ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7d13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473385.1| Oryza sativa (japonica cultivar-group), predic... 476 e-131
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 476 e-131
3emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4,... 476 e-131
4gb|BC079756.1| Xenopus laevis MGC84791 protein, mRNA (cDNA clone... 44 0.60
5emb|CT009512.6| Mouse DNA sequence from clone RP23-94B13 on chro... 44 0.60
6ref|XM_744614.1| Aspergillus fumigatus Af293 mRNA capping enzyme... 42 2.4
7ref|NM_205056.1| Gallus gallus hydroxyacyl-Coenzyme A dehydrogen... 42 2.4
8emb|BX276128.8| Zebrafish DNA sequence from clone CH211-215C18 i... 42 2.4
9gb|U83249.1|GGU83249 Gallus gallus CFR-associated protein p70 mR... 42 2.4
10ref|XM_467464.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.3
11emb|CR786566.25| Zebrafish DNA sequence from clone DKEYP-2E4 in ... 40 9.3
12gb|AC113554.9| Homo sapiens chromosome 17, clone CTD-2501B8, com... 40 9.3
13emb|BX005305.21| Zebrafish DNA sequence from clone DKEY-29C11 in... 40 9.3
14emb|AL158073.10| Human DNA sequence from clone RP11-323A7 on chr... 40 9.3
15emb|AL157707.12| Human DNA sequence from clone RP11-157F10 on ch... 40 9.3
16gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Ca... 40 9.3
17emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on ch... 40 9.3
18emb|CR391919.5| Zebrafish DNA sequence from clone DKEY-174K18 in... 40 9.3
19emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 12... 40 9.3
20gb|AC025175.4| Homo sapiens chromosome 5 clone CTD-2081C10, comp... 40 9.3
21gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold 40 9.3
22gb|AC164543.1| Monodelphis domestica, clone XX-2262O1, complete ... 40 9.3
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
24gb|AC154704.2| Mus musculus BAC clone RP24-349I24 from chromosom... 40 9.3
25dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
26dbj|AK070855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.3
27gb|AC150679.4| Monodelphis domestica, clone XX-20E6, complete se... 40 9.3
28emb|AL049871.4|CNS0000U Human chromosome 14 DNA sequence BAC R-6... 40 9.3
29gb|AC104197.14| Mus musculus chromosome 8, clone RP24-319N16, co... 40 9.3
30gb|AC115820.11| Mus musculus chromosome 8, clone RP23-479K9, com... 40 9.3
31gb|AC139320.4| Mus musculus BAC clone RP24-410G8 from 9, complet... 40 9.3
32gb|AC112263.4| Mus musculus BAC clone RP23-403P24 from 5, comple... 40 9.3
33gb|AC000114.1|HSAC000114 Human PAC clone DJ527C21 from Xq23, com... 40 9.3 
>ref|XM_473385.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1536

 Score =  476 bits (240), Expect = e-131
 Identities = 435/500 (87%)
 Strand = Plus / Minus

                                                                        
Query: 181  atcaaggacttgtactcttcgttctcagcacaccctctacttctgagtacactcattaac 240
            ||||| |||||||||||||| |||||  | |||| ||||||||| |||||| |||| |||
Sbjct: 1508 atcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaac 1449

                                                                        
Query: 241  ctgtcgacactctccgtgtcattcttctccttgaaatatgccaggagagtctcaacattg 300
            |||||  | || || |  || || |||||||||||||  || |||||  |||||||||||
Sbjct: 1448 ctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattg 1389

                                                                        
Query: 301  gttggtcttggtctccatttacttgcacttttaactgctgtggctttctccaaacatgac 360
            || ||||||||||||||||| |||| ||||  |||||| |||||||||||||||||||||
Sbjct: 1388 gtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgac 1329

                                                                        
Query: 361  agagcttctgataattggttatccttcaggtacgccgtggcaaggatttcccaggtgttt 420
            || ||||| ||| ||||    ||||||||||| || ||| ||||||||||||||||||||
Sbjct: 1328 agtgcttcagatgattgaccgtccttcaggtatgctgtgccaaggatttcccaggtgttt 1269

