ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags6n17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY323206.1| Hordeum vulgare SUSIBA2 (susiba2) mRNA, complete cds 196 7e-47
2emb|AJ250665.1|HVU250665 Hordeum vulgare partial mRNA for putati... 107 5e-20
3gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome... 88 5e-14
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 88 5e-14
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 88 5e-14
6gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome... 78 5e-11
7dbj|AK119786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-11
8dbj|AK104429.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-11
9dbj|AK104082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-11
10dbj|AK069955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-11
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
12dbj|AK100760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
13dbj|AK059453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
14gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 70 1e-08
15emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 70 1e-08
16gb|BT018406.1| Zea mays clone EL01N0326A05.d mRNA sequence 48 0.041
17gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 46 0.16
18gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 46 0.16
19emb|AL354815.10| Human DNA sequence from clone RP11-760M1 on chr... 44 0.64
20gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complet... 44 0.64
21gb|AC123886.7| Homo sapiens BAC clone RP11-404O21 from 2, comple... 44 0.64
22gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 2.5
23gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 2.5
24gb|AC079852.3| Oryza sativa chromosome 10 clone OSJNBa0034A02, c... 42 2.5
25gb|U82749.1|MAU82749 Mycobacterium avium glyceraldehyde-3-phosph... 42 2.5
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
27dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 2.5
28gb|AY111776.1| Zea mays CL39796_1 mRNA sequence 42 2.5
29gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5

>gb|AY323206.1| Hordeum vulgare SUSIBA2 (susiba2) mRNA, complete cds
          Length = 2354

 Score =  196 bits (99), Expect = 7e-47
 Identities = 132/139 (94%), Gaps = 3/139 (2%)
 Strand = Plus / Plus

                                                                       
Query: 98  agatcatgcatcgttgagccgcttggtgggcgagacggcctcgatggcctccccgagcgg 157
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 1   agatcatgcatcgttgagccgcttggtgggcgagacggc-tcgatgggctccccgagcgg 59

                                                                       
Query: 158 ccacgcggcctcgatgaagtactccccgtgcttcaccttctgcgccacggtgatctcctt 217
            ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 60  gcacgcgggctcgatgaagtactccccgtgcttca-cttctgcgccacggtgatctcctt 118

                              
Query: 218 -ggtcggctccaagccgaa 235
            |||||| |||||||||||
Sbjct: 119 gggtcgggtccaagccgaa 137



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>emb|AJ250665.1|HVU250665 Hordeum vulgare partial mRNA for putative DCINA-induced protein,
          clone BCI-9
          Length = 281

 Score =  107 bits (54), Expect = 5e-20
 Identities = 68/72 (94%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                      
Query: 19 catacaaccattggngnatgcccttactgcgcgagctagggccggnttagcaatcatatc 78
          ||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 71 catacaatcattggag-atgcccttactgcgcgagctagggccggattagcaatcatatc 13

                      
Query: 79 aaccaatactgt 90
          ||||||||||||
Sbjct: 12 aaccaatactgt 1



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>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18,
              complete sequence
          Length = 150279

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                          
Query: 432    atgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccgttc 491
              ||||||||||||||||| |||||||||| |||| |||| ||   ||||||||||||||||
Sbjct: 102757 atgtagtagaagctggatgtgacgtagatctcgtcctgcccaacgccgccgccgccgttc 102698

                                  
Query: 492    cacgcgccgttgaaggtgca 511
              ||| ||||||||||| ||||
Sbjct: 102697 cacacgccgttgaagctgca 102678



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                          
Query: 429    gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488
              |||||||||||||| ||||  |  |||||||||||| |||| || | ||| |||||||||
Sbjct: 122959 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 122900

                                             
Query: 489    ttccacgcgccgttgaaggtgcagttcttgg 519
              |||||| | ||||||||| ||||||| ||||
Sbjct: 122899 ttccacactccgttgaagctgcagttgttgg 122869



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 585    ccttgcggtgctgctatggcgtcgtattgctccccgttgtaggtgtatttgcc 637
              ||||| |||||||| || || ||||| |||||||||||||||||| |||||||
Sbjct: 102604 ccttgtggtgctgccattgcttcgtactgctccccgttgtaggtgaatttgcc 102552



