ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 228 2e-56
2gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 90 1e-14
3gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 90 1e-14
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
5dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
6dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 90 1e-14
8ref|XM_480279.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
10dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
11dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
12gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 54 6e-04
13gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 54 6e-04
14gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.009
15ref|XM_478005.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
16ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
18dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
19dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
20dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.54
21gb|AC121824.2| Mus musculus BAC clone RP23-467P15 from 18, compl... 42 2.2
22gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complet... 42 2.2
23dbj|AK161182.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 42 2.2
24gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 42 2.2
25gb|AC142106.4| Mus musculus BAC clone RP24-180L10 from 1, comple... 42 2.2
26gb|AC140367.3| Mus musculus BAC clone RP24-226L19 from 1, comple... 42 2.2
27gb|AC140461.4| Mus musculus BAC clone RP23-11M24 from 1, complet... 42 2.2
28ref|XM_635461.1| Dictyostelium discoideum hypothetical protein (... 40 8.5
29ref|XM_463174.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.5
30gb|DQ158085.1| Streptococcus equi subsp. equi collagen-like prot... 40 8.5
31gb|AY326314.1| Streptococcus equi collagen-like protein 3 (Scl3A... 40 8.5
32ref|XM_955477.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.5
33ref|XM_325462.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.5
34ref|XM_452647.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C10054g ... 40 8.5
35gb|AC156605.13| Mus musculus chromosome 7, clone RP23-305G5, com... 40 8.5
36gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.5
37gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, com... 40 8.5
38ref|NG_000839.1| Homo sapiens cystatin locus (CST@) on chromosom... 40 8.5
39gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genom... 40 8.5
40gb|AC141436.17| Medicago truncatula clone mth2-31k19, complete s... 40 8.5
41gb|AC139706.8| Medicago truncatula clone mth2-28n21, complete se... 40 8.5
42emb|AL591074.10| Human DNA sequence from clone XXyac-60D10 on ch... 40 8.5
43emb|AL354868.10| Human DNA sequence from clone RP11-339A7 on chr... 40 8.5
44emb|X69947.1|PHPMADS2 P.hybrida mRNA for pmads 2 40 8.5
45emb|X71417.1|PHFBP3 P.hybrida fbp3 mRNA 40 8.5
46emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.5
47emb|AJ242589.1|PFA242589 Plasmodium falciparum sub-1 gene for su... 40 8.5
48emb|AL683843.9| Mouse DNA sequence from clone RP23-217E1 on chro... 40 8.5
49gb|BC040984.1| Homo sapiens cDNA clone IMAGE:4801412 40 8.5
50gb|AC092305.2| Homo sapiens chromosome 19 clone LLNLR-229B1, com... 40 8.5
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
52gb|AC010606.7| Homo sapiens chromosome 19 clone CTB-25J19, compl... 40 8.5
53gb|AC015979.4|AC015979 Homo sapiens BAC clone RP11-538M13 from Y... 40 8.5
54gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, c... 40 8.5
55gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, co... 40 8.5
56emb|BX537286.4| Zebrafish DNA sequence from clone DKEY-28J4 in l... 40 8.5
57emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 i... 40 8.5
58emb|AL683810.10| Mouse DNA sequence from clone RP23-10L18 on chr... 40 8.5
59emb|AL671492.12| Mouse DNA sequence from clone RP23-286H11 on ch... 40 8.5
60emb|AL732482.8| Mouse DNA sequence from clone RP23-199C21 on chr... 40 8.5
61emb|AL732428.7| Mouse DNA sequence from clone RP23-347P2 on chro... 40 8.5 
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score =  228 bits (115), Expect = 2e-56
 Identities = 160/175 (91%)
 Strand = Plus / Minus

                                                                       
Query: 140 tgagcaggtggaatggcatggaataggtcaccagcaacatagttaacgataccatcactt 199
           ||||| ||||| | || |||||| ||||||||||| ||||||||||| | ||||||||||
Sbjct: 199 tgagctggtgggacggtatggaagaggtcaccagcgacatagttaacaacaccatcactt 140

                                                                       
Query: 200 ggaactttctcgatcaccttcggaaggtccaacacattgcacttgatatgcgggaaggcc 259
           || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gggactttctcgatcacctttggaaggtccaacacattgcacttgatatgcgggaaggcc 80

