ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7d17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468265.1| Oryza sativa (japonica cultivar-group), mRNA 141 3e-30
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
3dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
4dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
5gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 2.1
6gb|AC122807.3| Mus musculus BAC clone RP23-297H3 from 8, complet... 42 2.1
7gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, co... 42 2.1
8gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, co... 42 2.1
9gb|AC104140.5| Drosophila melanogaster X BAC RP98-9H13 (Roswell ... 42 2.1
10gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell ... 42 2.1
11ref|NM_133034.3| Drosophila melanogaster CG6867-RA (CG6867), mRNA 42 2.1
12gb|AC012163.13|AC012163 Drosophila melanogaster, chromosome X, r... 42 2.1
13gb|AC009229.5| Homo sapiens BAC clone RP11-314C9 from 2, complet... 42 2.1
14gb|AE003507.3| Drosophila melanogaster chromosome X, section 59 ... 42 2.1
15gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 o... 42 2.1
16gb|BT001692.1| Drosophila melanogaster RE59052 full insert cDNA 42 2.1
17emb|CT009765.9| Mouse DNA sequence from clone RP23-235B7 on chro... 42 2.1
18emb|AL024485.1|DMC155E2 Drosophila melanogaster cosmid clone 155E2 42 2.1
19ref|NM_183685.1| Oryza sativa (japonica cultivar-group), predic... 40 8.3
20ref|XM_384100.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 8.3
21gb|AC126550.3| Mus musculus BAC clone RP24-405L5 from chromosome... 40 8.3
22emb|AL591031.3| Human DNA sequence from clone RP11-151D14 on chr... 40 8.3
23emb|AL365185.11| Human DNA sequence from clone RP11-416C17 on ch... 40 8.3
24gb|AC183543.3| Pan troglodytes BAC clone CH251-299H22 from chrom... 40 8.3
25emb|X17692.1|NCCYCGEN Neurospora crassa cyclophilin gene 40 8.3
26emb|AL596173.1| Listeria innocua Clip11262 complete genome, segm... 40 8.3
27gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 40 8.3
28dbj|AP004253.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
29gb|AC016962.38| Homo sapiens 3 BAC RP11-569H14 (Roswell Park Can... 40 8.3
30gb|AC009986.10| Homo sapiens chromosome 10 clone RP11-346D6, com... 40 8.3
31gb|AC090236.4| Homo sapiens chromosome 18, clone RP11-845C23, co... 40 8.3
32gb|AC092349.3| Homo sapiens chromosome 5 clone RP11-287J9, compl... 40 8.3
33emb|AL954812.14| Zebrafish DNA sequence from clone DKEY-50G15, c... 40 8.3
34gb|AC004886.1| Homo sapiens PAC clone RP4-784G16 from 7, complet... 40 8.3
35gb|AC073528.26|AC073528 Homo sapiens 12 BAC RP11-8P16 (Roswell P... 40 8.3
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
37dbj|AP007204.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
38gb|AC011331.2|AC011331 Homo sapiens chromosome 18 clone H_NH0514... 40 8.3
39dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
40dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
41emb|BX648667.1|HSM808818 Homo sapiens mRNA; cDNA DKFZp686E0245 (... 40 8.3
42dbj|AB061251.1| Solanum tuberosum mRNA for NAD(P)H:quinone oxido... 40 8.3
43gb|AC102576.7| Mus musculus chromosome 18, clone RP23-243N2, com... 40 8.3
44emb|BX248320.3| Zebrafish DNA sequence from clone CH211-146A1 in... 40 8.3
45gb|AC154178.1| Mus musculus BAC clone RP23-465N18 from 17, compl... 40 8.3 
>ref|XM_468265.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1554

 Score =  141 bits (71), Expect = 3e-30
 Identities = 220/269 (81%), Gaps = 3/269 (1%)
 Strand = Plus / Minus

                                                                        
Query: 332  gtgaagtctatcttgctagcacgtatgatcaagtggtccatttcttcatccataactatg 391
            |||| |||||||||||| |||||||||||||| |||||||||||||| |||||| |||| 
Sbjct: 1550 gtgatgtctatcttgctggcacgtatgatcaattggtccatttcttcgtccatatctatt 1491

                                                                        
Query: 392  tcatctcttgctatcatctcggaaatgtttgttggcagcatggtgtcagctttaatatat 451
            | ||||| |||||||||||  | ||| |||  |||||  |   ||||||| |||||||||
Sbjct: 1490 tgatctcctgctatcatctgaggaatattttgtggcacaa---tgtcagcattaatatat 1434

