ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018784.1| Zea mays clone EL01N0527D07.d mRNA sequence 80 1e-11
2gb|AY108406.1| Zea mays PCO080983 mRNA sequence 80 1e-11
3dbj|AK122040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
4gb|AY103680.1| Zea mays PCO080984 mRNA sequence 78 4e-11
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
6gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 64 6e-07
7gb|AC090432.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 46 0.15
8gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 42 2.3
9emb|CR628337.1| Legionella pneumophila str. Lens complete genome 42 2.3
10emb|CR628336.1| Legionella pneumophila str. Paris complete genome 42 2.3
11gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome... 42 2.3
12dbj|AK042325.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 2.3
13emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chr... 42 2.3
14gb|AC166823.3| Mus musculus BAC clone RP23-435F22 from chromosom... 40 9.1
15gb|AC163339.5| Mus musculus BAC clone RP24-447O5 from chromosome... 40 9.1
16ref|NM_184576.1| Oryza sativa (japonica cultivar-group), predic... 40 9.1
17ref|XM_988444.1| PREDICTED: Mus musculus similar to T-cell recep... 40 9.1
18ref|XM_903612.1| PREDICTED: Mus musculus similar to T-cell recep... 40 9.1
19gb|AC098876.4| Mus musculus BAC clone RP23-1O17 from 14, complet... 40 9.1
20gb|AE004209.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 9.1
21emb|AL645904.13| Mouse DNA sequence from clone RP23-121P11 on ch... 40 9.1
22gb|AC022419.7| Homo sapiens chromosome 5 clone CTD-2026L11, comp... 40 9.1
23gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104... 40 9.1
24gb|AE008685.1|AE008685 Mus musculus T-cell receptor alpha/delta ... 40 9.1
25emb|BX640463.14| Zebrafish DNA sequence from clone DKEY-29P10 in... 40 9.1
26dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
27dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
29gb|AC026797.3|AC026797 Homo sapiens chromosome 5 clone CTD-2299N... 40 9.1
30gb|AC093904.3| Homo sapiens BAC clone RP11-734K21 from 2, comple... 40 9.1
31dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
32dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
33dbj|AP006237.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
34dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
35emb|BX538340.1|HSM806614 Homo sapiens mRNA; cDNA DKFZp686B22215 ... 40 9.1
36gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, comple... 40 9.1
37gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complet... 40 9.1
38gb|AC142449.3| Mus musculus BAC clone RP24-478I6 from 14, comple... 40 9.1
39gb|AC003995.1|AC003995 Mouse Cosmid ma66a094 from 14D1-D2 (T-Cel... 40 9.1
40gb|AC140461.4| Mus musculus BAC clone RP23-11M24 from 1, complet... 40 9.1
41gb|AC161459.5| Mus musculus BAC clone RP23-117I19 from chromosom... 40 9.1 
>gb|BT018784.1| Zea mays clone EL01N0527D07.d mRNA sequence
          Length = 2082

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 74/84 (88%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                        
Query: 455  gtctgtggctttcggtgctggctttggctttgtcatgatcgttttgcaaaatctgtcaag 514
            ||||||||||| ||| ||||||||||| || |||||||||| |||||| || ||||||||
Sbjct: 1636 gtctgtggctt-cggagctggctttggtttagtcatgatcggtttgcagaacctgtcaag 1578

                                    
Query: 515  tgcttccgccttcttcttgagatc 538
            |||||| || |||||||| |||||
Sbjct: 1577 tgcttcagctttcttcttcagatc 1554
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>gb|AY108406.1| Zea mays PCO080983 mRNA sequence
          Length = 1289

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 74/84 (88%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                       
Query: 455 gtctgtggctttcggtgctggctttggctttgtcatgatcgttttgcaaaatctgtcaag 514
           ||||||||||| ||| ||||||||||| || |||||||||| |||||| || ||||||||
Sbjct: 814 gtctgtggctt-cggagctggctttggtttagtcatgatcggtttgcagaacctgtcaag 756

                                   
Query: 515 tgcttccgccttcttcttgagatc 538
           |||||| || |||||||| |||||
Sbjct: 755 tgcttcagctttcttcttcagatc 732
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>dbj|AK122040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113E02, full
            insert sequence
          Length = 3137

