ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479841.1| Oryza sativa (japonica cultivar-group), mRNA 135 2e-28
2ref|XM_479840.1| Oryza sativa (japonica cultivar-group), mRNA 135 2e-28
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
4dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
5dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
6dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
7dbj|AK101512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
8dbj|AK065395.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
9gb|AC144530.11| Homo sapiens 3 BAC RP11-237O3 (Roswell Park Canc... 48 0.035
10emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome 5, BA... 44 0.55
11ref|NM_120282.2| Arabidopsis thaliana unknown protein AT5G02040 ... 42 2.2
12ref|NM_180422.1| Arabidopsis thaliana unknown protein AT5G02040 ... 42 2.2
13gb|AY079325.1| Arabidopsis thaliana unknown protein (At5g02040) ... 42 2.2
14gb|AY045975.1| Arabidopsis thaliana unknown protein (At5g02040) ... 42 2.2
15gb|AY054290.1| Arabidopsis thaliana AT5g02040/T7H20_90 mRNA, com... 42 2.2
16emb|BX832801.1|CNS09YS6 Arabidopsis thaliana Full-length cDNA Co... 42 2.2
17gb|AY085842.1| Arabidopsis thaliana clone 18955 mRNA, complete s... 42 2.2
18gb|AC153831.4| Mus musculus 6 BAC RP23-291M9 (Roswell Park Cance... 42 2.2
19gb|AC154022.2| Mus musculus 6 BAC RP24-402L3 (Roswell Park Cance... 42 2.2
20gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 8.6
21gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, com... 40 8.6
22gb|AC124629.11| Mus musculus chromosome 7, clone RP23-437A23, co... 40 8.6
23gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, co... 40 8.6
24ref|XM_708901.1| Candida albicans SC5314 hypothetical protein (C... 40 8.6
25ref|XM_708843.1| Candida albicans SC5314 hypothetical protein (C... 40 8.6
26gb|AC183532.3| Pan troglodytes BAC clone CH251-569N9 from chromo... 40 8.6
27emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in ... 40 8.6
28gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, c... 40 8.6
29emb|AL772197.12| Human DNA sequence from clone RP11-24O6 on chro... 40 8.6
30emb|AL645608.30| Human DNA sequence from clone RP11-54O7 on chro... 40 8.6
31gb|AC069417.19| Homo sapiens 3 BAC RP11-385K11 (Roswell Park Can... 40 8.6
32gb|AC161234.7| Mus musculus chromosome 1, clone RP24-392G9, comp... 40 8.6
33emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, ... 40 8.6
34emb|AL080254.1|ATF21C20 Arabidopsis thaliana DNA chromosome 4, B... 40 8.6
35emb|BX640453.23| Zebrafish DNA sequence from clone DKEY-9L5 in l... 40 8.6
36emb|AJ721095.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.6
37emb|BX470266.10| Zebrafish DNA sequence from clone DKEYP-9D4 in ... 40 8.6
38gb|AC087878.7| Homo sapiens chromosome 15, clone RP11-62C7, comp... 40 8.6
39gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence 40 8.6
40gb|AC113146.2| Homo sapiens chromosome 15, clone RP11-265N7, com... 40 8.6
41gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 ma... 40 8.6
42gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, com... 40 8.6
43gb|BC013229.1|BC013229 Homo sapiens, clone IMAGE:3460553, mRNA 40 8.6
44gb|AC156632.2| Mus musculus BAC clone RP24-511E24 from chromosom... 40 8.6
45gb|AC103563.5| Homo sapiens BAC clone RP11-708D7 from 2, complet... 40 8.6
46gb|AC154582.2| Mus musculus BAC clone RP23-381N7 from chromosome... 40 8.6
47gb|BC040935.1| Homo sapiens, clone IMAGE:5122250, mRNA 40 8.6
48ref|NM_001008463.1| Gallus gallus phosphatidylglycerophosphate s... 40 8.6
49gb|AC005697.1|AC005697 Homo sapiens chromosome 17, clone hRPK.13... 40 8.6
50gb|AC153830.5| Mus musculus 10 BAC RP23-299H19 (Roswell Park Can... 40 8.6
51gb|AC140416.2| Mus musculus BAC clone RP24-347A16 from 6, comple... 40 8.6
52emb|AL731717.11| Mouse DNA sequence from clone RP23-92C4 on chro... 40 8.6
53emb|AL079296.1|HST000209 Homo sapiens mRNA full length insert cD... 40 8.6
54dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.6
55emb|AL671140.12| Mouse DNA sequence from clone RP23-80N18 on chr... 40 8.6 
>ref|XM_479841.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2025