                                                                        
Query: 452  gctcgaagcacggacttgtacaagggcaagcttgtcaggttaaacttttgaagaacctta 511
            || | |||||  |||||||||| |||||||||||||| ||| ||||||||||||||||| 
Sbjct: 1433 gccccaagcaatgacttgtacaggggcaagcttgtcaagttgaacttttgaagaaccttt 1374

                                                                        
Query: 512  atgtacctgttagcatcatccgtatttccttgctcctcgaagaacgttgcgatggcctca 571
            ||| | || |  ||||| |||  | | ||||||||||||||  || |||| |||||||| 
Sbjct: 1373 atgaatctatctgcatcctccacactgccttgctcctcgaaatactttgcaatggcctcc 1314

                                         
Query: 572  accagtctgagtggaggtctccaatggca 600
            | |||    |||||||||||||| |||||
Sbjct: 1313 aacagctcaagtggaggtctccagtggca 1285
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 3e-30
 Identities = 220/269 (81%), Gaps = 3/269 (1%)
 Strand = Plus / Plus

                                                                            
Query: 332      gtgaagtctatcttgctagcacgtatgatcaagtggtccatttcttcatccataactatg 391
                |||| |||||||||||| |||||||||||||| |||||||||||||| |||||| |||| 
Sbjct: 33876065 gtgatgtctatcttgctggcacgtatgatcaattggtccatttcttcgtccatatctatt 33876124

                                                                            
Query: 392      tcatctcttgctatcatctcggaaatgtttgttggcagcatggtgtcagctttaatatat 451
                | ||||| |||||||||||  | ||| |||  |||||  |   ||||||| |||||||||
Sbjct: 33876125 tgatctcctgctatcatctgaggaatattttgtggcacaa---tgtcagcattaatatat 33876181

                                                                            
Query: 452      gctcgaagcacggacttgtacaagggcaagcttgtcaggttaaacttttgaagaacctta 511
                || | |||||  |||||||||| |||||||||||||| ||| ||||||||||||||||| 
Sbjct: 33876182 gccccaagcaatgacttgtacaggggcaagcttgtcaagttgaacttttgaagaaccttt 33876241

                                                                            
Query: 512      atgtacctgttagcatcatccgtatttccttgctcctcgaagaacgttgcgatggcctca 571
                ||| | || |  ||||| |||  | | ||||||||||||||  || |||| |||||||| 
Sbjct: 33876242 atgaatctatctgcatcctccacactgccttgctcctcgaaatactttgcaatggcctcc 33876301

                                             
Query: 572      accagtctgagtggaggtctccaatggca 600
                | |||    |||||||||||||| |||||
Sbjct: 33876302 aacagctcaagtggaggtctccagtggca 33876330
to top
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1695_H09
          Length = 114721

 Score =  141 bits (71), Expect = 3e-30
 Identities = 220/269 (81%), Gaps = 3/269 (1%)
 Strand = Plus / Plus

                                                                         
Query: 332   gtgaagtctatcttgctagcacgtatgatcaagtggtccatttcttcatccataactatg 391
             |||| |||||||||||| |||||||||||||| |||||||||||||| |||||| |||| 
Sbjct: 92643 gtgatgtctatcttgctggcacgtatgatcaattggtccatttcttcgtccatatctatt 92702

                                                                         
Query: 392   tcatctcttgctatcatctcggaaatgtttgttggcagcatggtgtcagctttaatatat 451
             | ||||| |||||||||||  | ||| |||  |||||  |   ||||||| |||||||||
Sbjct: 92703 tgatctcctgctatcatctgaggaatattttgtggcacaa---tgtcagcattaatatat 92759

                                                                         
Query: 452   gctcgaagcacggacttgtacaagggcaagcttgtcaggttaaacttttgaagaacctta 511
             || | |||||  |||||||||| |||||||||||||| ||| ||||||||||||||||| 
Sbjct: 92760 gccccaagcaatgacttgtacaggggcaagcttgtcaagttgaacttttgaagaaccttt 92819

                                                                         
Query: 512   atgtacctgttagcatcatccgtatttccttgctcctcgaagaacgttgcgatggcctca 571
             ||| | || |  ||||| |||  | | ||||||||||||||  || |||| |||||||| 
Sbjct: 92820 atgaatctatctgcatcctccacactgccttgctcctcgaaatactttgcaatggcctcc 92879

