ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_195260.1| Oryza sativa (japonica cultivar-group) unknown ... 200 4e-48
2dbj|AK070874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 4e-48
3ref|XM_479647.1| Oryza sativa (japonica cultivar-group), mRNA 184 3e-43
4gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
5gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 135 2e-28
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 123 8e-25
9dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D... 123 8e-25
10gb|AY110989.1| Zea mays CL5869_1 mRNA sequence 86 2e-13
11gb|AY619582.1| Populus deltoides clone RH-Pd-s21 retrotransposon... 44 0.59
12gb|AC104471.6| Homo sapiens 3 BAC RP11-80B17 (Roswell Park Cance... 42 2.3
13gb|AC112932.19| Mus musculus chromosome 3, clone RP24-512D23, co... 42 2.3
14gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
15ref|NG_004620.1| Rattus norvegicus tenascin X pseudogene (Tnx) o... 40 9.2
16gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromoso... 40 9.2
17gb|AC145787.2| Xenopus tropicalis clone CH216-117C14, complete s... 40 9.2
18gb|AC109166.10| Mus musculus chromosome 7, clone RP23-310P1, com... 40 9.2
19gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 9.2
20emb|AL049812.14|HS1121H13 Human DNA sequence from clone RP5-1121... 40 9.2
21emb|BX883044.1| Rattus norvegicus chromosome 20, major histocomp... 40 9.2
22emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on ch... 40 9.2
23gb|AC027449.6| Homo sapiens chromosome 18, clone RP11-535A5, com... 40 9.2
24gb|AC009510.9| Homo sapiens 12p11-37.2-54.4 BAC RP11-1110J8 (Ros... 40 9.2
25gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
26gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
27dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
28gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, comple... 40 9.2
29dbj|AB167808.1| Achaearanea tepidariorum wg mRNA for Wingless, p... 40 9.2
30dbj|AK065753.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
31gb|AY109346.1| Zea mays CL5575_3 mRNA sequence 40 9.2
32gb|AY108765.1| Zea mays PCO088803 mRNA sequence 40 9.2
33emb|Z73898.1|CEZK822 Caenorhabditis elegans Cosmid ZK822, comple... 40 9.2
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
35emb|AL732360.12| Mouse DNA sequence from clone RP23-405B14 on ch... 40 9.2
36gb|AC129323.6| Mus musculus BAC clone RP23-237M15 from 9, comple... 40 9.2
37dbj|AP004608.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.2
38dbj|AP003971.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.2 
>ref|NM_195260.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0079H13.4), mRNA
          Length = 2042

 Score =  200 bits (101), Expect = 4e-48
 Identities = 131/141 (92%)
 Strand = Plus / Minus

                                                                        
Query: 508  atcacttccttgcagcgctccattgcgtccttcgttgtctctgattgttgcaagtagtca 567
            ||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 1592 atcacttccttgcagcgctccatggcatcctccgttgtttctgattgttgcaagtagtca 1533

                                                                        
Query: 568  caaatataggagccagctaaccaaggaatcaggattcttctagggaatgagaaactataa 627
            ||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||| |||
Sbjct: 1532 caaatataggagccagccaaccaaggtatcagaattcttctagggaatgggaaactgtaa 1473

                                 
Query: 628  ggttctctcaactcatgaaaa 648
            ||| |||||||||||||||||
Sbjct: 1472 ggtactctcaactcatgaaaa 1452



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 405  aagctccaggcaccacatcccaaaatgattctag 438
            |||||||||| |||||||||||||| ||| ||||
Sbjct: 1690 aagctccaggtaccacatcccaaaacgatcctag 1657
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>dbj|AK070874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F23, full
            insert sequence
          Length = 1755

 Score =  200 bits (101), Expect = 4e-48
 Identities = 131/141 (92%)
 Strand = Plus / Minus

                                                                        
Query: 508  atcacttccttgcagcgctccattgcgtccttcgttgtctctgattgttgcaagtagtca 567
            ||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 1285 atcacttccttgcagcgctccatggcatcctccgttgtttctgattgttgcaagtagtca 1226

                                                                        
Query: 568  caaatataggagccagctaaccaaggaatcaggattcttctagggaatgagaaactataa 627
            ||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||| |||
Sbjct: 1225 caaatataggagccagccaaccaaggtatcagaattcttctagggaatgggaaactgtaa 1166

                                 
Query: 628  ggttctctcaactcatgaaaa 648
            ||| |||||||||||||||||
Sbjct: 1165 ggtactctcaactcatgaaaa 1145



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 405  aagctccaggcaccacatcccaaaatgattctag 438
            |||||||||| |||||||||||||| ||| ||||
Sbjct: 1383 aagctccaggtaccacatcccaaaacgatcctag 1350
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>ref|XM_479647.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1266

