ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VGLB_HSV2S (P24994) Glycoprotein B precursor 30 6.2
2COX2_LOCMI (P14573) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) ... 30 6.2
3FLR4_CAEEL (Q9NLA1) Serine/threonine-protein kinase flr-4 (EC 2.... 30 8.1

>VGLB_HSV2S (P24994) Glycoprotein B precursor|
          Length = 885

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 613 LLENKARRAELALYVLPPCRRISMVYIDQPPPSPK 509
           L E KAR  +   YV PP    ++V  +QP P P+
Sbjct: 82  LREIKARDGDATFYVCPPPTGATVVQFEQPRPCPR 116



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>COX2_LOCMI (P14573) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide II)
          Length = 227

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = -2

Query: 345 SYSYLHTLNVLEQSKTHPTPENGLPTSETYTLE-----SIPGL*ELRV---TSKILHPW 193
           SY Y   +NV  +  T+ TPEN L T E   LE     ++P   E+RV    S +LH W
Sbjct: 107 SYEYSDFINV--EFDTYMTPENELNTDEFRLLEVDNRTTLPMNTEVRVLTSASDVLHSW 163



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>FLR4_CAEEL (Q9NLA1) Serine/threonine-protein kinase flr-4 (EC 2.7.11.1)|
           (Fluoride resistant protein 4)
          Length = 570

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 236 PGIDSRVYVSDVGRPFSGVGCVFDCSNTF 322
           P IDS  Y+ D+G+   G  C F   NTF
Sbjct: 35  PSIDSYKYIQDLGKGRFGTVCKFSNGNTF 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,926,991
Number of Sequences: 219361
Number of extensions: 2632490
Number of successful extensions: 6351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6345
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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