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 121/147 (82%), Gaps = 1/147 (0%)
 Strand = Plus / Minus

                                                                        
Query: 452  ggggtctgtggctttcggtgctggctttggctttgtcatgatcgttttgcaaaatctgtc 511
            |||||||||||||| |||||| || || ||||||| ||| |||| | ||||  | |||||
Sbjct: 2555 ggggtctgtggctt-cggtgcaggtttcggctttgacataatcggtctgcacgacctgtc 2497

                                                                        
Query: 512  aagtgcttccgccttcttcttgagatcagaaacaaggagagcagggtcagcatgctttgg 571
            ||||||||| || |||||||| |  ||||| |  | |||  |||| ||||||||||||||
Sbjct: 2496 aagtgcttcagctttcttcttcatgtcagatattaagaggacaggatcagcatgctttgg 2437

                                       
Query: 572  taaagcatcctgctgctgttttttctc 598
            || ||||||||||||||| | ||||||
Sbjct: 2436 tagagcatcctgctgctgctgtttctc 2410
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>gb|AY103680.1| Zea mays PCO080984 mRNA sequence
          Length = 1931

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 132/163 (80%)
 Strand = Plus / Minus

                                                                        
Query: 471  gctggctttggctttgtcatgatcgttttgcaaaatctgtcaagtgcttccgccttcttc 530
            |||||||| || || ||||||||||  ||||| || || ||||||| ||| || ||||||
Sbjct: 1463 gctggcttcggtttcgtcatgatcggcttgcagaacctatcaagtgtttcagctttcttc 1404

                                                                        
Query: 531  ttgagatcagaaacaaggagagcagggtcagcatgctttggtaaagcatcctgctgctgt 590
            || || |||| | |||||||  | |  | |||||||||||| | ||||||||||||||| 
Sbjct: 1403 ttaaggtcagcagcaaggagtaccgaattagcatgctttggcagagcatcctgctgctgc 1344

                                                       
Query: 591  tttttctcaagcagccaagtctcggatcccgagcactcattaa 633
            |||||||| |  ||||||||||| | | |||| ||||||||||
Sbjct: 1343 tttttctctattagccaagtctctgcttccgaacactcattaa 1301
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                           
Query: 507     ctgtcaagtgcttccgccttcttcttgagatcagaaacaaggagagcagggtcagcatgc 566
               |||||||||||||| || |||||||| |  ||||| |  | |||  |||| |||||||||
Sbjct: 4825145 ctgtcaagtgcttcagctttcttcttcatgtcagatattaagaggacaggatcagcatgc 4825086

                                               
Query: 567     tttggtaaagcatcctgctgctgttttttctc 598
               ||||||| ||||||||||||||| | ||||||
Sbjct: 4825085 tttggtagagcatcctgctgctgctgtttctc 4825054
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                         
Query: 507   ctgtcaagtgcttccgccttcttcttgagatcagaaacaaggagagcagggtcagcatgc 566
             |||||||||||||| || |||||||| |  ||||| |  | |||  |||| |||||||||
Sbjct: 97553 ctgtcaagtgcttcagctttcttcttcatgtcagatattaagaggacaggatcagcatgc 97494

                                             
Query: 567   tttggtaaagcatcctgctgctgttttttctc 598
             ||||||| ||||||||||||||| | ||||||
Sbjct: 97493 tttggtagagcatcctgctgctgctgtttctc 97462
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>gb|AC090432.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-454P8, complete
              sequence
          Length = 148344

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 626    ctcattaacaaccttttgtttct 648
              |||||||||||||||||||||||
Sbjct: 126996 ctcattaacaaccttttgtttct 127018
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 471     gctggctttggctttgtcatg 491
               |||||||||||||||||||||
Sbjct: 2962345 gctggctttggctttgtcatg 2962365
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 471     gctggctttggctttgtcatg 491
               |||||||||||||||||||||
Sbjct: 2909299 gctggctttggctttgtcatg 2909319
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 471     gctggctttggctttgtcatg 491
               |||||||||||||||||||||
Sbjct: 3049605 gctggctttggctttgtcatg 3049625
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>gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome 13, complete sequence
          Length = 193176