                                                                  
Query: 260 ttgacaatggccctagctgtcgttccatcaccaccacaacagtcggtgagtgact 314
           ||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct: 79  ttgacgatggcccttgcggtcgtcccatcaccaccacagcagtcggtgagtgact 25
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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                          
Query: 166    gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 225
              |||||| |||||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 119655 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 119596

                                                                       
Query: 226    gtccaacacattgcacttgatatgcgggaaggccttgacaatggccctagctgtcgt 282
              ||||| |||| ||||||||| ||| ||| |||||||| | |||||||| || |||||
Sbjct: 119595 gtccagcacagtgcacttgacatgagggtaggccttggcgatggccctcgccgtcgt 119539
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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                        
Query: 166  gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 225
            |||||| |||||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 5404 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 5345

                                                                     
Query: 226  gtccaacacattgcacttgatatgcgggaaggccttgacaatggccctagctgtcgt 282
            ||||| |||| ||||||||| ||| ||| |||||||| | |||||||| || |||||
Sbjct: 5344 gtccagcacagtgcacttgacatgagggtaggccttggcgatggccctcgccgtcgt 5288
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 99/117 (84%)
 Strand = Plus / Plus

                                                                            
Query: 166      gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 225
                |||||| |||||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 11494133 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 11494192

                                                                         
Query: 226      gtccaacacattgcacttgatatgcgggaaggccttgacaatggccctagctgtcgt 282
                ||||| |||| ||||||||| ||| ||| |||||||| | |||||||| || |||||
Sbjct: 11494193 gtccagcacagtgcacttgacatgagggtaggccttggcgatggccctcgccgtcgt 11494249



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 209     tcgatcaccttcggaaggtccaacacattgcacttgatatgcgggaa 255
               |||||||||||||| ||||||| |||  |||||||||| ||||||||
Sbjct: 7138295 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 7138341



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                            
Query: 121      taccttaagcatgagaacttgagcaggtggaatggcatggaataggtcaccagcaacata 180
                |||||| ||||||| | ||||||||||||| |||||  |||| | |||||| || |||||
Sbjct: 11330870 taccttgagcatgacagcttgagcaggtgggatggcgcggaacatgtcacccgctacata 11330929

                                 
Query: 181      gttaacgataccatcac 197
                ||| || | ||||||||
Sbjct: 11330930 gttcaccacaccatcac 11330946



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 138     cttgagcaggtggaatggcatggaataggtcaccagcaacatagttaac 186
               ||||||||||||| |  ||||| || | |||||| ||||||||||||||
Sbjct: 7138221 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 7138269
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>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
           insert sequence
          Length = 1362

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                       
Query: 166 gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 225
           |||||| |||||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 815 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 756

                                                                    
Query: 226 gtccaacacattgcacttgatatgcgggaaggccttgacaatggccctagctgtcgt 282
           ||||| |||| ||||||||| ||| ||| |||||||| | |||||||| || |||||
Sbjct: 755 gtccagcacagtgcacttgacatgagggtaggccttggcgatggccctcgccgtcgt 699
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>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
           insert sequence
          Length = 1264

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                       
Query: 166 gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 225
           |||||| |||||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 820 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 761

                                                                    
Query: 226 gtccaacacattgcacttgatatgcgggaaggccttgacaatggccctagctgtcgt 282
           ||||| |||| ||||||||| ||| ||| |||||||| | |||||||| || |||||
Sbjct: 760 gtccagcacagtgcacttgacatgagggtaggccttggcgatggccctcgccgtcgt 704
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 99/117 (84%)
 Strand = Plus / Plus

                                                                            
Query: 166      gtcaccagcaacatagttaacgataccatcacttggaactttctcgatcaccttcggaag 225
                |||||| |||||||||||||||| ||||||| | ||  | || ||||||||||| |||||
Sbjct: 11573322 gtcacctgcaacatagttaacgacaccatcattgggcgccttgtcgatcaccttgggaag 11573381

                                                                         
Query: 226      gtccaacacattgcacttgatatgcgggaaggccttgacaatggccctagctgtcgt 282
                ||||| |||| ||||||||| ||| ||| |||||||| | |||||||| || |||||
Sbjct: 11573382 gtccagcacagtgcacttgacatgagggtaggccttggcgatggccctcgccgtcgt 11573438