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 156    ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 198
              |||||||| || |||||| ||||||| || |||||||||||||
Sbjct: 123493 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 123451



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 477   ccgccgccgccgttccacgcgccgttgaaggtgcagttcttgg 519
             ||||| || ||||||||  ||||||||||| ||||||||||||
Sbjct: 75081 ccgccaccaccgttccagacgccgttgaagctgcagttcttgg 75039



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                           
Query: 432     atgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccgttc 491
               ||||||||||||||||| |||||||||| |||| |||| ||   ||||||||||||||||
Sbjct: 1206951 atgtagtagaagctggatgtgacgtagatctcgtcctgcccaacgccgccgccgccgttc 1206892

                                   
Query: 492     cacgcgccgttgaaggtgca 511
               ||| ||||||||||| ||||
Sbjct: 1206891 cacacgccgttgaagctgca 1206872



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 453      acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
                |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 13850864 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 13850923

                   
Query: 513      ttc 515
                |||
Sbjct: 13850924 ttc 13850926



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 453      acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
                |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 13814382 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 13814441

                   
Query: 513      ttc 515
                |||
Sbjct: 13814442 ttc 13814444



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                           
Query: 429     gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488
               |||||||||||||| ||||  |  |||||||||||| |||| || | ||| |||||||||
Sbjct: 1227153 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 1227094

                                              
Query: 489     ttccacgcgccgttgaaggtgcagttcttgg 519
               |||||| | ||||||||| ||||||| ||||
Sbjct: 1227093 ttccacactccgttgaagctgcagttgttgg 1227063



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 585     ccttgcggtgctgctatggcgtcgtattgctccccgttgtaggtgtatttgcc 637
               ||||| |||||||| || || ||||| |||||||||||||||||| |||||||
Sbjct: 1206798 ccttgtggtgctgccattgcttcgtactgctccccgttgtaggtgaatttgcc 1206746



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 156     ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 198
               |||||||| || |||||| ||||||| || |||||||||||||
Sbjct: 1227687 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 1227645



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 477     ccgccgccgccgttccacgcgccgttgaaggtgcagttcttgg 519
               ||||| || ||||||||  ||||||||||| ||||||||||||
Sbjct: 1179275 ccgccaccaccgttccagacgccgttgaagctgcagttcttgg 1179233



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                           
Query: 432     atgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccgttc 491
               ||||||||||||||||| |||||||||| |||| |||| ||   ||||||||||||||||
Sbjct: 1204672 atgtagtagaagctggatgtgacgtagatctcgtcctgcccaacgccgccgccgccgttc 1204613

                                   
Query: 492     cacgcgccgttgaaggtgca 511
               ||| ||||||||||| ||||
Sbjct: 1204612 cacacgccgttgaagctgca 1204593



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 453      acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
                |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 13932866 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 13932925

                   
Query: 513      ttc 515
                |||
Sbjct: 13932926 ttc 13932928



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 453      acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
                |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 13896384 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 13896443

                   
Query: 513      ttc 515
                |||
Sbjct: 13896444 ttc 13896446



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                           
Query: 429     gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488
               |||||||||||||| ||||  |  |||||||||||| |||| || | ||| |||||||||
Sbjct: 1224874 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 1224815

                                              
Query: 489     ttccacgcgccgttgaaggtgcagttcttgg 519
               |||||| | ||||||||| ||||||| ||||
Sbjct: 1224814 ttccacactccgttgaagctgcagttgttgg 1224784



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 585     ccttgcggtgctgctatggcgtcgtattgctccccgttgtaggtgtatttgcc 637
               ||||| |||||||| || || ||||| |||||||||||||||||| |||||||
Sbjct: 1204519 ccttgtggtgctgccattgcttcgtactgctccccgttgtaggtgaatttgcc 1204467



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 156     ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 198
               |||||||| || |||||| ||||||| || |||||||||||||
Sbjct: 1225408 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 1225366



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 477     ccgccgccgccgttccacgcgccgttgaaggtgcagttcttgg 519
               ||||| || ||||||||  ||||||||||| ||||||||||||
Sbjct: 1176996 ccgccaccaccgttccagacgccgttgaagctgcagttcttgg 1176954