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 549   agagcagggtcagcatgcttt 569
             |||||||||||||||||||||
Sbjct: 77132 agagcagggtcagcatgcttt 77152
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>dbj|AK042325.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630082H19 product:ubiquitin conjugating
           enzyme 7 interacting protein 3, full insert sequence
          Length = 1536

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 125 caggtccagggacaggcacct 145
           |||||||||||||||||||||
Sbjct: 217 caggtccagggacaggcacct 237
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>emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chromosome 2, complete
              sequence
          Length = 193718

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 125    caggtccagggacaggcacct 145
              |||||||||||||||||||||
Sbjct: 190055 caggtccagggacaggcacct 190035
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>gb|AC166823.3| Mus musculus BAC clone RP23-435F22 from chromosome 14, complete
             sequence
          Length = 221537

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tgcagcctgtcctcaaacct 26
             ||||||||||||||||||||
Sbjct: 80613 tgcagcctgtcctcaaacct 80632
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>gb|AC163339.5| Mus musculus BAC clone RP24-447O5 from chromosome 14, complete sequence
          Length = 180291

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      tgcagcctgtcctcaaacct 26
              ||||||||||||||||||||
Sbjct: 111895 tgcagcctgtcctcaaacct 111914
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>ref|NM_184576.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 270

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ctgctcggctgcaggctgct 350
           ||||||||||||||||||||
Sbjct: 100 ctgctcggctgcaggctgct 119
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>ref|XM_988444.1| PREDICTED: Mus musculus similar to T-cell receptor alpha chain V
           region CTL-L17 precursor (LOC671675), mRNA
          Length = 459

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   tgcagcctgtcctcaaacct 26
           ||||||||||||||||||||
Sbjct: 364 tgcagcctgtcctcaaacct 383
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>ref|XM_903612.1| PREDICTED: Mus musculus similar to T-cell receptor alpha chain V
           region CTL-L17 precursor (LOC630462), mRNA
          Length = 459

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   tgcagcctgtcctcaaacct 26
           ||||||||||||||||||||
Sbjct: 364 tgcagcctgtcctcaaacct 383
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>gb|AC098876.4| Mus musculus BAC clone RP23-1O17 from 14, complete sequence
          Length = 234499

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tgcagcctgtcctcaaacct 26
             ||||||||||||||||||||
Sbjct: 47264 tgcagcctgtcctcaaacct 47283
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>gb|AE004209.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 117
            of 251 of the complete chromosome
          Length = 10134

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 473  tggctttggctttgtcatga 492
            ||||||||||||||||||||
Sbjct: 1873 tggctttggctttgtcatga 1892
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>emb|AL645904.13| Mouse DNA sequence from clone RP23-121P11 on chromosome 11 Contains the
             gene for a novel protein (1700121K02Rik), the Hnrph1 gene
             for heterogeneous nuclear ribonucleoprotein H1, the Rufy1
             gene for RUN and FYVE domain containing 1, a novel
             pseudogene and three CpG islands, complete sequence
          Length = 193696

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    cctgtcctcaaaccttgatg 31
             ||||||||||||||||||||
Sbjct: 60367 cctgtcctcaaaccttgatg 60348
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>gb|AC022419.7| Homo sapiens chromosome 5 clone CTD-2026L11, complete sequence
          Length = 104351

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 350   tcccaggcacctccctcactggcc 373
             |||||||| |||||||||||||||
Sbjct: 23551 tcccaggctcctccctcactggcc 23574
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>gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104O10, complete
           sequence
          Length = 207424

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 ctgcaggctgctcccaggca 358
           ||||||||||||||||||||
Sbjct: 413 ctgcaggctgctcccaggca 432
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>gb|AE008685.1|AE008685 Mus musculus T-cell receptor alpha/delta locus  section 3 of 4 of the
              complete region
          Length = 400099

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      tgcagcctgtcctcaaacct 26
              ||||||||||||||||||||
Sbjct: 290620 tgcagcctgtcctcaaacct 290639
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>emb|BX640463.14| Zebrafish DNA sequence from clone DKEY-29P10 in linkage group 18,
             complete sequence
          Length = 233058