 Score =  184 bits (93), Expect = 3e-43
 Identities = 129/141 (91%)
 Strand = Plus / Minus

                                                                        
Query: 508  atcacttccttgcagcgctccattgcgtccttcgttgtctctgattgttgcaagtagtca 567
            ||||||||||||||||||||||| || |||| | |||| |||||||||||||||||||||
Sbjct: 1001 atcacttccttgcagcgctccatggcatcctccattgtttctgattgttgcaagtagtca 942

                                                                        
Query: 568  caaatataggagccagctaaccaaggaatcaggattcttctagggaatgagaaactataa 627
            ||||||||||||||||| |||||||| ||||| ||||||||||||||||  ||||| |||
Sbjct: 941  caaatataggagccagccaaccaaggtatcagaattcttctagggaatggaaaactgtaa 882

                                 
Query: 628  ggttctctcaactcatgaaaa 648
            ||| |||||||||||||||||
Sbjct: 881  ggtgctctcaactcatgaaaa 861



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 405  aagctccaggcaccacatcccaaaatgattctagtgtcgca 445
            |||||||||| |||||||||||||| ||| |||| ||||||
Sbjct: 1099 aagctccagggaccacatcccaaaacgatcctagcgtcgca 1059
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>gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0079H13 map E60284SA, complete sequence
          Length = 116863

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                         
Query: 540   cgttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcag 599
             |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 28331 cgttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcag 28272

                                                 
Query: 600   gattcttctagggaatgagaaactataaggttctct 635
              |||||||||||||||| |||||| |||||| ||||
Sbjct: 28271 aattcttctagggaatgggaaactgtaaggtactct 28236



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 508   atcacttccttgcagcgctccat 530
             |||||||||||||||||||||||
Sbjct: 28890 atcacttccttgcagcgctccat 28868



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 405   aagctccaggcaccacatcccaaaatgattctag 438
             |||||||||| |||||||||||||| ||| ||||
Sbjct: 28988 aagctccaggtaccacatcccaaaacgatcctag 28955
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12
              map E60284SA, complete sequence
          Length = 139190

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                          
Query: 540    cgttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcag 599
              |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 124086 cgttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcag 124145

                                                  
Query: 600    gattcttctagggaatgagaaactataaggttctct 635
               |||||||||||||||| |||||| |||||| ||||
Sbjct: 124146 aattcttctagggaatgggaaactgtaaggtactct 124181



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 508    atcacttccttgcagcgctccat 530
              |||||||||||||||||||||||
Sbjct: 123527 atcacttccttgcagcgctccat 123549



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 405    aagctccaggcaccacatcccaaaatgattctag 438
              |||||||||| |||||||||||||| ||| ||||
Sbjct: 123429 aagctccaggtaccacatcccaaaacgatcctag 123462
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                           
Query: 540     cgttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcag 599
               |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 5799779 cgttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcag 5799720

                                                   
Query: 600     gattcttctagggaatgagaaactataaggttctct 635
                |||||||||||||||| |||||| |||||| ||||
Sbjct: 5799719 aattcttctagggaatgggaaactgtaaggtactct 5799684



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 508     atcacttccttgcagcgctccat 530
               |||||||||||||||||||||||
Sbjct: 5800338 atcacttccttgcagcgctccat 5800316



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 405     aagctccaggcaccacatcccaaaatgattctag 438
               |||||||||| |||||||||||||| ||| ||||
Sbjct: 5800436 aagctccaggtaccacatcccaaaacgatcctag 5800403
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  135 bits (68), Expect = 2e-28
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                           
Query: 540     cgttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcag 599
               |||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 5800528 cgttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcag 5800469

                                                   
Query: 600     gattcttctagggaatgagaaactataaggttctct 635
                |||||||||||||||| |||||| |||||| ||||
Sbjct: 5800468 aattcttctagggaatgggaaactgtaaggtactct 5800433



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 508     atcacttccttgcagcgctccat 530
               |||||||||||||||||||||||
Sbjct: 5801087 atcacttccttgcagcgctccat 5801065



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 405     aagctccaggcaccacatcccaaaatgattctag 438
               |||||||||| |||||||||||||| ||| ||||
Sbjct: 5801185 aagctccaggtaccacatcccaaaacgatcctag 5801152
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             complete sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 8e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                         
Query: 542   ttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcagga 601
             |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 76901 ttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcagaa 76842

                                               
Query: 602   ttcttctagggaatgagaaactataaggttctct 635
             |||||||||||||||  ||||| |||||| ||||
Sbjct: 76841 ttcttctagggaatggaaaactgtaaggtgctct 76808



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 405   aagctccaggcaccacatcccaaaatgattctagtgtcgca 445
             |||||||||| |||||||||||||| ||| |||| ||||||
Sbjct: 77710 aagctccagggaccacatcccaaaacgatcctagcgtcgca 77670