                                                                        
Query: 421  ggtttggggttcccacctttctcaacaaatctgttcagagtttgctgagccttcacgaca 480
            ||||| || || |||||||||||||||||||||||||||||||||| ||||||    |||
Sbjct: 1268 ggttttggatttccacctttctcaacaaatctgttcagagtttgctcagccttggtaaca 1209

                                                                        
Query: 481  aagccttctctagaataccatgctaataaaatgttcatggtcttaggatcgaaactagaa 540
            ||||||||||| | |||||| ||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 1208 aagccttctctggcataccacgctaataaaatgttcatagtcttaggatcaaaactggaa 1149

                                                                        
Query: 541  cttttggatgcccattcttcgtatagaagttcagctccctctatatcccctagcctaaca 600
            || |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 1148 ctcttggatgcccattcctcgtaaagaagttcagctccctcaatatctcctagcctaaca 1089

                                                                        
Query: 601  agggcagacaatacctcctggtaacccagattatgaattgtcttgaaagttgctttgtac 660
            |||||||| | |||||||||||||||||| |||||||||||   ||||||||||||||||
Sbjct: 1088 agggcagatagtacctcctggtaacccaggttatgaattgtggggaaagttgctttgtac 1029

                                
Query: 661  caattccaaatgcggtagac 680
            |||||||||| |||||||||
Sbjct: 1028 caattccaaacgcggtagac 1009
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  476 bits (240), Expect = e-131
 Identities = 435/500 (87%)
 Strand = Plus / Plus

                                                                            
Query: 181      atcaaggacttgtactcttcgttctcagcacaccctctacttctgagtacactcattaac 240
                ||||| |||||||||||||| |||||  | |||| ||||||||| |||||| |||| |||
Sbjct: 27229964 atcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaac 27230023

                                                                            
Query: 241      ctgtcgacactctccgtgtcattcttctccttgaaatatgccaggagagtctcaacattg 300
                |||||  | || || |  || || |||||||||||||  || |||||  |||||||||||
Sbjct: 27230024 ctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattg 27230083

                                                                            
Query: 301      gttggtcttggtctccatttacttgcacttttaactgctgtggctttctccaaacatgac 360
                || ||||||||||||||||| |||| ||||  |||||| |||||||||||||||||||||
Sbjct: 27230084 gtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgac 27230143

                                                                            
Query: 361      agagcttctgataattggttatccttcaggtacgccgtggcaaggatttcccaggtgttt 420
                || ||||| ||| ||||    ||||||||||| || ||| ||||||||||||||||||||
Sbjct: 27230144 agtgcttcagatgattgaccgtccttcaggtatgctgtgccaaggatttcccaggtgttt 27230203

                                                                            
Query: 421      ggtttggggttcccacctttctcaacaaatctgttcagagtttgctgagccttcacgaca 480
                ||||| || || |||||||||||||||||||||||||||||||||| ||||||    |||
Sbjct: 27230204 ggttttggatttccacctttctcaacaaatctgttcagagtttgctcagccttggtaaca 27230263

                                                                            
Query: 481      aagccttctctagaataccatgctaataaaatgttcatggtcttaggatcgaaactagaa 540
                ||||||||||| | |||||| ||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 27230264 aagccttctctggcataccacgctaataaaatgttcatagtcttaggatcaaaactggaa 27230323

                                                                            
Query: 541      cttttggatgcccattcttcgtatagaagttcagctccctctatatcccctagcctaaca 600
                || |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 27230324 ctcttggatgcccattcctcgtaaagaagttcagctccctcaatatctcctagcctaaca 27230383

                                                                            
Query: 601      agggcagacaatacctcctggtaacccagattatgaattgtcttgaaagttgctttgtac 660
                |||||||| | |||||||||||||||||| |||||||||||   ||||||||||||||||
Sbjct: 27230384 agggcagatagtacctcctggtaacccaggttatgaattgtggggaaagttgctttgtac 27230443