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Minus

                                                                        
Query: 461  caaataccgtgcttacccatctaccatggaagacttccactctgtggatctatgaattct 520
            ||||||| ||| ||||| ||||||||||||||| ||||| | ||||| ||| ||||  ||
Sbjct: 1756 caaatacagtgtttaccaatctaccatggaagatttccagtgtgtgggtctgtgaaaact 1697

                                                                        
Query: 521  ttgtgcacaaaatctttcaaaccagtgtcatatacttcacagaaccgacgcggccaatcc 580
            || || |||||||||||||||||  | ||||||||||||||||| || | ||||||||||
Sbjct: 1696 ttctgaacaaaatctttcaaaccgttatcatatacttcacagaaacgtctcggccaatcc 1637

                                                                
Query: 581  tccggttccacgggtttggtccctagacctggcgccctgtccctggatccaa 632
            || ||||| || ||||||||||| || || || ||||||||||| |||||||
Sbjct: 1636 tctggttcaaccggtttggtcccaagcccaggagccctgtcccttgatccaa 1585



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 244  tatctgtatctacaaaagaatcatttctctcttagata 281
            ||||| |||||||||||||||||||||  |||||||||
Sbjct: 1960 tatctttatctacaaaagaatcatttccttcttagata 1923



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 347  aaaaatataccaaagagcaaa 367
            |||||||||||||||||||||
Sbjct: 1863 aaaaatataccaaagagcaaa 1843
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>ref|XM_479840.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2262

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Minus

                                                                        
Query: 461  caaataccgtgcttacccatctaccatggaagacttccactctgtggatctatgaattct 520
            ||||||| ||| ||||| ||||||||||||||| ||||| | ||||| ||| ||||  ||
Sbjct: 1993 caaatacagtgtttaccaatctaccatggaagatttccagtgtgtgggtctgtgaaaact 1934

                                                                        
Query: 521  ttgtgcacaaaatctttcaaaccagtgtcatatacttcacagaaccgacgcggccaatcc 580
            || || |||||||||||||||||  | ||||||||||||||||| || | ||||||||||
Sbjct: 1933 ttctgaacaaaatctttcaaaccgttatcatatacttcacagaaacgtctcggccaatcc 1874

                                                                
Query: 581  tccggttccacgggtttggtccctagacctggcgccctgtccctggatccaa 632
            || ||||| || ||||||||||| || || || ||||||||||| |||||||
Sbjct: 1873 tctggttcaaccggtttggtcccaagcccaggagccctgtcccttgatccaa 1822



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 244  tatctgtatctacaaaagaatcatttctctcttagata 281
            ||||| |||||||||||||||||||||  |||||||||
Sbjct: 2197 tatctttatctacaaaagaatcatttccttcttagata 2160



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 347  aaaaatataccaaagagcaaa 367
            |||||||||||||||||||||
Sbjct: 2100 aaaaatataccaaagagcaaa 2080
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Plus

                                                                           
Query: 461     caaataccgtgcttacccatctaccatggaagacttccactctgtggatctatgaattct 520
               ||||||| ||| ||||| ||||||||||||||| ||||| | ||||| ||| ||||  ||
Sbjct: 1191110 caaatacagtgtttaccaatctaccatggaagatttccagtgtgtgggtctgtgaaaact 1191169

                                                                           
Query: 521     ttgtgcacaaaatctttcaaaccagtgtcatatacttcacagaaccgacgcggccaatcc 580
               || || |||||||||||||||||  | ||||||||||||||||| || | ||||||||||
Sbjct: 1191170 ttctgaacaaaatctttcaaaccgttatcatatacttcacagaaacgtctcggccaatcc 1191229

                                                                   
Query: 581     tccggttccacgggtttggtccctagacctggcgccctgtccctggatccaa 632
               || ||||| || ||||||||||| || || || ||||||||||| |||||||
Sbjct: 1191230 tctggttcaaccggtttggtcccaagcccaggagccctgtcccttgatccaa 1191281



