| Clone Name | rbags6n17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY323206.1| Hordeum vulgare SUSIBA2 (susiba2) mRNA, complete cds Length = 2354 Score = 196 bits (99), Expect = 7e-47 Identities = 132/139 (94%), Gaps = 3/139 (2%) Strand = Plus / Plus Query: 98 agatcatgcatcgttgagccgcttggtgggcgagacggcctcgatggcctccccgagcgg 157 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 1 agatcatgcatcgttgagccgcttggtgggcgagacggc-tcgatgggctccccgagcgg 59 Query: 158 ccacgcggcctcgatgaagtactccccgtgcttcaccttctgcgccacggtgatctcctt 217 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 60 gcacgcgggctcgatgaagtactccccgtgcttca-cttctgcgccacggtgatctcctt 118 Query: 218 -ggtcggctccaagccgaa 235 |||||| ||||||||||| Sbjct: 119 gggtcgggtccaagccgaa 137
>emb|AJ250665.1|HVU250665 Hordeum vulgare partial mRNA for putative DCINA-induced protein, clone BCI-9 Length = 281 Score = 107 bits (54), Expect = 5e-20 Identities = 68/72 (94%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 19 catacaaccattggngnatgcccttactgcgcgagctagggccggnttagcaatcatatc 78 ||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 71 catacaatcattggag-atgcccttactgcgcgagctagggccggattagcaatcatatc 13 Query: 79 aaccaatactgt 90 |||||||||||| Sbjct: 12 aaccaatactgt 1
>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence Length = 150279 Score = 87.7 bits (44), Expect = 5e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 432 atgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccgttc 491 ||||||||||||||||| |||||||||| |||| |||| || |||||||||||||||| Sbjct: 102757 atgtagtagaagctggatgtgacgtagatctcgtcctgcccaacgccgccgccgccgttc 102698 Query: 492 cacgcgccgttgaaggtgca 511 ||| ||||||||||| |||| Sbjct: 102697 cacacgccgttgaagctgca 102678 Score = 69.9 bits (35), Expect = 1e-08 Identities = 77/91 (84%) Strand = Plus / Minus Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488 |||||||||||||| |||| | |||||||||||| |||| || | ||| ||||||||| Sbjct: 122959 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 122900 Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519 |||||| | ||||||||| ||||||| |||| Sbjct: 122899 ttccacactccgttgaagctgcagttgttgg 122869 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 585 ccttgcggtgctgctatggcgtcgtattgctccccgttgtaggtgtatttgcc 637 ||||| |||||||| || || ||||| |||||||||||||||||| ||||||| Sbjct: 102604 ccttgtggtgctgccattgcttcgtactgctccccgttgtaggtgaatttgcc 102552 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 156 ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 198 |||||||| || |||||| ||||||| || ||||||||||||| Sbjct: 123493 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 123451 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 477 ccgccgccgccgttccacgcgccgttgaaggtgcagttcttgg 519 ||||| || |||||||| ||||||||||| |||||||||||| Sbjct: 75081 ccgccaccaccgttccagacgccgttgaagctgcagttcttgg 75039
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 87.7 bits (44), Expect = 5e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 432 atgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccgttc 491 ||||||||||||||||| |||||||||| |||| |||| || |||||||||||||||| Sbjct: 1206951 atgtagtagaagctggatgtgacgtagatctcgtcctgcccaacgccgccgccgccgttc 1206892 Query: 492 cacgcgccgttgaaggtgca 511 ||| ||||||||||| |||| Sbjct: 1206891 cacacgccgttgaagctgca 1206872 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 13850864 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 13850923 Query: 513 ttc 515 ||| Sbjct: 13850924 ttc 13850926 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 13814382 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 13814441 Query: 513 ttc 515 ||| Sbjct: 13814442 ttc 13814444 Score = 69.9 bits (35), Expect = 1e-08 Identities = 77/91 (84%) Strand = Plus / Minus Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488 |||||||||||||| |||| | |||||||||||| |||| || | ||| ||||||||| Sbjct: 1227153 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 1227094 Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519 |||||| | ||||||||| ||||||| |||| Sbjct: 1227093 ttccacactccgttgaagctgcagttgttgg 1227063 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 585 ccttgcggtgctgctatggcgtcgtattgctccccgttgtaggtgtatttgcc 637 ||||| |||||||| || || ||||| |||||||||||||||||| ||||||| Sbjct: 1206798 ccttgtggtgctgccattgcttcgtactgctccccgttgtaggtgaatttgcc 1206746 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 156 ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 198 |||||||| || |||||| ||||||| || ||||||||||||| Sbjct: 1227687 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 1227645 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 477 ccgccgccgccgttccacgcgccgttgaaggtgcagttcttgg 519 ||||| || |||||||| ||||||||||| |||||||||||| Sbjct: 1179275 ccgccaccaccgttccagacgccgttgaagctgcagttcttgg 1179233