                                    
Query: 661      caattccaaatgcggtagac 680
                |||||||||| |||||||||
Sbjct: 27230444 caattccaaacgcggtagac 27230463
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>emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03,
             complete sequence
          Length = 136656

 Score =  476 bits (240), Expect = e-131
 Identities = 435/500 (87%)
 Strand = Plus / Plus

                                                                         
Query: 181   atcaaggacttgtactcttcgttctcagcacaccctctacttctgagtacactcattaac 240
             ||||| |||||||||||||| |||||  | |||| ||||||||| |||||| |||| |||
Sbjct: 61053 atcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaac 61112

                                                                         
Query: 241   ctgtcgacactctccgtgtcattcttctccttgaaatatgccaggagagtctcaacattg 300
             |||||  | || || |  || || |||||||||||||  || |||||  |||||||||||
Sbjct: 61113 ctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattg 61172

                                                                         
Query: 301   gttggtcttggtctccatttacttgcacttttaactgctgtggctttctccaaacatgac 360
             || ||||||||||||||||| |||| ||||  |||||| |||||||||||||||||||||
Sbjct: 61173 gtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgac 61232

                                                                         
Query: 361   agagcttctgataattggttatccttcaggtacgccgtggcaaggatttcccaggtgttt 420
             || ||||| ||| ||||    ||||||||||| || ||| ||||||||||||||||||||
Sbjct: 61233 agtgcttcagatgattgaccgtccttcaggtatgctgtgccaaggatttcccaggtgttt 61292

                                                                         
Query: 421   ggtttggggttcccacctttctcaacaaatctgttcagagtttgctgagccttcacgaca 480
             ||||| || || |||||||||||||||||||||||||||||||||| ||||||    |||
Sbjct: 61293 ggttttggatttccacctttctcaacaaatctgttcagagtttgctcagccttggtaaca 61352

                                                                         
Query: 481   aagccttctctagaataccatgctaataaaatgttcatggtcttaggatcgaaactagaa 540
             ||||||||||| | |||||| ||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 61353 aagccttctctggcataccacgctaataaaatgttcatagtcttaggatcaaaactggaa 61412

                                                                         
Query: 541   cttttggatgcccattcttcgtatagaagttcagctccctctatatcccctagcctaaca 600
             || |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 61413 ctcttggatgcccattcctcgtaaagaagttcagctccctcaatatctcctagcctaaca 61472

                                                                         
Query: 601   agggcagacaatacctcctggtaacccagattatgaattgtcttgaaagttgctttgtac 660
             |||||||| | |||||||||||||||||| |||||||||||   ||||||||||||||||
Sbjct: 61473 agggcagatagtacctcctggtaacccaggttatgaattgtggggaaagttgctttgtac 61532

                                 
Query: 661   caattccaaatgcggtagac 680
             |||||||||| |||||||||
Sbjct: 61533 caattccaaacgcggtagac 61552
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>gb|BC079756.1| Xenopus laevis MGC84791 protein, mRNA (cDNA clone MGC:84791
           IMAGE:6952365), complete cds
          Length = 4307

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 448 aatctgttcagagtttgctgag 469
           ||||||||||||||||||||||
Sbjct: 696 aatctgttcagagtttgctgag 675
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>emb|CT009512.6| Mouse DNA sequence from clone RP23-94B13 on chromosome 14, complete
              sequence
          Length = 232468

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 64     ttcttccaacattcagattacaagca 89
              ||||||||||||| ||||||||||||
Sbjct: 180396 ttcttccaacattgagattacaagca 180371
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>ref|XM_744614.1| Aspergillus fumigatus Af293 mRNA capping enzyme subunit alpha
           (Afu2g05780) partial mRNA
          Length = 1248