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                     
Query: 244     tatctgtatctacaaaagaatcatttctctcttagata 281
               ||||| |||||||||||||||||||||  |||||||||
Sbjct: 1190906 tatctttatctacaaaagaatcatttccttcttagata 1190943



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 347     aaaaatataccaaagagcaaa 367
               |||||||||||||||||||||
Sbjct: 1191003 aaaaatataccaaagagcaaa 1191023
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>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1203H11
          Length = 156561

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Plus

                                                                          
Query: 461    caaataccgtgcttacccatctaccatggaagacttccactctgtggatctatgaattct 520
              ||||||| ||| ||||| ||||||||||||||| ||||| | ||||| ||| ||||  ||
Sbjct: 104347 caaatacagtgtttaccaatctaccatggaagatttccagtgtgtgggtctgtgaaaact 104406

                                                                          
Query: 521    ttgtgcacaaaatctttcaaaccagtgtcatatacttcacagaaccgacgcggccaatcc 580
              || || |||||||||||||||||  | ||||||||||||||||| || | ||||||||||
Sbjct: 104407 ttctgaacaaaatctttcaaaccgttatcatatacttcacagaaacgtctcggccaatcc 104466

                                                                  
Query: 581    tccggttccacgggtttggtccctagacctggcgccctgtccctggatccaa 632
              || ||||| || ||||||||||| || || || ||||||||||| |||||||
Sbjct: 104467 tctggttcaaccggtttggtcccaagcccaggagccctgtcccttgatccaa 104518



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 244    tatctgtatctacaaaagaatcatttctctcttagata 281
              ||||| |||||||||||||||||||||  |||||||||
Sbjct: 104143 tatctttatctacaaaagaatcatttccttcttagata 104180



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 347    aaaaatataccaaagagcaaa 367
              |||||||||||||||||||||
Sbjct: 104240 aaaaatataccaaagagcaaa 104260
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>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0073J19
          Length = 165174

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Plus

                                                                         
Query: 461   caaataccgtgcttacccatctaccatggaagacttccactctgtggatctatgaattct 520
             ||||||| ||| ||||| ||||||||||||||| ||||| | ||||| ||| ||||  ||
Sbjct: 20417 caaatacagtgtttaccaatctaccatggaagatttccagtgtgtgggtctgtgaaaact 20476

                                                                         
Query: 521   ttgtgcacaaaatctttcaaaccagtgtcatatacttcacagaaccgacgcggccaatcc 580
             || || |||||||||||||||||  | ||||||||||||||||| || | ||||||||||
Sbjct: 20477 ttctgaacaaaatctttcaaaccgttatcatatacttcacagaaacgtctcggccaatcc 20536

                                                                 
Query: 581   tccggttccacgggtttggtccctagacctggcgccctgtccctggatccaa 632
             || ||||| || ||||||||||| || || || ||||||||||| |||||||
Sbjct: 20537 tctggttcaaccggtttggtcccaagcccaggagccctgtcccttgatccaa 20588



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 244   tatctgtatctacaaaagaatcatttctctcttagata 281
             ||||| |||||||||||||||||||||  |||||||||
Sbjct: 20213 tatctttatctacaaaagaatcatttccttcttagata 20250



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 347   aaaaatataccaaagagcaaa 367
             |||||||||||||||||||||
Sbjct: 20310 aaaaatataccaaagagcaaa 20330
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>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091F23
          Length = 147699

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Plus

                                                                         
Query: 461   caaataccgtgcttacccatctaccatggaagacttccactctgtggatctatgaattct 520
             ||||||| ||| ||||| ||||||||||||||| ||||| | ||||| ||| ||||  ||
Sbjct: 58189 caaatacagtgtttaccaatctaccatggaagatttccagtgtgtgggtctgtgaaaact 58248

                                                                         
Query: 521   ttgtgcacaaaatctttcaaaccagtgtcatatacttcacagaaccgacgcggccaatcc 580
             || || |||||||||||||||||  | ||||||||||||||||| || | ||||||||||
Sbjct: 58249 ttctgaacaaaatctttcaaaccgttatcatatacttcacagaaacgtctcggccaatcc 58308

