ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7d05 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 186 bits (473), Expect = 3e-47 Identities = 93/107 (86%), Positives = 93/107 (86%) Frame = -2 Query: 576 KTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERL 397 KTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERL Sbjct: 945 KTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERL 1004 Query: 396 DRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 256 DRKVVDVAREVAKMEVPSYRRHL DIPLVSVYFR Sbjct: 1005 DRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 186 bits (473), Expect = 3e-47 Identities = 93/107 (86%), Positives = 93/107 (86%) Frame = -2 Query: 576 KTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERL 397 KTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERL Sbjct: 945 KTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERL 1004 Query: 396 DRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 256 DRKVVDVAREVAKMEVPSYRRHL DIPLVSVYFR Sbjct: 1005 DRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 150 bits (380), Expect = 2e-36 Identities = 71/107 (66%), Positives = 83/107 (77%) Frame = -2 Query: 576 KTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERL 397 K +KH+E SWTVWDRW+V GN+TL ELL+W +KGL AYSISCGTSLLYN+MF RHK+RL Sbjct: 947 KVMKHKETSWTVWDRWSVQGNLTLAELLQWFADKGLTAYSISCGTSLLYNNMFARHKDRL 1006 Query: 396 DRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 256 +KVVD+AREVAK++VP YRRHL DIPLVSVYFR Sbjct: 1007 TKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 64.7 bits (156), Expect = 2e-10 Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 3/75 (4%) Frame = -2 Query: 543 VWDRWTVTGNITLRELLEWL-KEKGLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVA 373 +WDR+ + G+ITL+ELL+ KE+GL +S G SLLY S FP + K+RL K+ + Sbjct: 108 IWDRFELNGDITLQELLDHFEKEEGLTISMLSYGVSLLYASFFPPKKVKDRLGLKLTSLI 167 Query: 372 REVAKMEVPSYRRHL 328 +EV+K EVPS+ ++L Sbjct: 168 KEVSKKEVPSHVKNL 182
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 53.1 bits (126), Expect = 5e-07 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Frame = -2 Query: 543 VWDRWTVTGNITLRELLEWL-KEKGLNAYSISCGTSLLYNSMFP--RHKERLDRKVVDVA 373 +WDR+ + G+I L +L+E K++GL +S G SLLY S FP + KERL+ + + Sbjct: 927 IWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLV 986 Query: 372 REVAKMEVPSY 340 + V K ++P++ Sbjct: 987 KLVTKKDIPAH 997
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 50.4 bits (119), Expect = 4e-06 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Frame = -2 Query: 543 VWDRWTVTGNITLRELLEWL-KEKGLNAYSISCGTSLLYNSMFPRHK--ERLDRKVVDVA 373 +WDR+ + + TL+EL+++ KE+GL +S G SLLY + P K ERL K+ ++ Sbjct: 916 IWDRYNLP-DCTLQELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELV 974 Query: 372 REVAKMEVPSYRRHL 328 ++ K ++ +R+HL Sbjct: 975 EQITKKKLEPFRKHL 989
>UBE1X_MOUSE (P31253) Ubiquitin-activating enzyme E1 X (Fragment)| Length = 450 Score = 49.3 bits (116), Expect = 8e-06 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 9/82 (10%) Frame = -2 Query: 549 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 397 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 338 WTLWDRFEVQGVQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERL 397 Query: 396 DRKVVDVAREVAKMEVPSYRRH 331 D+ + ++ V+K ++ + RH Sbjct: 398 DQPMTEIVSRVSKRKLGRHVRH 419
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 47.0 bits (110), Expect = 4e-05 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Frame = -2 Query: 549 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 397 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 952 WTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERL 1011 Query: 396 DRKVVDVAREVAKMEVPSYRRHL 328 D+ + ++ V+K ++ + R L Sbjct: 1012 DQPMTEIVSRVSKRKLGRHVRAL 1034
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 47.0 bits (110), Expect = 4e-05 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Frame = -2 Query: 549 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 397 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 952 WTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERL 1011 Query: 396 DRKVVDVAREVAKMEVPSYRRHL 328 D+ + ++ V+K ++ + R L Sbjct: 1012 DQPMTEIVSRVSKRKLGRHVRAL 1034