                                          
Query: 572   accagtctgagtggaggtctccaatggca 600
             | |||    |||||||||||||| |||||
Sbjct: 92880 aacagctcaagtggaggtctccagtggca 92908
to top
>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_E04
          Length = 133621

 Score =  141 bits (71), Expect = 3e-30
 Identities = 220/269 (81%), Gaps = 3/269 (1%)
 Strand = Plus / Plus

                                                                         
Query: 332   gtgaagtctatcttgctagcacgtatgatcaagtggtccatttcttcatccataactatg 391
             |||| |||||||||||| |||||||||||||| |||||||||||||| |||||| |||| 
Sbjct: 35028 gtgatgtctatcttgctggcacgtatgatcaattggtccatttcttcgtccatatctatt 35087

                                                                         
Query: 392   tcatctcttgctatcatctcggaaatgtttgttggcagcatggtgtcagctttaatatat 451
             | ||||| |||||||||||  | ||| |||  |||||  |   ||||||| |||||||||
Sbjct: 35088 tgatctcctgctatcatctgaggaatattttgtggcacaa---tgtcagcattaatatat 35144

                                                                         
Query: 452   gctcgaagcacggacttgtacaagggcaagcttgtcaggttaaacttttgaagaacctta 511
             || | |||||  |||||||||| |||||||||||||| ||| ||||||||||||||||| 
Sbjct: 35145 gccccaagcaatgacttgtacaggggcaagcttgtcaagttgaacttttgaagaaccttt 35204

                                                                         
Query: 512   atgtacctgttagcatcatccgtatttccttgctcctcgaagaacgttgcgatggcctca 571
             ||| | || |  ||||| |||  | | ||||||||||||||  || |||| |||||||| 
Sbjct: 35205 atgaatctatctgcatcctccacactgccttgctcctcgaaatactttgcaatggcctcc 35264

                                          
Query: 572   accagtctgagtggaggtctccaatggca 600
             | |||    |||||||||||||| |||||
Sbjct: 35265 aacagctcaagtggaggtctccagtggca 35293
to top
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 431     atggtgtcagctttaatatat 451
               |||||||||||||||||||||
Sbjct: 1513398 atggtgtcagctttaatatat 1513378
to top
>gb|AC122807.3| Mus musculus BAC clone RP23-297H3 from 8, complete sequence
          Length = 210372

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 91   ttgtctacatacatacaacaa 111
            |||||||||||||||||||||
Sbjct: 9871 ttgtctacatacatacaacaa 9891
to top
>gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, complete sequence
          Length = 246921

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 150    aagaaacaattacttcacaaa 170
              |||||||||||||||||||||
Sbjct: 194882 aagaaacaattacttcacaaa 194902
to top
>gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, complete sequence
          Length = 215975

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   tgcagctctgctttgccacgt 264
             |||||||||||||||||||||
Sbjct: 17643 tgcagctctgctttgccacgt 17663
to top
>gb|AC104140.5| Drosophila melanogaster X BAC RP98-9H13 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 191342

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 493    aaacttttgaagaaccttaat 513
              |||||||||||||||||||||
Sbjct: 187527 aaacttttgaagaaccttaat 187507
to top
>gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 161569

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 493   aaacttttgaagaaccttaat 513
             |||||||||||||||||||||
Sbjct: 22674 aaacttttgaagaaccttaat 22654
to top
>ref|NM_133034.3| Drosophila melanogaster CG6867-RA (CG6867), mRNA
          Length = 3204

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 463  ggacttgtacaagggcaagct 483
            |||||||||||||||||||||
Sbjct: 2916 ggacttgtacaagggcaagct 2936
to top
>gb|AC012163.13|AC012163 Drosophila melanogaster, chromosome X, region 16F-16F, BAC clone
              BACR17D02, complete sequence
          Length = 186748

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 463    ggacttgtacaagggcaagct 483
              |||||||||||||||||||||
Sbjct: 120092 ggacttgtacaagggcaagct 120112
to top
>gb|AC009229.5| Homo sapiens BAC clone RP11-314C9 from 2, complete sequence
          Length = 209156

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 276   ctatttaccatgtgactggtt 296
             |||||||||||||||||||||
Sbjct: 69643 ctatttaccatgtgactggtt 69663
to top
>gb|AE003507.3| Drosophila melanogaster chromosome X, section 59 of 74 of the complete
              sequence
          Length = 299804