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 209     tcgatcaccttcggaaggtccaacacattgcacttgatatgcgggaa 255
               |||||||||||||| ||||||| |||  |||||||||| ||||||||
Sbjct: 7204266 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 7204312



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                            
Query: 121      taccttaagcatgagaacttgagcaggtggaatggcatggaataggtcaccagcaacata 180
                |||||| ||||||| | ||||||||||||| |||||  |||| | |||||| || |||||
Sbjct: 11410059 taccttgagcatgacagcttgagcaggtgggatggcgcggaacatgtcacccgctacata 11410118

                                 
Query: 181      gttaacgataccatcac 197
                ||| || | ||||||||
Sbjct: 11410119 gttcaccacaccatcac 11410135



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 138     cttgagcaggtggaatggcatggaataggtcaccagcaacatagttaac 186
               ||||||||||||| |  ||||| || | |||||| ||||||||||||||
Sbjct: 7204192 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 7204240
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>ref|XM_480279.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1116

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 238 gcacttgatatgcgggaaggccttgacaatggccct 273
           ||||||||| || |||||||||||||||||||||||
Sbjct: 708 gcacttgatgtgtgggaaggccttgacaatggccct 673
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                   
Query: 238     gcacttgatatgcgggaaggccttgacaatggccct 273
               ||||||||| || |||||||||||||||||||||||
Sbjct: 4047608 gcacttgatgtgtgggaaggccttgacaatggccct 4047573
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>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0462E11
          Length = 166115

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 238    gcacttgatatgcgggaaggccttgacaatggccct 273
              ||||||||| || |||||||||||||||||||||||
Sbjct: 134905 gcacttgatgtgtgggaaggccttgacaatggccct 134870
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>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0458D06
          Length = 166038

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 238   gcacttgatatgcgggaaggccttgacaatggccct 273
             ||||||||| || |||||||||||||||||||||||
Sbjct: 40721 gcacttgatgtgtgggaaggccttgacaatggccct 40686
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>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 209   tcgatcaccttcggaaggtccaacacattgcacttgatatgcgggaa 255
             |||||||||||||| ||||||| |||  |||||||||| ||||||||
Sbjct: 44260 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 44214



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 138   cttgagcaggtggaatggcatggaataggtcaccagcaacatagttaac 186
             ||||||||||||| |  ||||| || | |||||| ||||||||||||||
Sbjct: 44334 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 44286
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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 209   tcgatcaccttcggaaggtccaacacattgcacttgatatgcgggaa 255
             |||||||||||||| ||||||| |||  |||||||||| ||||||||
Sbjct: 51515 tcgatcaccttcgggaggtccagcaccgtgcacttgatgtgcgggaa 51561



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 138   cttgagcaggtggaatggcatggaataggtcaccagcaacatagttaac 186
             ||||||||||||| |  ||||| || | |||||| ||||||||||||||
Sbjct: 51441 cttgagcaggtgggacagcatgaaacatgtcacctgcaacatagttaac 51489
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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                          
Query: 121    taccttaagcatgagaacttgagcaggtggaatggcatggaataggtcaccagcaacata 180
              |||||| ||||||| | ||||||||||||| |||||  |||| | |||||| || |||||
Sbjct: 117228 taccttgagcatgacagcttgagcaggtgggatggcgcggaacatgtcacccgctacata 117287

                               
Query: 181    gttaacgataccatcac 197
              ||| || | ||||||||
Sbjct: 117288 gttcaccacaccatcac 117304
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>ref|XM_478005.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1026

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 221 ggaaggtccaacacattgcacttgatatgcgggaa 255
           |||||||||| |||  |||||||||||||||||||
Sbjct: 644 ggaaggtccagcaccgtgcacttgatatgcgggaa 610
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>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 221 ggaaggtccaacacattgcacttgatatgcgggaa 255
           |||||||||| |||  |||||||||||||||||||
Sbjct: 674 ggaaggtccagcacggtgcacttgatatgcgggaa 640
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 221      ggaaggtccaacacattgcacttgatatgcgggaa 255
                |||||||||| |||  |||||||||||||||||||
Sbjct: 16295257 ggaaggtccagcaccgtgcacttgatatgcgggaa 16295291



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 221      ggaaggtccaacacattgcacttgatatgcgggaa 255
                |||||||||| |||  |||||||||||||||||||
Sbjct: 16264584 ggaaggtccagcacggtgcacttgatatgcgggaa 16264618