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 47.0 bits (110), Expect = 4e-05 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Frame = -2 Query: 549 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 397 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 952 WTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERL 1011 Query: 396 DRKVVDVAREVAKMEVPSYRRHL 328 D+ + ++ V+K ++ + R L Sbjct: 1012 DQPMTEIVSRVSKRKLGRHVRAL 1034
>UBE1Y_MOUSE (P31254) Ubiquitin-activating enzyme E1 Y (Fragment)| Length = 442 Score = 45.8 bits (107), Expect = 9e-05 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 9/83 (10%) Frame = -2 Query: 549 WTVWDRWTVTG------NITLRELLEWLK-EKGLNAYSISCGTSLLYNSMFP--RHKERL 397 WT+WDR+ V G +TL++ L++ K E L +S G S+LY+ P + KERL Sbjct: 336 WTLWDRFDVQGLQPSGEEMTLKQFLDYFKTEHKLEVIMLSQGVSMLYSVFMPASKLKERL 395 Query: 396 DRKVVDVAREVAKMEVPSYRRHL 328 D+ + ++ V+K ++ + + L Sbjct: 396 DQPMTEIVSCVSKQKLGHHVKSL 418
>Y062_METJA (Q60369) Hypothetical protein MJ0062| Length = 207 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = -2 Query: 504 RELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAR 370 +++LE+LK++ LN + CGT LY E+ RKV ++ R Sbjct: 19 KKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKR 63
>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific protease 2) Length = 984 Score = 31.6 bits (70), Expect = 1.7 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%) Frame = +1 Query: 163 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDIVVIVILTGHHDVEMTPV 342 +LT++NAT S + S+ E + +DIV I L + E+ + Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353 Query: 343 RGHLHLGHLPGNINYLSVKPFLV------PGEHRVVE 435 + GH GN + +S +P +V P EH+ E Sbjct: 354 EKPILRGHNEGNQSLISAEPIVVSSDEEGPVEHKSSE 390
>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 398 Score = 30.8 bits (68), Expect = 2.9 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 345 RAPPSWPPPWQHQLP 389 + PP WPPPW Q+P Sbjct: 112 KGPPDWPPPWGVQMP 126
>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 654 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 280 DVDIVVIVILTGHHDVEMTPVRGHLHLG 363 D+DI+ + I GH V + VRG HLG Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295
>SYY2_BACCR (Q815S0) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 420 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 337 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 453 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD| Length = 311 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 286 DIVVIVILTGHHDVEMTPVRGHLHLGHL 369 D+ VI L GH D+ T + HLH HL Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294
>SYY2_BACCZ (Q631P9) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 337 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 453 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACC1 (Q72Y10) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 337 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 453 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>SYY2_BACAN (Q81XC6) Tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (Tyrosine--tRNA| ligase 2) (TyrRS 2) Length = 419 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 337 PVRGHLHLGHLPGNINYLSVKPFLVPGEHRVVEQRGATG 453 P +H+GHL I ++ +K F + G H V+ GATG Sbjct: 39 PTGDSMHIGHL---IPFMMMKRFQLAGHHPVILIGGATG 74
>MURA1_CLOTE (Q899K4) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (EC| 2.5.1.7) (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) Length = 421 Score = 29.3 bits (64), Expect = 8.4 Identities = 9/30 (30%), Positives = 20/30 (66%) Frame = -2 Query: 453 SCGTSLLYNSMFPRHKERLDRKVVDVAREV 364 +CG ++ N++ P+H E + K++++ EV Sbjct: 248 ACGGEVIVNNVIPKHLESISAKLIEMGAEV 277
>BCHN_RHOS4 (Q9RFD4) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 428 Score = 29.3 bits (64), Expect = 8.4 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = -1 Query: 544 GLGPVDCNGQHHAEGAPGV 488 G+GPV C HHA APGV Sbjct: 198 GIGPVRCLPAHHAAEAPGV 216
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 29.3 bits (64), Expect = 8.4 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Frame = -2 Query: 555 LSWTVWDRWTVTG---NITLRELLEWLKEK-GLNAYSISCGTSLLYNSMFPRHK--ERLD 394 L WT WDR V TL LL L+E+ GL + G++LLY + + K + L Sbjct: 908 LKWTSWDRLKVPAGQPERTLESLLAHLQEQHGLRVRILLHGSALLYAAGWSPEKQAQHLP 967 Query: 393 RKVVDVAREV 364 +V ++ +++ Sbjct: 968 LRVTELVQQL 977 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,803,196 Number of Sequences: 219361 Number of extensions: 1479941 Number of successful extensions: 4661 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4653 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