                                                                 
Query: 581   tccggttccacgggtttggtccctagacctggcgccctgtccctggatccaa 632
             || ||||| || ||||||||||| || || || ||||||||||| |||||||
Sbjct: 58309 tctggttcaaccggtttggtcccaagcccaggagccctgtcccttgatccaa 58360



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 244   tatctgtatctacaaaagaatcatttctctcttagata 281
             ||||| |||||||||||||||||||||  |||||||||
Sbjct: 57985 tatctttatctacaaaagaatcatttccttcttagata 58022



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 347   aaaaatataccaaagagcaaa 367
             |||||||||||||||||||||
Sbjct: 58082 aaaaatataccaaagagcaaa 58102
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>dbj|AK101512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046D19, full
            insert sequence
          Length = 2260

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Minus

                                                                        
Query: 461  caaataccgtgcttacccatctaccatggaagacttccactctgtggatctatgaattct 520
            ||||||| ||| ||||| ||||||||||||||| ||||| | ||||| ||| ||||  ||
Sbjct: 1991 caaatacagtgtttaccaatctaccatggaagatttccagtgtgtgggtctgtgaaaact 1932

                                                                        
Query: 521  ttgtgcacaaaatctttcaaaccagtgtcatatacttcacagaaccgacgcggccaatcc 580
            || || |||||||||||||||||  | ||||||||||||||||| || | ||||||||||
Sbjct: 1931 ttctgaacaaaatctttcaaaccgttatcatatacttcacagaaacgtctcggccaatcc 1872

                                                                
Query: 581  tccggttccacgggtttggtccctagacctggcgccctgtccctggatccaa 632
            || ||||| || ||||||||||| || || || ||||||||||| |||||||
Sbjct: 1871 tctggttcaaccggtttggtcccaagcccaggagccctgtcccttgatccaa 1820



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 244  tatctgtatctacaaaagaatcatttctctcttagata 281
            ||||| |||||||||||||||||||||  |||||||||
Sbjct: 2195 tatctttatctacaaaagaatcatttccttcttagata 2158



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 347  aaaaatataccaaagagcaaa 367
            |||||||||||||||||||||
Sbjct: 2098 aaaaatataccaaagagcaaa 2078
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>dbj|AK065395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022D06, full
            insert sequence
          Length = 2024

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Minus

                                                                        
Query: 461  caaataccgtgcttacccatctaccatggaagacttccactctgtggatctatgaattct 520
            ||||||| ||| ||||| ||||||||||||||| ||||| | ||||| ||| ||||  ||
Sbjct: 1756 caaatacagtgtttaccaatctaccatggaagatttccagtgtgtgggtctgtgaaaact 1697

                                                                        
Query: 521  ttgtgcacaaaatctttcaaaccagtgtcatatacttcacagaaccgacgcggccaatcc 580
            || || |||||||||||||||||  | ||||||||||||||||| || | ||||||||||
Sbjct: 1696 ttctgaacaaaatctttcaaaccgttatcatatacttcacagaaacgtctcggccaatcc 1637

                                                                
Query: 581  tccggttccacgggtttggtccctagacctggcgccctgtccctggatccaa 632
            || ||||| || ||||||||||| || || || ||||||||||| |||||||
Sbjct: 1636 tctggttcaaccggtttggtcccaagcccaggagccctgtcccttgatccaa 1585



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 244  tatctgtatctacaaaagaatcatttctctcttagata 281
            ||||| |||||||||||||||||||||  |||||||||
Sbjct: 1959 tatctttatctacaaaagaatcatttccttcttagata 1922



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 347  aaaaatataccaaagagcaaa 367
            |||||||||||||||||||||
Sbjct: 1863 aaaaatataccaaagagcaaa 1843
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>gb|AC144530.11| Homo sapiens 3 BAC RP11-237O3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 42344

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 346   taaaaatataccaaagagcaaaac 369
             ||||||||||||||||||||||||
Sbjct: 16320 taaaaatataccaaagagcaaaac 16297
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>emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome 5, BAC clone T7H20 (ESSA project)
          Length = 87581

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 349   aaatataccaaagagcaaaacccact 374
             ||||||||||||||||||||| ||||
Sbjct: 33218 aaatataccaaagagcaaaactcact 33193
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>ref|NM_120282.2| Arabidopsis thaliana unknown protein AT5G02040 transcript variant
           AT5G02040.1 mRNA, complete cds
          Length = 1217