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 87.7 bits (44), Expect = 5e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 432 atgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccgttc 491 ||||||||||||||||| |||||||||| |||| |||| || |||||||||||||||| Sbjct: 1204672 atgtagtagaagctggatgtgacgtagatctcgtcctgcccaacgccgccgccgccgttc 1204613 Query: 492 cacgcgccgttgaaggtgca 511 ||| ||||||||||| |||| Sbjct: 1204612 cacacgccgttgaagctgca 1204593 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 13932866 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 13932925 Query: 513 ttc 515 ||| Sbjct: 13932926 ttc 13932928 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 13896384 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 13896443 Query: 513 ttc 515 ||| Sbjct: 13896444 ttc 13896446 Score = 69.9 bits (35), Expect = 1e-08 Identities = 77/91 (84%) Strand = Plus / Minus Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488 |||||||||||||| |||| | |||||||||||| |||| || | ||| ||||||||| Sbjct: 1224874 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 1224815 Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519 |||||| | ||||||||| ||||||| |||| Sbjct: 1224814 ttccacactccgttgaagctgcagttgttgg 1224784 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 585 ccttgcggtgctgctatggcgtcgtattgctccccgttgtaggtgtatttgcc 637 ||||| |||||||| || || ||||| |||||||||||||||||| ||||||| Sbjct: 1204519 ccttgtggtgctgccattgcttcgtactgctccccgttgtaggtgaatttgcc 1204467 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 156 ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 198 |||||||| || |||||| ||||||| || ||||||||||||| Sbjct: 1225408 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 1225366 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 477 ccgccgccgccgttccacgcgccgttgaaggtgcagttcttgg 519 ||||| || |||||||| ||||||||||| |||||||||||| Sbjct: 1176996 ccgccaccaccgttccagacgccgttgaagctgcagttcttgg 1176954
>gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0096A19 map near 50283S, complete sequence Length = 139969 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 88423 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 88482 Query: 513 ttc 515 ||| Sbjct: 88483 ttc 88485 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 51941 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 52000 Query: 513 ttc 515 ||| Sbjct: 52001 ttc 52003
>dbj|AK119786.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F08, full insert sequence Length = 1689 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 1189 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 1130 Query: 513 ttc 515 ||| Sbjct: 1129 ttc 1127
>dbj|AK104429.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C10, full insert sequence Length = 1686 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 1186 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 1127 Query: 513 ttc 515 ||| Sbjct: 1126 ttc 1124
>dbj|AK104082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C02, full insert sequence Length = 1686 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 1186 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 1127 Query: 513 ttc 515 ||| Sbjct: 1126 ttc 1124
>dbj|AK069955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036G10, full insert sequence Length = 1691 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 453 acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512 |||||||| |||||| ||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct: 1191 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 1132 Query: 513 ttc 515 ||| Sbjct: 1131 ttc 1129
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 69.9 bits (35), Expect = 1e-08 Identities = 77/91 (84%) Strand = Plus / Minus Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488 |||||||||||||| |||| | |||||||||||| |||| || | ||| ||||||||| Sbjct: 1132348 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 1132289 Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519 |||||| | ||||||||| ||||||| |||| Sbjct: 1132288 ttccacactccgttgaagctgcagttgttgg 1132258
>dbj|AK100760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119H05, full insert sequence Length = 1834 Score = 69.9 bits (35), Expect = 1e-08 Identities = 77/91 (84%) Strand = Plus / Minus Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488 |||||||||||||| |||| | |||||||||||| |||| || | ||| ||||||||| Sbjct: 882 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 823 Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519 |||||| | ||||||||| ||||||| |||| Sbjct: 822 ttccacactccgttgaagctgcagttgttgg 792
>dbj|AK059453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B11, full insert sequence Length = 735 Score = 69.9 bits (35), Expect = 1e-08 Identities = 77/91 (84%) Strand = Plus / Minus Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488 |||||||||||||| |||| | |||||||||||| |||| || | ||| ||||||||| Sbjct: 321 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 262 Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519 |||||| | ||||||||| ||||||| |||| Sbjct: 261 ttccacactccgttgaagctgcagttgttgg 231 Score = 46.1 bits (23), Expect = 0.16 Identities = 38/43 (88%) Strand = Plus / Minus Query: 156 ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 198 |||||||| || |||||| ||||||| || ||||||||||||| Sbjct: 588 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 546