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   ctgctgctgttttttctcaa 600
             ||||||||||||||||||||
Sbjct: 55404 ctgctgctgttttttctcaa 55385
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    ctgctcggctgcaggctgct 350
              ||||||||||||||||||||
Sbjct: 990635 ctgctcggctgcaggctgct 990616
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 234      ccaccgacaccgcgaaaaac 253
                ||||||||||||||||||||
Sbjct: 19440316 ccaccgacaccgcgaaaaac 19440297
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 331      ctgctcggctgcaggctgct 350
                ||||||||||||||||||||
Sbjct: 16297083 ctgctcggctgcaggctgct 16297102
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>gb|AC026797.3|AC026797 Homo sapiens chromosome 5 clone CTD-2299N12, complete sequence
          Length = 172043

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 350    tcccaggcacctccctcactggcc 373
              |||||||| |||||||||||||||
Sbjct: 131154 tcccaggctcctccctcactggcc 131131
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>gb|AC093904.3| Homo sapiens BAC clone RP11-734K21 from 2, complete sequence
          Length = 191827

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 508   tgtcaagtgcttccgccttc 527
             ||||||||||||||||||||
Sbjct: 28177 tgtcaagtgcttccgccttc 28158
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>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0409B11
          Length = 168354

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    ccaccgacaccgcgaaaaac 253
              ||||||||||||||||||||
Sbjct: 129854 ccaccgacaccgcgaaaaac 129835
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>dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0646B04
          Length = 178896

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    ctgctcggctgcaggctgct 350
              ||||||||||||||||||||
Sbjct: 154762 ctgctcggctgcaggctgct 154743
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>dbj|AP006237.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0008D07
          Length = 156874

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   ctgctcggctgcaggctgct 350
             ||||||||||||||||||||
Sbjct: 59160 ctgctcggctgcaggctgct 59179
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>dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1134_E08
          Length = 153002

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   ctgctcggctgcaggctgct 350
             ||||||||||||||||||||
Sbjct: 28328 ctgctcggctgcaggctgct 28309
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>emb|BX538340.1|HSM806614 Homo sapiens mRNA; cDNA DKFZp686B22215 (from clone DKFZp686B22215)
          Length = 3287

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 508  tgtcaagtgcttccgccttc 527
            ||||||||||||||||||||
Sbjct: 1285 tgtcaagtgcttccgccttc 1266
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>gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, complete sequence
          Length = 182809

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   ctgcaggctgctcccaggca 358
             ||||||||||||||||||||
Sbjct: 56788 ctgcaggctgctcccaggca 56769
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>gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complete sequence
          Length = 163490

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 539    agaaacaaggagagcagggt 558
              ||||||||||||||||||||
Sbjct: 130238 agaaacaaggagagcagggt 130257
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>gb|AC142449.3| Mus musculus BAC clone RP24-478I6 from 14, complete sequence
          Length = 173207

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tgcagcctgtcctcaaacct 26
             ||||||||||||||||||||
Sbjct: 75989 tgcagcctgtcctcaaacct 76008
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>gb|AC003995.1|AC003995 Mouse Cosmid ma66a094 from 14D1-D2 (T-Cell Receptor Alpha Locus),
            complete sequence
          Length = 36254

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    tgcagcctgtcctcaaacct 26
            ||||||||||||||||||||
Sbjct: 9236 tgcagcctgtcctcaaacct 9255
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>gb|AC140461.4| Mus musculus BAC clone RP23-11M24 from 1, complete sequence
          Length = 202209

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   agaaacaaggagagcagggt 558
             ||||||||||||||||||||
Sbjct: 14329 agaaacaaggagagcagggt 14348
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>gb|AC161459.5| Mus musculus BAC clone RP23-117I19 from chromosome 14, complete sequence
          Length = 212988

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      tgcagcctgtcctcaaacct 26
              ||||||||||||||||||||
Sbjct: 211905 tgcagcctgtcctcaaacct 211924


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,022,739
Number of Sequences: 3902068
Number of extensions: 6022739
Number of successful extensions: 129814
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129531
Number of HSP's gapped (non-prelim): 282
length of query: 667
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 644
effective length of database: 17,143,297,704
effective search space: 11040283721376
effective search space used: 11040283721376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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