ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, p... 281 4e-73
2gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransf... 281 4e-73
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.040
4emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb... 46 0.040
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.040
6emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 46 0.040
7emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003... 46 0.040
8gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete s... 40 2.5
9gb|AY654286.1| Homo sapiens interferon (alpha, beta and omega) r... 38 9.8
10dbj|AP000044.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 38 9.8
11dbj|AP001716.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 9.8
12dbj|AP000298.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 38 9.8
13dbj|AP000188.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 38 9.8
14emb|AL845337.3| Mouse DNA sequence from clone RP23-373A4 on chro... 38 9.8
15dbj|AP000112.1| Homo sapiens genomic DNA of 21q22.1, GART and AM... 38 9.8 
>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds
          Length = 983

 Score =  281 bits (142), Expect = 4e-73
 Identities = 179/197 (90%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaatgagcacgtgagctcgcngctcttattcgggacattnttngnnnnnnnngaagtg 60
           ||||||||||||||||||| || |||||||||||||||||| || |        ||||||
Sbjct: 924 ataaatgagcacgtgagctagcagctcttattcgggacattattcgcaaaaaaagaagtg 865

                                                                       
Query: 61  ctcctatncgggactataccantctggtacgtggatgctactnggtgaactcaagagcgt 120
           ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 864 ctcctattcgggactataccactctggtacgtggatgctacttggtgaactcaagagcgt 805

                                                                       
Query: 121 anaagttgangaatatgtaggttttcttgatgccaccggtnaatccagcttgtttggcta 180
           | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 804 aaaagttgaagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggcta 745

                            
Query: 181 gcctggcaaactccttc 197
           |||||||||||||||||
Sbjct: 744 gcctggcaaactccttc 728
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>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
            complete cds
          Length = 5238

 Score =  281 bits (142), Expect = 4e-73
 Identities = 179/197 (90%)
 Strand = Plus / Minus

                                                                        
Query: 1    ataaatgagcacgtgagctcgcngctcttattcgggacattnttngnnnnnnnngaagtg 60
            ||||||||||||||||||| || |||||||||||||||||| || |        ||||||
Sbjct: 4827 ataaatgagcacgtgagctagcagctcttattcgggacattattcgcaaaaaaagaagtg 4768

                                                                        
Query: 61   ctcctatncgggactataccantctggtacgtggatgctactnggtgaactcaagagcgt 120
            ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 4767 ctcctattcgggactataccactctggtacgtggatgctacttggtgaactcaagagcgt 4708

                                                                        
Query: 121  anaagttgangaatatgtaggttttcttgatgccaccggtnaatccagcttgtttggcta 180
            | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4707 aaaagttgaagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggcta 4648

                             
Query: 181  gcctggcaaactccttc 197
            |||||||||||||||||
Sbjct: 4647 gcctggcaaactccttc 4631
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 106     tgaactcaagagcgtanaagttgangaatatgtaggt 142
               ||||||||||||| || ||||| | ||||||||||||
Sbjct: 5374724 tgaactcaagagcatagaagttcaagaatatgtaggt 5374688



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 106     tgaactcaagagcgtanaagttgangaatatgtaggt 142
               |||||||||| ||||| ||||| | ||||||||||||
Sbjct: 5173406 tgaactcaagggcgtagaagttcaagaatatgtaggt 5173370
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>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 106   tgaactcaagagcgtanaagttgangaatatgtaggt 142
             ||||||||||||| || ||||| | ||||||||||||
Sbjct: 46791 tgaactcaagagcatagaagttcaagaatatgtaggt 46755
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 106     tgaactcaagagcgtanaagttgangaatatgtaggt 142
               ||||||||||||| || ||||| | ||||||||||||
Sbjct: 5374713 tgaactcaagagcatagaagttcaagaatatgtaggt 5374677



 Score = 46.1 bits (23), Expect = 0.040
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 106     tgaactcaagagcgtanaagttgangaatatgtaggt 142
               |||||||||| ||||| ||||| | ||||||||||||
Sbjct: 5173388 tgaactcaagggcgtagaagttcaagaatatgtaggt 5173352
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>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 141841

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 106   tgaactcaagagcgtanaagttgangaatatgtaggt 142
             ||||||||||||| || ||||| | ||||||||||||
Sbjct: 91084 tgaactcaagagcatagaagttcaagaatatgtaggt 91120
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>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124959

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 106   tgaactcaagagcgtanaagttgangaatatgtaggt 142
             |||||||||| ||||| ||||| | ||||||||||||
Sbjct: 90193 tgaactcaagggcgtagaagttcaagaatatgtaggt 90229
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>gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete sequence
          Length = 162405

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   ggctagcctggcaaactcct 195
             ||||||||||||||||||||
Sbjct: 87830 ggctagcctggcaaactcct 87811
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>gb|AY654286.1| Homo sapiens interferon (alpha, beta and omega) receptor 1 (IFNAR1)
             gene, complete cds
          Length = 35410

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 133   atatgtaggttttcttgat 151
             |||||||||||||||||||
Sbjct: 30741 atatgtaggttttcttgat 30759
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>dbj|AP000044.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 15/28, complete
             sequence
          Length = 100000

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 133   atatgtaggttttcttgat 151
             |||||||||||||||||||
Sbjct: 75660 atatgtaggttttcttgat 75678
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>dbj|AP001716.1| Homo sapiens genomic DNA, chromosome 21q, section 60/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 133    atatgtaggttttcttgat 151
              |||||||||||||||||||
Sbjct: 301810 atatgtaggttttcttgat 301828
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>dbj|AP000298.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
            clone:Q38G8, complete sequence
          Length = 25560

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 133  atatgtaggttttcttgat 151
            |||||||||||||||||||
Sbjct: 1647 atatgtaggttttcttgat 1665
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>dbj|AP000188.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             Q78C10-f32E9, segment 15/21, complete sequence
          Length = 100000

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 133   atatgtaggttttcttgat 151
             |||||||||||||||||||
Sbjct: 81636 atatgtaggttttcttgat 81654
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>emb|AL845337.3| Mouse DNA sequence from clone RP23-373A4 on chromosome 2, complete
             sequence
          Length = 64856

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 131   gaatatgtaggttttcttg 149
             |||||||||||||||||||
Sbjct: 41933 gaatatgtaggttttcttg 41915
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>dbj|AP000112.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             Q78C10-149C3 region, segment 15/20
          Length = 100000

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 133   atatgtaggttttcttgat 151
             |||||||||||||||||||
Sbjct: 81636 atatgtaggttttcttgat 81654


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 697,590
Number of Sequences: 3902068
Number of extensions: 697590
Number of successful extensions: 35247
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35206
Number of HSP's gapped (non-prelim): 41
length of query: 197
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 175
effective length of database: 17,147,199,772
effective search space: 3000759960100
effective search space used: 3000759960100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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