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 349 aaatataccaaagagcaaaac 369
           |||||||||||||||||||||
Sbjct: 742 aaatataccaaagagcaaaac 722
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>ref|NM_180422.1| Arabidopsis thaliana unknown protein AT5G02040 transcript variant
           AT5G02040.2 mRNA, complete cds
          Length = 1211

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 349 aaatataccaaagagcaaaac 369
           |||||||||||||||||||||
Sbjct: 742 aaatataccaaagagcaaaac 722
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>gb|AY079325.1| Arabidopsis thaliana unknown protein (At5g02040) mRNA, complete cds
          Length = 661

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 349 aaatataccaaagagcaaaac 369
           |||||||||||||||||||||
Sbjct: 478 aaatataccaaagagcaaaac 458
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>gb|AY045975.1| Arabidopsis thaliana unknown protein (At5g02040) mRNA, complete cds
          Length = 1237

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 349 aaatataccaaagagcaaaac 369
           |||||||||||||||||||||
Sbjct: 742 aaatataccaaagagcaaaac 722
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>gb|AY054290.1| Arabidopsis thaliana AT5g02040/T7H20_90 mRNA, complete cds
          Length = 1107

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 349 aaatataccaaagagcaaaac 369
           |||||||||||||||||||||
Sbjct: 637 aaatataccaaagagcaaaac 617
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>emb|BX832801.1|CNS09YS6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL13ZE05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1046

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 349 aaatataccaaagagcaaaac 369
           |||||||||||||||||||||
Sbjct: 637 aaatataccaaagagcaaaac 617
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>gb|AY085842.1| Arabidopsis thaliana clone 18955 mRNA, complete sequence
          Length = 1124

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 349 aaatataccaaagagcaaaac 369
           |||||||||||||||||||||
Sbjct: 649 aaatataccaaagagcaaaac 629
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>gb|AC153831.4| Mus musculus 6 BAC RP23-291M9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 202080

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   taagcactataattttagttg 157
             |||||||||||||||||||||
Sbjct: 32185 taagcactataattttagttg 32205
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>gb|AC154022.2| Mus musculus 6 BAC RP24-402L3 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 125205

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   taagcactataattttagttg 157
             |||||||||||||||||||||
Sbjct: 19210 taagcactataattttagttg 19190
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     ttatctgtatctacaaaaga 262
               ||||||||||||||||||||
Sbjct: 1540957 ttatctgtatctacaaaaga 1540938
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>gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, complete sequence
          Length = 197718

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    tgtgctgtgctgtgctgatc 461
              ||||||||||||||||||||
Sbjct: 147563 tgtgctgtgctgtgctgatc 147544
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>gb|AC124629.11| Mus musculus chromosome 7, clone RP23-437A23, complete sequence
          Length = 195322

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    accaaagagcaaaacccact 374
              ||||||||||||||||||||
Sbjct: 180447 accaaagagcaaaacccact 180428
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>gb|AC116472.14| Mus musculus chromosome 7, clone RP23-384B23, complete sequence
          Length = 216191

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    accaaagagcaaaacccact 374
              ||||||||||||||||||||
Sbjct: 195903 accaaagagcaaaacccact 195922
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>ref|XM_708901.1| Candida albicans SC5314 hypothetical protein (CaO19.9867), mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 508  atctatgaattctttgtgca 527
            ||||||||||||||||||||
Sbjct: 1294 atctatgaattctttgtgca 1313
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>ref|XM_708843.1| Candida albicans SC5314 hypothetical protein (CaO19.2331), mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 508  atctatgaattctttgtgca 527
            ||||||||||||||||||||
Sbjct: 1294 atctatgaattctttgtgca 1313
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>gb|AC183532.3| Pan troglodytes BAC clone CH251-569N9 from chromosome 2, complete
             sequence
          Length = 192494

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   ccatgtgctgtgctgtgctg 458
             ||||||||||||||||||||
Sbjct: 55926 ccatgtgctgtgctgtgctg 55907
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>emb|CR387978.12| Zebrafish DNA sequence from clone DKEY-33M5 in linkage group 1,
             complete sequence
          Length = 208746

