ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OMT1_ORYSA (Q6ZD89) Quercetin 3-O-methyltransferase 1 (EC 2.1.1.... 36 0.024
2COMT1_MAIZE (Q06509) Caffeic acid 3-O-methyltransferase (EC 2.1.... 33 0.16
3COMT1_SACOF (O82054) Caffeic acid 3-O-methyltransferase (EC 2.1.... 32 0.35
4RMUC_NEIMB (Q9JXH2) DNA recombination protein rmuC homolog 28 6.6
5RMUC_NEIMA (Q9JWG3) DNA recombination protein rmuC homolog 28 6.6

>OMT1_ORYSA (Q6ZD89) Quercetin 3-O-methyltransferase 1 (EC 2.1.1.76) (Flavonol|
           3-O-methyltransferase 1)
          Length = 368

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -2

Query: 196 KEFARLAKQAGXTGGIKKTYIFXNXYALEFT 104
           +EF  LA+ AG TG  K TYI+ N +A+EFT
Sbjct: 338 REFRELARAAGFTG-FKATYIYANAWAIEFT 367



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>COMT1_MAIZE (Q06509) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)|
           (S-adenosysl-L-methionine:caffeic acid
           3-O-methyltransferase) (COMT) (CAOMT)
          Length = 364

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = -2

Query: 196 KEFARLAKQAGXTGGIKKTYIFXNXYALEF 107
           +EF  LAK AG +G  K TYI+ N +A+EF
Sbjct: 334 REFRELAKGAGFSG-FKATYIYANAWAIEF 362



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>COMT1_SACOF (O82054) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)|
           (S-adenosysl-L-methionine:caffeic acid
           3-O-methyltransferase) (COMT) (CAOMT)
          Length = 362

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = -2

Query: 196 KEFARLAKQAGXTGGIKKTYIFXNXYALEF 107
           +EF  LAK AG +G  K TYI+ N +A+EF
Sbjct: 332 REFHDLAKGAGFSG-FKATYIYANAWAIEF 360



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>RMUC_NEIMB (Q9JXH2) DNA recombination protein rmuC homolog|
          Length = 594

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +3

Query: 9   ARELAALIRDIXXKXRSAPXRDYTXLVRGCYXVNSRAXKLXNM*VFLMPPVNPACLASLA 188
           ARELAA +  I    +    +DYT L  G   ++          VF+  PV PA L +L 
Sbjct: 409 ARELAAHVASIRAHMKGLSLKDYTDL-EGVNTLDF---------VFMFIPVEPAYLLALQ 458

Query: 189 N 191
           N
Sbjct: 459 N 459



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>RMUC_NEIMA (Q9JWG3) DNA recombination protein rmuC homolog|
          Length = 594

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +3

Query: 9   ARELAALIRDIXXKXRSAPXRDYTXLVRGCYXVNSRAXKLXNM*VFLMPPVNPACLASLA 188
           ARELAA +  I    +    +DYT L  G   ++          VF+  PV PA L +L 
Sbjct: 409 ARELAAHVASIRAHMKGLSLKDYTDL-EGVNTLDF---------VFMFIPVEPAYLLALQ 458

Query: 189 N 191
           N
Sbjct: 459 N 459


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,789,338
Number of Sequences: 219361
Number of extensions: 179370
Number of successful extensions: 218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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