ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6o18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ORYA_ORYSA (P25776) Oryzain alpha chain precursor (EC 3.4.22.-) 31 2.5
2Y449_MYCGE (P47687) Hypothetical protein MG449 30 5.5
3CDK2_MOUSE (P97377) Cell division protein kinase 2 (EC 2.7.11.22) 29 9.4

>ORYA_ORYSA (P25776) Oryzain alpha chain precursor (EC 3.4.22.-)|
          Length = 458

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 474 CNVYEYSDGCYTWKTEVLICSDLTIMACCHDH 569
           C +YEY   CY W      C  L    CC DH
Sbjct: 380 CCIYEYGKYCYAWG-----CCPLEGATCCDDH 406



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>Y449_MYCGE (P47687) Hypothetical protein MG449|
          Length = 228

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 351 MLVEDSEI-LKQAHQGATSVNPSMLCNSPVISIYVHK 458
           ML  + E+ LKQ ++G   +NP +    P I +Y++K
Sbjct: 177 MLCSEKELNLKQKNEGIIEINPKIKVGKPFIDVYLNK 213



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>CDK2_MOUSE (P97377) Cell division protein kinase 2 (EC 2.7.11.22)|
          Length = 346

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
 Frame = +3

Query: 252 SNQLTGVTLGLHFHVQFRVNE----CHTES---K*LRPDNMLVEDSEILKQAHQGATSVN 410
           ++ LTG+ L L     F++ +    CH+     + L+P N+L+     +K A  G     
Sbjct: 93  ASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEGSIKLADFGLARAF 152

Query: 411 PSMLCNSPVISIYVHKTIVLQCNVYEYSDGCYTWKTEVLICSDLTIMA------------ 554
                    +  Y H+ + L     E   GC  + T V I S   I A            
Sbjct: 153 ------GVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMHLVCTQHHAK 206

Query: 555 CCHDHQAPGRRT 590
           CC +H+  GR +
Sbjct: 207 CCGEHRRNGRHS 218


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,472,852
Number of Sequences: 219361
Number of extensions: 1594230
Number of successful extensions: 3267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3267
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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