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 221      ggaaggtccaacacattgcacttgatatgcgggaa 255
                |||||||||| |||  |||||||||||||||||||
Sbjct: 16220133 ggaaggtccagcacggtgcacttgatatgcgggaa 16220099
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>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0473C09
          Length = 141066

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 221  ggaaggtccaacacattgcacttgatatgcgggaa 255
            |||||||||| |||  |||||||||||||||||||
Sbjct: 1313 ggaaggtccagcaccgtgcacttgatatgcgggaa 1347
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>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1634_H04
          Length = 151699

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 221    ggaaggtccaacacattgcacttgatatgcgggaa 255
              |||||||||| |||  |||||||||||||||||||
Sbjct: 115695 ggaaggtccagcaccgtgcacttgatatgcgggaa 115729



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 221   ggaaggtccaacacattgcacttgatatgcgggaa 255
             |||||||||| |||  |||||||||||||||||||
Sbjct: 85022 ggaaggtccagcacggtgcacttgatatgcgggaa 85056



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 221   ggaaggtccaacacattgcacttgatatgcgggaa 255
             |||||||||| |||  |||||||||||||||||||
Sbjct: 40571 ggaaggtccagcacggtgcacttgatatgcgggaa 40537
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>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                       
Query: 128 agcatgagaacttgagcaggtggaatggcatggaataggtcaccagcaacatagttaacg 187
           ||||||| | ||||||||||||| |||||  |||| | |||||| || |||||||| || 
Sbjct: 870 agcatgacagcttgagcaggtgggatggcgcggaacatgtcacccgctacatagttcacc 811

                     
Query: 188 ataccatcac 197
           | ||||||||
Sbjct: 810 acaccatcac 801
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>gb|AC121824.2| Mus musculus BAC clone RP23-467P15 from 18, complete sequence
          Length = 195027

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 359   atccccaaatggtcatgggcagcca 383
             ||||||||||||||||||| |||||
Sbjct: 28439 atccccaaatggtcatgggaagcca 28463
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>gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complete sequence
          Length = 187332

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    tactctcaaaataatgagaaa 46
             |||||||||||||||||||||
Sbjct: 31980 tactctcaaaataatgagaaa 31960
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>dbj|AK161182.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4832408G11 product:erythrocyte protein
            band 4.1-like 4a, full insert sequence
          Length = 3778

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 359  atccccaaatggtcatgggcagcca 383
            ||||||||||||||||||| |||||
Sbjct: 1888 atccccaaatggtcatgggaagcca 1864
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>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 490 gtccttcttgaaccagtcagc 510
           |||||||||||||||||||||
Sbjct: 470 gtccttcttgaaccagtcagc 450
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>gb|AC142106.4| Mus musculus BAC clone RP24-180L10 from 1, complete sequence
          Length = 194634

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 471    gtgatggtggtggtgcgatgtccttcttg 499
              ||||||||||||||| | |||||||||||
Sbjct: 154469 gtgatggtggtggtggggtgtccttcttg 154441
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>gb|AC140367.3| Mus musculus BAC clone RP24-226L19 from 1, complete sequence
          Length = 183563

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 471    gtgatggtggtggtgcgatgtccttcttg 499
              ||||||||||||||| | |||||||||||
Sbjct: 166024 gtgatggtggtggtggggtgtccttcttg 166052
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>gb|AC140461.4| Mus musculus BAC clone RP23-11M24 from 1, complete sequence
          Length = 202209

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 380    gccaaagcttcatggaacatc 400
              |||||||||||||||||||||
Sbjct: 129695 gccaaagcttcatggaacatc 129715
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>ref|XM_635461.1| Dictyostelium discoideum hypothetical protein (DDB0204579), partial
           mRNA
          Length = 1566

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 466 aaatggtgatggtggtggtg 485
           ||||||||||||||||||||
Sbjct: 243 aaatggtgatggtggtggtg 262
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>ref|XM_463174.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 924

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 atggtgatggtggtggtgcg 487
           ||||||||||||||||||||
Sbjct: 555 atggtgatggtggtggtgcg 536
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>gb|DQ158085.1| Streptococcus equi subsp. equi collagen-like protein I (sclI) gene,
            complete cds
          Length = 1449