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 508   atcacttccttgcagcgctccat 530
             |||||||||||||||||||||||
Sbjct: 77612 atcacttccttgcagcgctccat 77590
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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score =  123 bits (62), Expect = 8e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                         
Query: 542   ttgtctctgattgttgcaagtagtcacaaatataggagccagctaaccaaggaatcagga 601
             |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 76901 ttgtttctgattgttgcaagtagtcacaaatataggagccagccaaccaaggtatcagaa 76842

                                               
Query: 602   ttcttctagggaatgagaaactataaggttctct 635
             |||||||||||||||  ||||| |||||| ||||
Sbjct: 76841 ttcttctagggaatggaaaactgtaaggtgctct 76808



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 405   aagctccaggcaccacatcccaaaatgattctagtgtcgca 445
             |||||||||| |||||||||||||| ||| |||| ||||||
Sbjct: 77710 aagctccagggaccacatcccaaaacgatcctagcgtcgca 77670



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 508   atcacttccttgcagcgctccat 530
             |||||||||||||||||||||||
Sbjct: 77612 atcacttccttgcagcgctccat 77590
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>gb|AY110989.1| Zea mays CL5869_1 mRNA sequence
          Length = 917

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 118/142 (83%), Gaps = 2/142 (1%)
 Strand = Plus / Minus

                                                                       
Query: 507 tatcacttccttgcagcgctccattgcgtccttcgttgtctctgattgttgcaagtagtc 566
           ||||||||||||| |||| |||| ||| ||||  | |||||||| |||||||||||| ||
Sbjct: 427 tatcacttccttgaagcgatccactgcatcctctgctgtctctggttgttgcaagtaatc 368

                                                                       
Query: 567 acaaatataggagccagct-aaccaaggaatcaggattcttctagggaatgagaaactat 625
           ||||| ||||| ||| ||| | |||||| |||||||  ||||| |||||||     || |
Sbjct: 367 acaaacataggtgcc-gctcagccaaggtatcaggacccttctcgggaatgnnnnnctgt 309

                                 
Query: 626 aaggttctctcaactcatgaaa 647
           ||||||||||||||||||||||
Sbjct: 308 aaggttctctcaactcatgaaa 287



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 409 tccaggcaccacatcccaaaatgattctagt 439
           ||||||||||| ||||||||| |||||||||
Sbjct: 529 tccaggcaccatatcccaaaaggattctagt 499
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>gb|AY619582.1| Populus deltoides clone RH-Pd-s21 retrotransposon Copia RnaseH
           (RnaseH) gene, partial cds
          Length = 392

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 27  gcctaccagaaaatgaaaacga 48
           ||||||||||||||||||||||
Sbjct: 126 gcctaccagaaaatgaaaacga 105
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>gb|AC104471.6| Homo sapiens 3 BAC RP11-80B17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160698

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   caaactgttcattgtgaaaga 157
             |||||||||||||||||||||
Sbjct: 36803 caaactgttcattgtgaaaga 36823
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>gb|AC112932.19| Mus musculus chromosome 3, clone RP24-512D23, complete sequence
          Length = 171097

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   aggtttggacaaaatgtaaga 208
             |||||||||||||||||||||
Sbjct: 48686 aggtttggacaaaatgtaaga 48706
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>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0542B04,
              complete sequence
          Length = 182823

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    aacatagcaagaattactct 235
              ||||||||||||||||||||
Sbjct: 149343 aacatagcaagaattactct 149362
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>ref|NG_004620.1| Rattus norvegicus tenascin X pseudogene (Tnx) on chromosome 20
          Length = 44507

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tcatgttcatgtatgtgcag 130
             ||||||||||||||||||||
Sbjct: 19747 tcatgttcatgtatgtgcag 19728
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>gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromosome 7, complete
             sequence
          Length = 199758

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 578   agccagctaaccaaggaatc 597
             ||||||||||||||||||||
Sbjct: 62110 agccagctaaccaaggaatc 62091
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>gb|AC145787.2| Xenopus tropicalis clone CH216-117C14, complete sequence
          Length = 150045

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ctggttcaacaatggaagga 482
              ||||||||||||||||||||
Sbjct: 139040 ctggttcaacaatggaagga 139021
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>gb|AC109166.10| Mus musculus chromosome 7, clone RP23-310P1, complete sequence
          Length = 168878

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   tgtgctctccctgaacacat 351
             ||||||||||||||||||||
Sbjct: 38424 tgtgctctccctgaacacat 38405
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 288     ccaggagcacaaacaaggca 307
               ||||||||||||||||||||
Sbjct: 4119368 ccaggagcacaaacaaggca 4119387
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>emb|AL049812.14|HS1121H13 Human DNA sequence from clone RP5-1121H13 on chromosome 20q12 Contains
             a neurofilament heavy polypeptide 200kDa (NEFH)
             pseudogene, the 3' end of the PTPRT gene for protein
             tyrosine phosphatase receptor type T and a CpG island,
             complete sequence
          Length = 105946