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 cttctccttgaaatatgccag 284
           |||||||||||||||||||||
Sbjct: 504 cttctccttgaaatatgccag 484
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>ref|NM_205056.1| Gallus gallus hydroxyacyl-Coenzyme A
            dehydrogenase/3-ketoacyl-Coenzyme A
            thiolase/enoyl-Coenzyme A hydratase (trifunctional
            protein), alpha subunit (HADHA), mRNA
          Length = 2321

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 415  gtgtttggtttggggttcccacctt 439
            |||||||||||||| ||||||||||
Sbjct: 2140 gtgtttggtttgggcttcccacctt 2164
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>emb|BX276128.8| Zebrafish DNA sequence from clone CH211-215C18 in linkage group 5,
             complete sequence
          Length = 176461

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 256   gtgtcattcttctccttgaaa 276
             |||||||||||||||||||||
Sbjct: 22723 gtgtcattcttctccttgaaa 22743
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>gb|U83249.1|GGU83249 Gallus gallus CFR-associated protein p70 mRNA, complete cds
          Length = 2321

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 415  gtgtttggtttggggttcccacctt 439
            |||||||||||||| ||||||||||
Sbjct: 2140 gtgtttggtttgggcttcccacctt 2164
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>ref|XM_467464.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2665

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  tgcacttttaactgctgtgg 343
            ||||||||||||||||||||
Sbjct: 1534 tgcacttttaactgctgtgg 1553
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>emb|CR786566.25| Zebrafish DNA sequence from clone DKEYP-2E4 in linkage group 13,
            complete sequence
          Length = 131584

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 628  agattatgaattgtcttgaaagtt 651
            |||||||||| |||||||||||||
Sbjct: 5320 agattatgaagtgtcttgaaagtt 5297
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>gb|AC113554.9| Homo sapiens chromosome 17, clone CTD-2501B8, complete sequence
          Length = 179509

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   tgctgtggctttctccaaac 355
             ||||||||||||||||||||
Sbjct: 58975 tgctgtggctttctccaaac 58956
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>emb|BX005305.21| Zebrafish DNA sequence from clone DKEY-29C11 in linkage group 12,
             complete sequence
          Length = 149401

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 628   agattatgaattgtcttgaaagtt 651
             |||||||||| |||||||||||||
Sbjct: 66448 agattatgaagtgtcttgaaagtt 66471



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 628  agattatgaattgtcttgaaagtt 651
            |||||||||| |||||||||||||
Sbjct: 8563 agattatgaagtgtcttgaaagtt 8586
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>emb|AL158073.10| Human DNA sequence from clone RP11-323A7 on chromosome 9 Contains a
             cell division cycle associated 7 (JPO1, FLJ14722) (CDCA7)
             pseudogene, complete sequence
          Length = 186334

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   cttttaactgctgtggcttt 347
             ||||||||||||||||||||
Sbjct: 23749 cttttaactgctgtggcttt 23768
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>emb|AL157707.12| Human DNA sequence from clone RP11-157F10 on chromosome 10 Contains
             part of the PIP5K2A gene for
             phosphatidylinositol-4-phosphate 5-kinase type II alpha,
             complete sequence
          Length = 49433

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   ataccatgctaataaaatgt 514
             ||||||||||||||||||||
Sbjct: 25372 ataccatgctaataaaatgt 25353
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>gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162313

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    aatcatatcattggtgtcca 139
              ||||||||||||||||||||
Sbjct: 156327 aatcatatcattggtgtcca 156346
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>emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on chromosome 4, complete
              sequence
          Length = 211513

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 631    ttatgaattgtcttgaaagt 650
              ||||||||||||||||||||
Sbjct: 162957 ttatgaattgtcttgaaagt 162976
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>emb|CR391919.5| Zebrafish DNA sequence from clone DKEY-174K18 in linkage group 1,
             complete sequence
          Length = 179764

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 628   agattatgaattgtcttgaaagtt 651
             |||||||||| |||||||||||||
Sbjct: 27974 agattatgaagtgtcttgaaagtt 27997
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>emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 129/Sv, complete sequence
          Length = 167508