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  cagtcagctagccctaaggc 522
            ||||||||||||||||||||
Sbjct: 1291 cagtcagctagccctaaggc 1310
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>gb|AY326314.1| Streptococcus equi collagen-like protein 3 (Scl3A) gene, partial cds
          Length = 1473

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  cagtcagctagccctaaggc 522
            ||||||||||||||||||||
Sbjct: 1318 cagtcagctagccctaaggc 1337
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>ref|XM_955477.1| Neurospora crassa OR74A hypothetical protein (NCU05608.1) partial
           mRNA
          Length = 7530

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 386 gcttcatggaacatcttgtc 405
           ||||||||||||||||||||
Sbjct: 773 gcttcatggaacatcttgtc 754
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>ref|XM_325462.1| Neurospora crassa OR74A hypothetical protein (NCU05608.1) partial
           mRNA
          Length = 7530

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 386 gcttcatggaacatcttgtc 405
           ||||||||||||||||||||
Sbjct: 773 gcttcatggaacatcttgtc 754
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>ref|XM_452647.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C10054g predicted mRNA
          Length = 708

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 466 aaatggtgatggtggtggtg 485
           ||||||||||||||||||||
Sbjct: 328 aaatggtgatggtggtggtg 309
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>gb|AC156605.13| Mus musculus chromosome 7, clone RP23-305G5, complete sequence
          Length = 234816

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   aaatggtgatggtggtggtg 485
             ||||||||||||||||||||
Sbjct: 50226 aaatggtgatggtggtggtg 50207
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 468      atggtgatggtggtggtgcg 487
                ||||||||||||||||||||
Sbjct: 22936390 atggtgatggtggtggtgcg 22936371
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>gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, complete sequence
          Length = 170831

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 466    aaatggtgatggtggtggtg 485
              ||||||||||||||||||||
Sbjct: 140476 aaatggtgatggtggtggtg 140495
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>ref|NG_000839.1| Homo sapiens cystatin locus (CST@) on chromosome 20
          Length = 477159

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 466    aaatggtgatggtggtggtg 485
              ||||||||||||||||||||
Sbjct: 132312 aaatggtgatggtggtggtg 132331
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>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete
              sequence
          Length = 184783

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 468    atggtgatggtggtggtgcg 487
              ||||||||||||||||||||
Sbjct: 138920 atggtgatggtggtggtgcg 138901
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>gb|AC141436.17| Medicago truncatula clone mth2-31k19, complete sequence
          Length = 112268

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   gttccatcaccaccacaaca 300
             ||||||||||||||||||||
Sbjct: 18464 gttccatcaccaccacaaca 18483
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>gb|AC139706.8| Medicago truncatula clone mth2-28n21, complete sequence
          Length = 106244

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   gttccatcaccaccacaaca 300
             ||||||||||||||||||||
Sbjct: 87780 gttccatcaccaccacaaca 87761
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>emb|AL591074.10| Human DNA sequence from clone XXyac-60D10 on chromosome 20 Contains the
             CST5 gene for cystatin D, the CST2 gene for cystatin SA,
             the CST1 gene for cystatin SN and the CSTP2 gene for
             cystatin pseudogene 2, complete sequence
          Length = 203076

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   aaatggtgatggtggtggtg 485
             ||||||||||||||||||||
Sbjct: 74400 aaatggtgatggtggtggtg 74381
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>emb|AL354868.10| Human DNA sequence from clone RP11-339A7 on chromosome 6 Contains a
             ribosomal protein L21 (RPL21) pseudogene, complete
             sequence
          Length = 164018

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 376   ggcagccaaagcttcatggaacat 399
             |||||||||||||| |||||||||
Sbjct: 61932 ggcagccaaagcttaatggaacat 61955
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>emb|X69947.1|PHPMADS2 P.hybrida mRNA for pmads 2
          Length = 971

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 taagcatgagaacttgagca 145
           ||||||||||||||||||||
Sbjct: 290 taagcatgagaacttgagca 309
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>emb|X71417.1|PHFBP3 P.hybrida fbp3 mRNA
          Length = 904

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 taagcatgagaacttgagca 145
           ||||||||||||||||||||
Sbjct: 291 taagcatgagaacttgagca 310
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 466    aaatggtgatggtggtggtg 485
              ||||||||||||||||||||
Sbjct: 867766 aaatggtgatggtggtggtg 867785
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>emb|AJ242589.1|PFA242589 Plasmodium falciparum sub-1 gene for subtilisin-like protease PfSUB-1
            and his tag
          Length = 2088