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>gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0096A19 map near 50283S, complete sequence
          Length = 139969

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 453   acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
             |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 88423 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 88482

                
Query: 513   ttc 515
             |||
Sbjct: 88483 ttc 88485



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 453   acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
             |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 51941 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 52000

                
Query: 513   ttc 515
             |||
Sbjct: 52001 ttc 52003



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>dbj|AK119786.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F08, full
            insert sequence
          Length = 1689

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                        
Query: 453  acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
            |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 1189 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 1130

               
Query: 513  ttc 515
            |||
Sbjct: 1129 ttc 1127



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>dbj|AK104429.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C10, full
            insert sequence
          Length = 1686

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                        
Query: 453  acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
            |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 1186 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 1127

               
Query: 513  ttc 515
            |||
Sbjct: 1126 ttc 1124



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>dbj|AK104082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C02, full
            insert sequence
          Length = 1686

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                        
Query: 453  acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
            |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 1186 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 1127

               
Query: 513  ttc 515
            |||
Sbjct: 1126 ttc 1124



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>dbj|AK069955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036G10, full
            insert sequence
          Length = 1691

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                        
Query: 453  acgtagagctcggcctggccggggccgccgccgccgttccacgcgccgttgaaggtgcag 512
            |||||||| ||||||  ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct: 1191 acgtagaggtcggccatgccggcgccgccgccgccgttccacacgccgttgaagctgcag 1132

               
Query: 513  ttc 515
            |||
Sbjct: 1131 ttc 1129



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                           
Query: 429     gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488
               |||||||||||||| ||||  |  |||||||||||| |||| || | ||| |||||||||
Sbjct: 1132348 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 1132289

                                              
Query: 489     ttccacgcgccgttgaaggtgcagttcttgg 519
               |||||| | ||||||||| ||||||| ||||
Sbjct: 1132288 ttccacactccgttgaagctgcagttgttgg 1132258



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>dbj|AK100760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119H05, full
           insert sequence
          Length = 1834

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                       
Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488
           |||||||||||||| ||||  |  |||||||||||| |||| || | ||| |||||||||
Sbjct: 882 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 823

                                          
Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519
           |||||| | ||||||||| ||||||| ||||
Sbjct: 822 ttccacactccgttgaagctgcagttgttgg 792



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>dbj|AK059453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B11, full
           insert sequence
          Length = 735

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                       
Query: 429 gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488
           |||||||||||||| ||||  |  |||||||||||| |||| || | ||| |||||||||
Sbjct: 321 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 262

                                          
Query: 489 ttccacgcgccgttgaaggtgcagttcttgg 519
           |||||| | ||||||||| ||||||| ||||
Sbjct: 261 ttccacactccgttgaagctgcagttgttgg 231



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 156 ggccacgcggcctcgatgaagtactccccgtgcttcaccttct 198
           |||||||| || |||||| ||||||| || |||||||||||||
Sbjct: 588 ggccacgccgcttcgatgtagtactctccatgcttcaccttct 546



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                           
Query: 429     gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488
               |||||||||||||| ||||  |  |||||||||||| |||| || | ||| |||||||||
Sbjct: 1132348 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 1132289

                                              
Query: 489     ttccacgcgccgttgaaggtgcagttcttgg 519
               |||||| | ||||||||| ||||||| ||||
Sbjct: 1132288 ttccacactccgttgaagctgcagttgttgg 1132258



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>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                         
Query: 429   gccatgtagtagaagctggaggtgacgtagagctcggcctggccggggccgccgccgccg 488
             |||||||||||||| ||||  |  |||||||||||| |||| || | ||| |||||||||
Sbjct: 71331 gccatgtagtagaaactggtcgcaacgtagagctcgtcctgcccagcgccaccgccgccg 71272

                                            
Query: 489   ttccacgcgccgttgaaggtgcagttcttgg 519
             |||||| | ||||||||| ||||||| ||||
Sbjct: 71271 ttccacactccgttgaagctgcagttgttgg 71241



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>gb|BT018406.1| Zea mays clone EL01N0326A05.d mRNA sequence
          Length = 1460

