ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7e10 |
|---|---|
| Clone Library Name | barley_pub |
>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC| 2.7.11.1) Length = 901 Score = 73.9 bits (180), Expect = 2e-13 Identities = 35/39 (89%), Positives = 35/39 (89%) Frame = -3 Query: 458 RTTTDGRNVGSSIGDGLRSLEXEIGPASPQENLYLQHNF 342 R TDGRNVGSSIGDGLRSLE EI PASPQENLYLQHNF Sbjct: 863 RRATDGRNVGSSIGDGLRSLEEEIAPASPQENLYLQHNF 901
>SYFB_BORPE (Q7VVR5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 341 RSCAASTGSPVETPAQSLXPVTADHLL 421 R AA TG+P+ PA PVT DH L Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203
>SYFB_BORPA (Q7W7C6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 341 RSCAASTGSPVETPAQSLXPVTADHLL 421 R AA TG+P+ PA PVT DH L Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203
>SYFB_BORBR (Q7WKR4) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 341 RSCAASTGSPVETPAQSLXPVTADHLL 421 R AA TG+P+ PA PVT DH L Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203
>CLC14_MOUSE (Q8VCP9) C-type lectin domain family 14 member A precursor| Length = 459 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -1 Query: 121 PVL*LADTCKCVVVFLLLVSLQISIIFSSTVLSIFSLC 8 PV DT VV L+ +++ + ++ + TVL +F LC Sbjct: 376 PVSLTFDTSSTVVFILVSIAVIVLVVLTITVLGLFKLC 413
>EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)| (Exo-1,3-beta-glucanase) Length = 429 Score = 28.9 bits (63), Expect = 6.6 Identities = 11/40 (27%), Positives = 21/40 (52%) Frame = +3 Query: 15 EKMLNTVDENIMLICRETNNRKTTTHLHVSASYRTGLINC 134 E++ T+DE+I ++C + T H +V + L +C Sbjct: 285 EEVGRTIDEHISVVCEQGKETLTEAHWNVVGEWSAALTDC 324
>UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 262 Score = 28.9 bits (63), Expect = 6.6 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -1 Query: 328 RSAENMETVCRF--KFRLCDLLLWPFRREDLAI*STYWKDF*HLEAFLCRLIRS 173 + E+++ V R + R+ + LLW +L TYW DF ++ L R IRS Sbjct: 201 KELEDIDLVIRSSGEIRISNFLLWHIAYSELFFVDTYWPDFRKID--LWRAIRS 252
>RL7A_CHICK (P32429) 60S ribosomal protein L7a| Length = 265 Score = 28.5 bits (62), Expect = 8.6 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = -1 Query: 391 RLGRRLHRRTCTC 353 RLGR +HR+TCTC Sbjct: 188 RLGRLVHRKTCTC 200
>SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 935 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +3 Query: 27 NTVDENIMLICRETNNRKTTTHLHVSASYRTGLINCGHSTYK 152 N D+N+ R+T+ K T LH Y G ++ GH+ K Sbjct: 31 NWYDKNLYQQIRQTSKGKKTFILHDGPPYANGNLHLGHAVNK 72
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = -1 Query: 208 HLEAFLCRLIRSSYNCHLYL*VE----WPQLMSPVL*LADTCK 92 HL+ LCR +S +CH Y VE +L SP+L + D K Sbjct: 157 HLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVK 199
>PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A)| Length = 387 Score = 28.5 bits (62), Expect = 8.6 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%) Frame = +3 Query: 3 TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHSTYKYKWQL* 170 TP + M N V +++ + +++ K + + + +SY TG +N +Y+ WQ+ Sbjct: 195 TPVFDNMWNEGLVSQDLFSVYLSSDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQIT 254 Query: 171 DDRINLQRNASRC*KSFQYV-------LYIARSSLRNGQSNRSQSLNLKRQTVSMFSA 323 D +++ C S Q + L S++ N QS S NL + V SA Sbjct: 255 MDSVSINGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVISCSA 312
>PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Pepsin A)| Length = 387 Score = 28.5 bits (62), Expect = 8.6 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%) Frame = +3 Query: 3 TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHSTYKYKWQL* 170 TP + M N V +++ + +++ K + + + +SY TG +N +Y+ WQ+ Sbjct: 195 TPVFDNMWNEGLVSQDLFSVYLSSDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQIT 254 Query: 171 DDRINLQRNASRC*KSFQYV-------LYIARSSLRNGQSNRSQSLNLKRQTVSMFSA 323 D +++ C S Q + L S++ N QS S NL + V SA Sbjct: 255 MDSVSINGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVISCSA 312 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,092,849 Number of Sequences: 219361 Number of extensions: 1393913 Number of successful extensions: 3661 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3572 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3661 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