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  aatggtgatggtggtggtgc 486
            ||||||||||||||||||||
Sbjct: 2086 aatggtgatggtggtggtgc 2067
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>emb|AL683843.9| Mouse DNA sequence from clone RP23-217E1 on chromosome 11 Contains part
             of the Ranbp17 gene for RAN binding protein 17, an acidic
             (leucine-rich) nuclear phosphoprotein 32 family, member E
             (Anp32e) pseudogene and a high mobility group box 1
             (Hmgb1) pseudogene, complete sequence
          Length = 198926

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 464   tcaaatggtgatggtggtgg 483
             ||||||||||||||||||||
Sbjct: 23145 tcaaatggtgatggtggtgg 23126
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>gb|BC040984.1| Homo sapiens cDNA clone IMAGE:4801412
          Length = 1785

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 466 aaatggtgatggtggtggtg 485
           ||||||||||||||||||||
Sbjct: 974 aaatggtgatggtggtggtg 993
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>gb|AC092305.2| Homo sapiens chromosome 19 clone LLNLR-229B1, complete sequence
          Length = 35935

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   aaatggtgatggtggtggtg 485
             ||||||||||||||||||||
Sbjct: 21128 aaatggtgatggtggtggtg 21109
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 468      atggtgatggtggtggtgcg 487
                ||||||||||||||||||||
Sbjct: 22929418 atggtgatggtggtggtgcg 22929399
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>gb|AC010606.7| Homo sapiens chromosome 19 clone CTB-25J19, complete sequence
          Length = 105940

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   aaatggtgatggtggtggtg 485
             ||||||||||||||||||||
Sbjct: 30836 aaatggtgatggtggtggtg 30855
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>gb|AC015979.4|AC015979 Homo sapiens BAC clone RP11-538M13 from Y, complete sequence
          Length = 22212

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  aaatggtgatggtggtggtg 485
            ||||||||||||||||||||
Sbjct: 2525 aaatggtgatggtggtggtg 2544
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>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence
          Length = 76158

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 466 aaatggtgatggtggtggtg 485
           ||||||||||||||||||||
Sbjct: 82  aaatggtgatggtggtggtg 63
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>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence
          Length = 171307

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    aaatggtgatggtggtggtg 485
              ||||||||||||||||||||
Sbjct: 126892 aaatggtgatggtggtggtg 126873
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>emb|BX537286.4| Zebrafish DNA sequence from clone DKEY-28J4 in linkage group 4,
             complete sequence
          Length = 179930

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 32    caaaataatgagaaagtgagacta 55
             ||||||||||||||||| ||||||
Sbjct: 24821 caaaataatgagaaagtaagacta 24798
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>emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 in linkage group 7,
            complete sequence
          Length = 145555

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 466  aaatggtgatggtggtggtg 485
            ||||||||||||||||||||
Sbjct: 5419 aaatggtgatggtggtggtg 5438
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>emb|AL683810.10| Mouse DNA sequence from clone RP23-10L18 on chromosome 2, complete
             sequence
          Length = 186882

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   aatggtgatggtggtggtgc 486
             ||||||||||||||||||||
Sbjct: 35839 aatggtgatggtggtggtgc 35820
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>emb|AL671492.12| Mouse DNA sequence from clone RP23-286H11 on chromosome X, complete
              sequence
          Length = 202638

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 468    atggtgatggtggtggtgcg 487
              ||||||||||||||||||||
Sbjct: 126585 atggtgatggtggtggtgcg 126604
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>emb|AL732482.8| Mouse DNA sequence from clone RP23-199C21 on chromosome 4, complete
              sequence
          Length = 191239

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    ccatcacttggaactttctc 210
              ||||||||||||||||||||
Sbjct: 149587 ccatcacttggaactttctc 149606
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>emb|AL732428.7| Mouse DNA sequence from clone RP23-347P2 on chromosome 2, complete
             sequence
          Length = 123627

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 467   aatggtgatggtggtggtgc 486
             ||||||||||||||||||||
Sbjct: 71455 aatggtgatggtggtggtgc 71474


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,607,726
Number of Sequences: 3902068
Number of extensions: 5607726
Number of successful extensions: 132322
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131859
Number of HSP's gapped (non-prelim): 457
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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