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 69.9 bits (35), Expect = 1e-08 Identities = 77/91 (84%) Strand = Plus / Minus Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488 |||||||||||||| |||| | |||||||||||| |||| || | ||| ||||||||| Sbjct: 1132348 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 1132289 Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519 |||||| | ||||||||| ||||||| |||| Sbjct: 1132288 ttccacactccgttgaagctgcagttgttgg 1132258
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 69.9 bits (35), Expect = 1e-08 Identities = 77/91 (84%) Strand = Plus / Minus Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488 |||||||||||||| |||| | |||||||||||| |||| || | ||| ||||||||| Sbjct: 71331 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 71272 Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519 |||||| | ||||||||| ||||||| |||| Sbjct: 71271 ttccacactccgttgaagctgcagttgttgg 71241
>gb|BT018406.1| Zea mays clone EL01N0326A05.d mRNA sequence Length = 1460 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 618 ccgttgtaggtgtatttgccatcgtatccgcgcagcacgcagtagctgactggtccgttt 677 ||||||||||| ||||| ||| |||||||||||| |||| |||||| ||||||||| Sbjct: 677 ccgttgtaggtatatttaccactaaatccgcgcagcatgcaggagctgaatggtccgttc 618 Query: 678 ttgg 681 |||| Sbjct: 617 ttgg 614
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 182 cccgtgcttcaccttctgcgccacggt 208 ||||| ||||||||||||||||||||| Sbjct: 1813551 cccgtccttcaccttctgcgccacggt 1813577
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 234 aacccgtccacgagcagggagta 256 ||||||||||||||||||||||| Sbjct: 2443436 aacccgtccacgagcagggagta 2443458
>emb|AL354815.10| Human DNA sequence from clone RP11-760M1 on chromosome 13 Contains three novel genes, the 5' end of the TNFRSF19 gene for tumour necrosis factor receptor superfamily member 19 and two CpG islands, complete sequence Length = 168663 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 318 gccttggcctccaggaagctca 339 |||||||||||||||||||||| Sbjct: 53221 gccttggcctccaggaagctca 53200
>gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complete sequence Length = 165158 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Plus Query: 463 cggcctggccggggccgccgccgccg 488 ||||| |||||||||||||||||||| Sbjct: 75678 cggccgggccggggccgccgccgccg 75703
>gb|AC123886.7| Homo sapiens BAC clone RP11-404O21 from 2, complete sequence Length = 162447 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Plus Query: 463 cggcctggccggggccgccgccgccg 488 ||||| |||||||||||||||||||| Sbjct: 42199 cggccgggccggggccgccgccgccg 42224
>gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OABb-433A1, complete sequence Length = 161653 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 469 ggccggggccgccgccgccgt 489 ||||||||||||||||||||| Sbjct: 73254 ggccggggccgccgccgccgt 73274
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 cctggccggggccgccgccgc 486 ||||||||||||||||||||| Sbjct: 780441 cctggccggggccgccgccgc 780421
>gb|AC079852.3| Oryza sativa chromosome 10 clone OSJNBa0034A02, complete sequence Length = 185904 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 gggccgccgccgccgttccac 494 ||||||||||||||||||||| Sbjct: 79572 gggccgccgccgccgttccac 79592
>gb|U82749.1|MAU82749 Mycobacterium avium glyceraldehyde-3-phosphate dehydrogenase homolog (gapdh) gene, complete cds; and phosphoglycerate kinase gene, partial cds Length = 2530 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 352 cctcggcggcggccctgaacgccgc 376 |||||||||||||| |||||||||| Sbjct: 1158 cctcggcggcggccttgaacgccgc 1134
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 gggccgccgccgccgttccac 494 ||||||||||||||||||||| Sbjct: 2576692 gggccgccgccgccgttccac 2576712
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 atctcctcggcggcggccctg 368 ||||||||||||||||||||| Sbjct: 5509779 atctcctcggcggcggccctg 5509759
>gb|AY111776.1| Zea mays CL39796_1 mRNA sequence Length = 952 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 477 ccgccgccgccgttccacgcgccgttgaaggtgcagttctt 517 ||||||||||| ||||| ||| ||||||||||||||||| Sbjct: 771 ccgccgccgccattccatatgccattgaaggtgcagttctt 811 Score = 42.1 bits (21), Expect = 2.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 255 tactggtagacaaggtccatgcagatgtagggc 287 ||||||||| ||||||||||||| | ||||||| Sbjct: 549 tactggtaggcaaggtccatgcacaggtagggc 581
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 gggccgccgccgccgttccac 494 ||||||||||||||||||||| Sbjct: 2576643 gggccgccgccgccgttccac 2576663 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,851,653 Number of Sequences: 3902068 Number of extensions: 4851653 Number of successful extensions: 118487 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117017 Number of HSP's gapped (non-prelim): 1467 length of query: 732 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 709 effective length of database: 17,143,297,704 effective search space: 12154598072136 effective search space used: 12154598072136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)