ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6o06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat... 30 2.6

>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)|
            (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte
            nuclear envelope protein 1) (Myne-1) (Enaptin)
          Length = 8797

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 50   GLXTPQRRXLKRSSE-WHKYQNNTHAYATDHK*QQRRSLTDHRTCDEISVSRGL 208
            GL T + + L+   E W +Y+NN     T  + Q++R    HR  D+ SV   L
Sbjct: 7008 GLVTEKIQLLEGLLESWSEYENNVQCLKTWFETQEKRLKQQHRIGDQASVQNAL 7061


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,688,088
Number of Sequences: 219361
Number of extensions: 590560
Number of successful extensions: 1620
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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