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 463    ggacttgtacaagggcaagct 483
              |||||||||||||||||||||
Sbjct: 175265 ggacttgtacaagggcaagct 175285
to top
>gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 of 74 of the complete
             sequence
          Length = 309053

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 493   aaacttttgaagaaccttaat 513
             |||||||||||||||||||||
Sbjct: 49278 aaacttttgaagaaccttaat 49258
to top
>gb|BT001692.1| Drosophila melanogaster RE59052 full insert cDNA
          Length = 3211

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 463  ggacttgtacaagggcaagct 483
            |||||||||||||||||||||
Sbjct: 2916 ggacttgtacaagggcaagct 2936
to top
>emb|CT009765.9| Mouse DNA sequence from clone RP23-235B7 on chromosome 12, complete
             sequence
          Length = 197822

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 117   ctccacaataaaagcatataa 137
             |||||||||||||||||||||
Sbjct: 99420 ctccacaataaaagcatataa 99400
to top
>emb|AL024485.1|DMC155E2 Drosophila melanogaster cosmid clone 155E2
          Length = 31180

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 493   aaacttttgaagaaccttaat 513
             |||||||||||||||||||||
Sbjct: 20312 aaacttttgaagaaccttaat 20292
to top
>ref|NM_183685.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 714

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 99  atacatacaacaataatcctccac 122
           ||||||||||||| ||||||||||
Sbjct: 149 atacatacaacaacaatcctccac 172
to top
>ref|XM_384100.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03924.1)
           partial mRNA
          Length = 1701

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 578 ctgagtggaggtctccaatg 597
           ||||||||||||||||||||
Sbjct: 760 ctgagtggaggtctccaatg 741
to top
>gb|AC126550.3| Mus musculus BAC clone RP24-405L5 from chromosome 17, complete sequence
          Length = 171820

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    ttaaccttgccttctgaata 203
              ||||||||||||||||||||
Sbjct: 159208 ttaaccttgccttctgaata 159227
to top
>emb|AL591031.3| Human DNA sequence from clone RP11-151D14 on chromosome 9q13-21.2
              Contains a novel gene and the ALDH1A1 gene for aldehyde
              dehydrogenase 1 family member A1, complete sequence
          Length = 136895

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    caataaaagcatataatcat 141
              ||||||||||||||||||||
Sbjct: 122386 caataaaagcatataatcat 122405
to top
>emb|AL365185.11| Human DNA sequence from clone RP11-416C17 on chromosome 10 Contains
             part of gene FLJ11218, complete sequence
          Length = 150635

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 110   aataatcctccacaataaaagcatataa 137
             |||||||||  |||||||||||||||||
Sbjct: 14604 aataatcctgaacaataaaagcatataa 14577
to top
>gb|AC183543.3| Pan troglodytes BAC clone CH251-299H22 from chromosome 11, complete
             sequence
          Length = 195721

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    attccccaggattgtctacataca 103
             ||||||||||||| ||||||||||
Sbjct: 28988 attccccaggattttctacataca 28965
to top
>emb|X17692.1|NCCYCGEN Neurospora crassa cyclophilin gene
          Length = 2719

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  caaattaaccttgccttctg 199
            ||||||||||||||||||||
Sbjct: 2673 caaattaaccttgccttctg 2692
to top
>emb|AL596173.1| Listeria innocua Clip11262 complete genome, segment 11/12
          Length = 305050

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   aattaaccttgccttctgaa 201
             ||||||||||||||||||||
Sbjct: 73975 aattaaccttgccttctgaa 73994
to top
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 154    aacaattacttcacaaagcaaagc 177
              ||||||| ||||||||||||||||
Sbjct: 238112 aacaattccttcacaaagcaaagc 238135
to top
>dbj|AP004253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1116_C07
          Length = 108208

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    atacatacaacaataatcctccac 122
             ||||||||||||| ||||||||||
Sbjct: 79882 atacatacaacaacaatcctccac 79905
to top
>gb|AC016962.38| Homo sapiens 3 BAC RP11-569H14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 49548

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ctataaagctataagaacca 42
             ||||||||||||||||||||
Sbjct: 36573 ctataaagctataagaacca 36554
to top
>gb|AC009986.10| Homo sapiens chromosome 10 clone RP11-346D6, complete sequence
          Length = 181733