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    aaatacttggtgagcctacc 33
             ||||||||||||||||||||
Sbjct: 88497 aaatacttggtgagcctacc 88478
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>emb|BX883044.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 3/11
          Length = 340493

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tcatgttcatgtatgtgcag 130
              ||||||||||||||||||||
Sbjct: 304017 tcatgttcatgtatgtgcag 303998
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>emb|AL662930.29| Mouse DNA sequence from clone RP23-212B18 on chromosome 11 Contains
             part of the gene for a novel protein (likely ortholog to
             homo sapiens FLJ38335), complete sequence
          Length = 198148

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 494   ctgtttccagtgatatcact 513
             ||||||||||||||||||||
Sbjct: 45382 ctgtttccagtgatatcact 45363
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>gb|AC027449.6| Homo sapiens chromosome 18, clone RP11-535A5, complete sequence
          Length = 149660

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  aagctccaggcaccacatcc 424
            ||||||||||||||||||||
Sbjct: 5249 aagctccaggcaccacatcc 5268
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>gb|AC009510.9| Homo sapiens 12p11-37.2-54.4 BAC RP11-1110J8 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 145859

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   acaaactgttcattgtgaaa 155
             ||||||||||||||||||||
Sbjct: 15665 acaaactgttcattgtgaaa 15646
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>gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09,
              complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    aacatagcaagaattactct 235
              ||||||||||||||||||||
Sbjct: 131372 aacatagcaagaattactct 131353
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>gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09,
              complete sequence
          Length = 143533

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    aacatagcaagaattactct 235
              ||||||||||||||||||||
Sbjct: 131372 aacatagcaagaattactct 131353
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 216      aacatagcaagaattactct 235
                ||||||||||||||||||||
Sbjct: 20304830 aacatagcaagaattactct 20304849
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>gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, complete sequence
          Length = 132644

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   caaaatgtaagatacacaaa 216
             ||||||||||||||||||||
Sbjct: 39737 caaaatgtaagatacacaaa 39718
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>dbj|AB167808.1| Achaearanea tepidariorum wg mRNA for Wingless, partial cds
          Length = 1265

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 tgcagcacctacaaactgtt 145
           ||||||||||||||||||||
Sbjct: 492 tgcagcacctacaaactgtt 473
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>dbj|AK065753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036G07, full
            insert sequence
          Length = 2214

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  aacatagcaagaattactct 235
            ||||||||||||||||||||
Sbjct: 2015 aacatagcaagaattactct 2034
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>gb|AY109346.1| Zea mays CL5575_3 mRNA sequence
          Length = 1305

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 403 ggaagctccaggcaccacat 422
           ||||||||||||||||||||
Sbjct: 679 ggaagctccaggcaccacat 660
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>gb|AY108765.1| Zea mays PCO088803 mRNA sequence
          Length = 704

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 512 cttccttgcagcgctccatt 531
           ||||||||||||||||||||
Sbjct: 195 cttccttgcagcgctccatt 176
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>emb|Z73898.1|CEZK822 Caenorhabditis elegans Cosmid ZK822, complete sequence
          Length = 25970

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  agaaactctacacttttcac 174
            ||||||||||||||||||||
Sbjct: 7530 agaaactctacacttttcac 7511
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 216      aacatagcaagaattactct 235
                ||||||||||||||||||||
Sbjct: 20615069 aacatagcaagaattactct 20615088
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>emb|AL732360.12| Mouse DNA sequence from clone RP23-405B14 on chromosome X, complete
              sequence
          Length = 197398

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    aagatacacaaaacatagca 224
              ||||||||||||||||||||
Sbjct: 175777 aagatacacaaaacatagca 175796
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>gb|AC129323.6| Mus musculus BAC clone RP23-237M15 from 9, complete sequence
          Length = 170293

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 613    aatgagaaactataaggttc 632
              ||||||||||||||||||||
Sbjct: 128058 aatgagaaactataaggttc 128077
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>dbj|AP004608.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-627G23, complete
             sequences
          Length = 65900

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   ttctccacttctgtttccag 503
             ||||||||||||||||||||
Sbjct: 25732 ttctccacttctgtttccag 25713
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>dbj|AP003971.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-850O8, complete
              sequence
          Length = 147440

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 484    ttctccacttctgtttccag 503
              ||||||||||||||||||||
Sbjct: 142132 ttctccacttctgtttccag 142113


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,530,367
Number of Sequences: 3902068
Number of extensions: 6530367
Number of successful extensions: 126014
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125786
Number of HSP's gapped (non-prelim): 227
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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