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   aggtctaaaaatataccaaa 360
             ||||||||||||||||||||
Sbjct: 95850 aggtctaaaaatataccaaa 95869
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>gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, complete sequence
          Length = 256720

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ttgcagatttcagattgggg 126
             ||||||||||||||||||||
Sbjct: 67051 ttgcagatttcagattgggg 67070
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>emb|AL772197.12| Human DNA sequence from clone RP11-24O6 on chromosome X Contains the 5'
             end of the SH3KBP1 gene for SH3-domain kinase binding
             protein 1 (CIN85), two novel genes and one CpG island,
             complete sequence
          Length = 106342

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 495   ttccactctgtggatctatgaatt 518
             ||||||||||||||| ||||||||
Sbjct: 53887 ttccactctgtggatatatgaatt 53864
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>emb|AL645608.30| Human DNA sequence from clone RP11-54O7 on chromosome 1 Contains three
             novel genes, a novel gene (MGC45873), a novel gene
             (DKFZP564C186), a novel gene, a novel gene
             (DKFZP434H2010), a novel gene (MGC13275), the gene for
             bHLH factor Hes4 (Hes4), a ribosomal protein L39 (RPL39)
             pseudogene, a novel gene, the G1P2 gene for interferon
             alpha-inducible protein (clone IFI-15K), the AGRN gene for
             agrin, two novel genes and fifteen CpG islands, complete
             sequence
          Length = 186759

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   tgtgctgtgctgtgctgatc 461
             ||||||||||||||||||||
Sbjct: 10093 tgtgctgtgctgtgctgatc 10112
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>gb|AC069417.19| Homo sapiens 3 BAC RP11-385K11 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 107000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 434  atgtaccatgtgctgtgctg 453
            ||||||||||||||||||||
Sbjct: 3754 atgtaccatgtgctgtgctg 3773
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>gb|AC161234.7| Mus musculus chromosome 1, clone RP24-392G9, complete sequence
          Length = 141914

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    tgtgctgtgctgtgctgatc 461
              ||||||||||||||||||||
Sbjct: 121207 tgtgctgtgctgtgctgatc 121226
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>emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 53
          Length = 197568

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    tgaattctttgtgcacaaaa 532
              ||||||||||||||||||||
Sbjct: 125960 tgaattctttgtgcacaaaa 125979
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>emb|AL080254.1|ATF21C20 Arabidopsis thaliana DNA chromosome 4, BAC clone F21C20 (ESSA project)
          Length = 69563

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   tgaattctttgtgcacaaaa 532
             ||||||||||||||||||||
Sbjct: 30477 tgaattctttgtgcacaaaa 30496
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>emb|BX640453.23| Zebrafish DNA sequence from clone DKEY-9L5 in linkage group 12, complete
              sequence
          Length = 223071

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 336    caacaaggtctaaaaatata 355
              ||||||||||||||||||||
Sbjct: 134721 caacaaggtctaaaaatata 134702
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>emb|AJ721095.1| Gallus gallus mRNA for hypothetical protein, clone 35a14
          Length = 3220

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 533  tctttcaaaccagtgtcatatact 556
            ||||||||| ||||||||||||||
Sbjct: 3086 tctttcaaaacagtgtcatatact 3109
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>emb|BX470266.10| Zebrafish DNA sequence from clone DKEYP-9D4 in linkage group 1,
             complete sequence
          Length = 194021

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   aggtctaaaaatataccaaa 360
             ||||||||||||||||||||
Sbjct: 16127 aggtctaaaaatataccaaa 16146
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>gb|AC087878.7| Homo sapiens chromosome 15, clone RP11-62C7, complete sequence
          Length = 166485

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   taatttcgtgtttcttcttt 407
             ||||||||||||||||||||
Sbjct: 43000 taatttcgtgtttcttcttt 42981
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>gb|AC103584.15| Bos taurus clone rp42-51p13, complete sequence
          Length = 177017

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    accatgtgctgtgctgtgct 457
              ||||||||||||||||||||
Sbjct: 100535 accatgtgctgtgctgtgct 100554
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>gb|AC113146.2| Homo sapiens chromosome 15, clone RP11-265N7, complete sequence
          Length = 178395