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 618 ccgttgtaggtgtatttgccatcgtatccgcgcagcacgcagtagctgactggtccgttt 677
           ||||||||||| ||||| |||    |||||||||||| |||| |||||| ||||||||| 
Sbjct: 677 ccgttgtaggtatatttaccactaaatccgcgcagcatgcaggagctgaatggtccgttc 618

               
Query: 678 ttgg 681
           ||||
Sbjct: 617 ttgg 614



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 182     cccgtgcttcaccttctgcgccacggt 208
               ||||| |||||||||||||||||||||
Sbjct: 1813551 cccgtccttcaccttctgcgccacggt 1813577



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 234     aacccgtccacgagcagggagta 256
               |||||||||||||||||||||||
Sbjct: 2443436 aacccgtccacgagcagggagta 2443458



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>emb|AL354815.10| Human DNA sequence from clone RP11-760M1 on chromosome 13 Contains
             three novel genes, the 5' end of the TNFRSF19 gene for
             tumour necrosis factor receptor superfamily member 19 and
             two CpG islands, complete sequence
          Length = 168663

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 318   gccttggcctccaggaagctca 339
             ||||||||||||||||||||||
Sbjct: 53221 gccttggcctccaggaagctca 53200



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>gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complete sequence
          Length = 165158

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 463   cggcctggccggggccgccgccgccg 488
             ||||| ||||||||||||||||||||
Sbjct: 75678 cggccgggccggggccgccgccgccg 75703



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>gb|AC123886.7| Homo sapiens BAC clone RP11-404O21 from 2, complete sequence
          Length = 162447

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 463   cggcctggccggggccgccgccgccg 488
             ||||| ||||||||||||||||||||
Sbjct: 42199 cggccgggccggggccgccgccgccg 42224



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>gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OABb-433A1, complete
             sequence
          Length = 161653

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 469   ggccggggccgccgccgccgt 489
             |||||||||||||||||||||
Sbjct: 73254 ggccggggccgccgccgccgt 73274



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 466    cctggccggggccgccgccgc 486
              |||||||||||||||||||||
Sbjct: 780441 cctggccggggccgccgccgc 780421



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>gb|AC079852.3| Oryza sativa chromosome 10 clone OSJNBa0034A02, complete sequence
          Length = 185904

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 474   gggccgccgccgccgttccac 494
             |||||||||||||||||||||
Sbjct: 79572 gggccgccgccgccgttccac 79592



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>gb|U82749.1|MAU82749 Mycobacterium avium glyceraldehyde-3-phosphate dehydrogenase homolog
            (gapdh) gene, complete cds; and phosphoglycerate kinase
            gene, partial cds
          Length = 2530

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 352  cctcggcggcggccctgaacgccgc 376
            |||||||||||||| ||||||||||
Sbjct: 1158 cctcggcggcggccttgaacgccgc 1134



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 474     gggccgccgccgccgttccac 494
               |||||||||||||||||||||
Sbjct: 2576692 gggccgccgccgccgttccac 2576712



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 348     atctcctcggcggcggccctg 368
               |||||||||||||||||||||
Sbjct: 5509779 atctcctcggcggcggccctg 5509759



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>gb|AY111776.1| Zea mays CL39796_1 mRNA sequence
          Length = 952

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 477 ccgccgccgccgttccacgcgccgttgaaggtgcagttctt 517
           ||||||||||| |||||   ||| |||||||||||||||||
Sbjct: 771 ccgccgccgccattccatatgccattgaaggtgcagttctt 811



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 255 tactggtagacaaggtccatgcagatgtagggc 287
           ||||||||| ||||||||||||| | |||||||
Sbjct: 549 tactggtaggcaaggtccatgcacaggtagggc 581



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 474     gggccgccgccgccgttccac 494
               |||||||||||||||||||||
Sbjct: 2576643 gggccgccgccgccgttccac 2576663


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,851,653
Number of Sequences: 3902068
Number of extensions: 4851653
Number of successful extensions: 118487
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117017
Number of HSP's gapped (non-prelim): 1467
length of query: 732
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 709
effective length of database: 17,143,297,704
effective search space: 12154598072136
effective search space used: 12154598072136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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