ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY505014.1| Thermomicrobia bacterium PRI-1686 alpha-L-rhamnos... 42 0.36
2gb|BC033405.1| Mus musculus RIKEN cDNA 330010C22 gene, mRNA (cDN... 38 5.6
3dbj|AK052224.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 38 5.6
4emb|AL611985.22| Mouse DNA sequence from clone RP23-421E12 on ch... 38 5.6

>gb|AY505014.1| Thermomicrobia bacterium PRI-1686 alpha-L-rhamnosidase B (rhmB) gene,
            complete cds
          Length = 2865

 Score = 42.1 bits (21), Expect = 0.36
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 18   cccatctctggtcggatgaac 38
            |||||||||||||||||||||
Sbjct: 2219 cccatctctggtcggatgaac 2239



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>gb|BC033405.1| Mus musculus RIKEN cDNA 330010C22 gene, mRNA (cDNA clone
            IMAGE:5357632)
          Length = 3561

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 8    tccagagtaccccatctct 26
            |||||||||||||||||||
Sbjct: 1224 tccagagtaccccatctct 1206



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>dbj|AK052224.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330010C22 product:unclassifiable, full
            insert sequence
          Length = 3195

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 8    tccagagtaccccatctct 26
            |||||||||||||||||||
Sbjct: 1350 tccagagtaccccatctct 1332



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>emb|AL611985.22| Mouse DNA sequence from clone RP23-421E12 on chromosome 4, complete
             sequence
          Length = 219205

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     tccagagtaccccatctct 26
             |||||||||||||||||||
Sbjct: 58070 tccagagtaccccatctct 58088


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 739,998
Number of Sequences: 3902068
Number of extensions: 739998
Number of successful extensions: 21651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21647
Number of HSP's gapped (non-prelim): 4
length of query: 122
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 101
effective length of database: 17,151,101,840
effective search space: 1732261285840
effective search space used: 1732261285840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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