor, complete
              sequence
          Length = 195923

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    cattaagatacaacaaaata 175
              ||||||||||||||||||||
Sbjct: 164575 cattaagatacaacaaaata 164594
to top
>gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence
          Length = 208895

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    tgttcttggtttctagaatg 282
              ||||||||||||||||||||
Sbjct: 132750 tgttcttggtttctagaatg 132731
to top
>gb|AC106882.5| Homo sapiens BAC clone RP11-768B22 from 4, complete sequence
          Length = 176692

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 114    atacaacatactctaaaaattaca 137
              ||||||||||| ||||||||||||
Sbjct: 155759 atacaacatacactaaaaattaca 155782
to top
>dbj|AK024235.1| Homo sapiens cDNA FLJ14173 fis, clone NT2RP2002755
          Length = 2882

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 114  atacaacatactctaaaaattaca 137
            ||||||||||| ||||||||||||
Sbjct: 2074 atacaacatacactaaaaattaca 2051
to top
>gb|AC026774.7| Homo sapiens chromosome 5 clone CTC-235G5, complete sequence
          Length = 108451

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   catactctaaaaattacacc 139
             ||||||||||||||||||||
Sbjct: 66424 catactctaaaaattacacc 66443
to top
>dbj|AP004237.1| Proteus vulgaris plasmid Rts1 DNA, complete sequence
          Length = 217182

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   acccgcaggtgtaattacca 252
             ||||||||||||||||||||
Sbjct: 11119 acccgcaggtgtaattacca 11100
to top
>gb|AC113815.6| Rattus norvegicus  BAC CH230-221C20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 229621

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    atacaacaaaatacaacatg 182
              ||||||||||||||||||||
Sbjct: 122831 atacaacaaaatacaacatg 122850
to top
>gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromosome unknown, complete
              sequence
          Length = 190101

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    tgttcttggtttctagaatg 282
              ||||||||||||||||||||
Sbjct: 168639 tgttcttggtttctagaatg 168620
to top
>gb|AC090066.2| Homo sapiens chromosome 5 clone CTC-277N16, complete sequence
          Length = 89420

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   catactctaaaaattacacc 139
             ||||||||||||||||||||
Sbjct: 66424 catactctaaaaattacacc 66443
to top
>emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in linkage group 25,
              complete sequence
          Length = 232304

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     ttgatgaatgaaacattttg 103
              ||||||||||||||||||||
Sbjct: 173049 ttgatgaatgaaacattttg 173030
to top
>gb|AC017047.4|AC017047 Homo sapiens BAC clone RP11-323F10 from X, complete sequence
          Length = 180322

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 525    aagaacttgtcttgacaggt 544
              ||||||||||||||||||||
Sbjct: 167592 aagaacttgtcttgacaggt 167573
to top
>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5,
             complete sequence
          Length = 197352

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    cattttgtgattttaacata 116
             ||||||||||||||||||||
Sbjct: 75500 cattttgtgattttaacata 75481
to top
>gb|AC155307.2| Mus musculus BAC clone RP24-147F17 from 15, complete sequence
          Length = 190527

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     tgatgaatgaaacattttgt 104
              ||||||||||||||||||||
Sbjct: 156664 tgatgaatgaaacattttgt 156645
to top
>emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 in linkage group 21,
            complete sequence
          Length = 180526

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   ttgatgaatgaaacattttg 103
            ||||||||||||||||||||
Sbjct: 2658 ttgatgaatgaaacattttg 2677
to top
>gb|AC006539.1|AC006539 Homo sapiens chromosome 19, BAC 39498 (CIT-B-26L23), complete sequence
          Length = 114739

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   actctaaaaattacacctaa 142
             ||||||||||||||||||||
Sbjct: 42221 actctaaaaattacacctaa 42240
to top
>emb|AL929267.14| Zebrafish DNA sequence from clone CH211-2M15 in linkage group 14,
             complete sequence
          Length = 175892

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    attttgtgattttaacatac 117
             ||||||||||||||||||||
Sbjct: 85435 attttgtgattttaacatac 85416
to top
>gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, complete sequence
          Length = 189381

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 86     gatgaatgaaacattttgtgattt 109
              |||||||||| |||||||||||||
Sbjct: 144990 gatgaatgaatcattttgtgattt 145013
to top
>gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete sequence
          Length = 198813

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 86     gatgaatgaaacattttgtgattt 109
              |||||||||| |||||||||||||
Sbjct: 178598 gatgaatgaatcattttgtgattt 178575
to top
>gb|AC130829.4| Mus musculus BAC clone RP23-451I11 from 12, complete sequence
          Length = 189692

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    actggtgttcttggtttcta 277
              ||||||||||||||||||||
Sbjct: 138988 actggtgttcttggtttcta 139007


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,079,016
Number of Sequences: 3902068
Number of extensions: 5079016
Number of successful extensions: 90999
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90853
Number of HSP's gapped (non-prelim): 146
length of query: 586
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 563
effective length of database: 17,143,297,704
effective search space: 9651676607352
effective search space used: 9651676607352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top