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    gctgtggaataaaaagaagt 29
             ||||||||||||||||||||
Sbjct: 52132 gctgtggaataaaaagaagt 52151
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>gb|AC025175.4| Homo sapiens chromosome 5 clone CTD-2081C10, complete sequence
          Length = 166907

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    aaacatgacagagcttctga 371
              ||||||||||||||||||||
Sbjct: 145447 aaacatgacagagcttctga 145428
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>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold
          Length = 288075

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    ctgtggctttctccaaacat 357
              ||||||||||||||||||||
Sbjct: 241592 ctgtggctttctccaaacat 241573
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>gb|AC164543.1| Monodelphis domestica, clone XX-2262O1, complete sequence
          Length = 142500

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 569   gttcagctccctctatatccccta 592
             |||||||||||||||| |||||||
Sbjct: 14766 gttcagctccctctatgtccccta 14789
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 324      tgcacttttaactgctgtgg 343
                ||||||||||||||||||||
Sbjct: 29692382 tgcacttttaactgctgtgg 29692401
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>gb|AC154704.2| Mus musculus BAC clone RP24-349I24 from chromosome 9, complete sequence
          Length = 188875

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 1     cacctaaacgctgtggaataaaaagaag 28
             |||||||||||| | |||||||||||||
Sbjct: 49866 cacctaaacgctctagaataaaaagaag 49839
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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   tgcacttttaactgctgtgg 343
             ||||||||||||||||||||
Sbjct: 61361 tgcacttttaactgctgtgg 61380
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>dbj|AK070855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066G02, full
            insert sequence
          Length = 2664

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  tgcacttttaactgctgtgg 343
            ||||||||||||||||||||
Sbjct: 1533 tgcacttttaactgctgtgg 1552
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>gb|AC150679.4| Monodelphis domestica, clone XX-20E6, complete sequence
          Length = 159739

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 569    gttcagctccctctatatccccta 592
              |||||||||||||||| |||||||
Sbjct: 113731 gttcagctccctctatgtccccta 113708
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>emb|AL049871.4|CNS0000U Human chromosome 14 DNA sequence BAC R-696D21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169650

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    cttttaactgctgtggcttt 347
              ||||||||||||||||||||
Sbjct: 137048 cttttaactgctgtggcttt 137029
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>gb|AC104197.14| Mus musculus chromosome 8, clone RP24-319N16, complete sequence
          Length = 195334

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    cttttaactgctgtggcttt 347
              ||||||||||||||||||||
Sbjct: 189820 cttttaactgctgtggcttt 189839
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>gb|AC115820.11| Mus musculus chromosome 8, clone RP23-479K9, complete sequence
          Length = 185977

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    cttttaactgctgtggcttt 347
              ||||||||||||||||||||
Sbjct: 135910 cttttaactgctgtggcttt 135891
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>gb|AC139320.4| Mus musculus BAC clone RP24-410G8 from 9, complete sequence
          Length = 176888

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 610    aatacctcctggtaacccag 629
              ||||||||||||||||||||
Sbjct: 136864 aatacctcctggtaacccag 136883
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>gb|AC112263.4| Mus musculus BAC clone RP23-403P24 from 5, complete sequence
          Length = 189091

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    ttcagagtttgctgagcctt 473
              ||||||||||||||||||||
Sbjct: 143008 ttcagagtttgctgagcctt 142989
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>gb|AC000114.1|HSAC000114 Human PAC clone DJ527C21 from Xq23, complete sequence
          Length = 172151

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   cttttaactgctgtggcttt 347
             ||||||||||||||||||||
Sbjct: 89757 cttttaactgctgtggcttt 89738


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,212,352
Number of Sequences: 3902068
Number of extensions: 6212352
Number of successful extensions: 112782
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112637
Number of HSP's gapped (non-prelim): 139
length of query: 680
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 657
effective length of database: 17,143,297,704
effective search space: 11263146591528
effective search space used: 11263146591528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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