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    tctgaataacgaaatgttgt 215
              ||||||||||||||||||||
Sbjct: 158884 tctgaataacgaaatgttgt 158865
to top
>gb|AC090236.4| Homo sapiens chromosome 18, clone RP11-845C23, complete sequence
          Length = 170676

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   ttttgtcatgtgatgttctc 234
             ||||||||||||||||||||
Sbjct: 84363 ttttgtcatgtgatgttctc 84382
to top
>gb|AC092349.3| Homo sapiens chromosome 5 clone RP11-287J9, complete sequence
          Length = 144155

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    atttaccatgtgactggttc 297
              ||||||||||||||||||||
Sbjct: 107989 atttaccatgtgactggttc 107970
to top
>emb|AL954812.14| Zebrafish DNA sequence from clone DKEY-50G15, complete sequence
          Length = 192304

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     tacatacatacaacaataat 115
              ||||||||||||||||||||
Sbjct: 161036 tacatacatacaacaataat 161017
to top
>gb|AC004886.1| Homo sapiens PAC clone RP4-784G16 from 7, complete sequence
          Length = 143364

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 153  aaacaattacttcacaaagcaaag 176
            |||||||||||| |||||||||||
Sbjct: 5864 aaacaattacttaacaaagcaaag 5887
to top
>gb|AC073528.26|AC073528 Homo sapiens 12 BAC RP11-8P16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167041

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    tcttatagaagtatgaagca 73
             ||||||||||||||||||||
Sbjct: 69942 tcttatagaagtatgaagca 69923
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 271      aaatgctatttaccatgtga 290
                ||||||||||||||||||||
Sbjct: 39842314 aaatgctatttaccatgtga 39842333



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 99       atacatacaacaataatcctccac 122
                ||||||||||||| ||||||||||
Sbjct: 11626086 atacatacaacaacaatcctccac 11626109
to top
>dbj|AP007204.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0008D05
          Length = 134776

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     atacatacaacaataatcctccac 122
              ||||||||||||| ||||||||||
Sbjct: 133093 atacatacaacaacaatcctccac 133116
to top
>gb|AC011331.2|AC011331 Homo sapiens chromosome 18 clone H_NH0514011, complete sequence
          Length = 173653

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ttttgtcatgtgatgttctc 234
             ||||||||||||||||||||
Sbjct: 99467 ttttgtcatgtgatgttctc 99448
to top
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004D12
          Length = 138136

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   aaatgctatttaccatgtga 290
             ||||||||||||||||||||
Sbjct: 23022 aaatgctatttaccatgtga 23041
to top
>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0551A11
          Length = 132384

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    atacatacaacaataatcctccac 122
             ||||||||||||| ||||||||||
Sbjct: 65210 atacatacaacaacaatcctccac 65233
to top
>emb|BX648667.1|HSM808818 Homo sapiens mRNA; cDNA DKFZp686E0245 (from clone DKFZp686E0245)
          Length = 7916

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  aaatgttgttttgtcatgtg 226
            ||||||||||||||||||||
Sbjct: 6696 aaatgttgttttgtcatgtg 6677
to top
>dbj|AB061251.1| Solanum tuberosum mRNA for NAD(P)H:quinone oxidoreductase, complete
           cds
          Length = 912

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 gtggtccatttcttcatcca 383
           ||||||||||||||||||||
Sbjct: 640 gtggtccatttcttcatcca 659
to top
>gb|AC102576.7| Mus musculus chromosome 18, clone RP23-243N2, complete sequence
          Length = 162186

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     tacatacatacaacaataat 115
              ||||||||||||||||||||
Sbjct: 117234 tacatacatacaacaataat 117253
to top
>emb|BX248320.3| Zebrafish DNA sequence from clone CH211-146A1 in linkage group 18,
             complete sequence
          Length = 54960

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   taaccttgccttctgaataa 204
             ||||||||||||||||||||
Sbjct: 26108 taaccttgccttctgaataa 26127
to top
>gb|AC154178.1| Mus musculus BAC clone RP23-465N18 from 17, complete sequence
          Length = 191399

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   ttaaccttgccttctgaata 203
             ||||||||||||||||||||
Sbjct: 24205 ttaaccttgccttctgaata 24224


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,004,088
Number of Sequences: 3902068
Number of extensions: 6004088
Number of successful extensions: 111551
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111360
Number of HSP's gapped (non-prelim): 187
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top