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   taatttcgtgtttcttcttt 407
             ||||||||||||||||||||
Sbjct: 10160 taatttcgtgtttcttcttt 10179
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>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete
             sequence
          Length = 104009

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   tgtatctacaaaagaatcat 267
             ||||||||||||||||||||
Sbjct: 26295 tgtatctacaaaagaatcat 26276
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>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence
          Length = 243771

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    ttgcagatttcagattgggg 126
              ||||||||||||||||||||
Sbjct: 241999 ttgcagatttcagattgggg 242018
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>gb|BC013229.1|BC013229 Homo sapiens, clone IMAGE:3460553, mRNA
          Length = 2790

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 434 atgtaccatgtgctgtgctg 453
           ||||||||||||||||||||
Sbjct: 983 atgtaccatgtgctgtgctg 964
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>gb|AC156632.2| Mus musculus BAC clone RP24-511E24 from chromosome 12, complete sequence
          Length = 173515

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    ccatgtgctgtgctgtgctg 458
              ||||||||||||||||||||
Sbjct: 147642 ccatgtgctgtgctgtgctg 147661
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>gb|AC103563.5| Homo sapiens BAC clone RP11-708D7 from 2, complete sequence
          Length = 131132

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   ccatgtgctgtgctgtgctg 458
             ||||||||||||||||||||
Sbjct: 42666 ccatgtgctgtgctgtgctg 42685
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>gb|AC154582.2| Mus musculus BAC clone RP23-381N7 from chromosome 12, complete
            sequence
          Length = 194302

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  ccatgtgctgtgctgtgctg 458
            ||||||||||||||||||||
Sbjct: 8570 ccatgtgctgtgctgtgctg 8589
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>gb|BC040935.1| Homo sapiens, clone IMAGE:5122250, mRNA
          Length = 2036

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 434 atgtaccatgtgctgtgctg 453
           ||||||||||||||||||||
Sbjct: 228 atgtaccatgtgctgtgctg 209
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>ref|NM_001008463.1| Gallus gallus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA
          Length = 3220

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 533  tctttcaaaccagtgtcatatact 556
            ||||||||| ||||||||||||||
Sbjct: 3086 tctttcaaaacagtgtcatatact 3109
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>gb|AC005697.1|AC005697 Homo sapiens chromosome 17, clone hRPK.138_P_22, complete sequence
          Length = 174503

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   tctgtttttctctccgttgt 432
             ||||||||||||||||||||
Sbjct: 72238 tctgtttttctctccgttgt 72219
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>gb|AC153830.5| Mus musculus 10 BAC RP23-299H19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 200647

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 163    acccacagtaagatcagacaaaga 186
              ||||||||| ||||||||||||||
Sbjct: 110307 acccacagtcagatcagacaaaga 110330
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>gb|AC140416.2| Mus musculus BAC clone RP24-347A16 from 6, complete sequence
          Length = 188390

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   cagtgtcatatacttcacag 562
             ||||||||||||||||||||
Sbjct: 52932 cagtgtcatatacttcacag 52913
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>emb|AL731717.11| Mouse DNA sequence from clone RP23-92C4 on chromosome X, complete
              sequence
          Length = 234900

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    tatgaattctttgtgcacaa 530
              ||||||||||||||||||||
Sbjct: 212073 tatgaattctttgtgcacaa 212092
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>emb|AL079296.1|HST000209 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 609395
          Length = 2310

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 495  ttccactctgtggatctatgaatt 518
            ||||||||||||||| ||||||||
Sbjct: 1156 ttccactctgtggatatatgaatt 1133
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>dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-138O22, complete
             sequences
          Length = 173185

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   tatctgtatctacaaaagaa 263
             ||||||||||||||||||||
Sbjct: 77420 tatctgtatctacaaaagaa 77439
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>emb|AL671140.12| Mouse DNA sequence from clone RP23-80N18 on chromosome 4, complete
             sequence
          Length = 131215

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   tgtgctgtgctgtgctgatc 461
             ||||||||||||||||||||
Sbjct: 65722 tgtgctgtgctgtgctgatc 65703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,738,710
Number of Sequences: 3902068
Number of extensions: 5738710
Number of successful extensions: 115038
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114838
Number of HSP's gapped (non-prelim): 200
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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