ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7c11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466265.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1187 Score = 115 bits (58), Expect = 7e-23 Identities = 103/118 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 975 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 916 Query: 208 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 265 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||| Sbjct: 915 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggag 858
>ref|XM_507487.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.5 mRNA Length = 1235 Score = 115 bits (58), Expect = 7e-23 Identities = 103/118 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 978 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 919 Query: 208 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 265 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||| Sbjct: 918 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggag 861
>ref|XM_506829.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.5 mRNA Length = 1267 Score = 115 bits (58), Expect = 7e-23 Identities = 103/118 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 1007 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 948 Query: 208 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 265 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||| Sbjct: 947 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggag 890
>gb|AY224558.1| Oryza sativa (japonica cultivar-group) isolate 29037 gamma hydroxybutyrate dehydrogenase-like protein mRNA, complete cds Length = 882 Score = 115 bits (58), Expect = 7e-23 Identities = 103/118 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 873 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 814 Query: 208 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 265 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||| Sbjct: 813 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggag 756
>dbj|AB110167.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 12FPR024 Length = 1163 Score = 115 bits (58), Expect = 7e-23 Identities = 103/118 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 956 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 897 Query: 208 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 265 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||| Sbjct: 896 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggag 839
>dbj|AK109435.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H04, full insert sequence Length = 1220 Score = 115 bits (58), Expect = 7e-23 Identities = 103/118 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 1004 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 945 Query: 208 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 265 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||| Sbjct: 944 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggag 887
>dbj|AK104168.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E09, full insert sequence Length = 1187 Score = 115 bits (58), Expect = 7e-23 Identities = 103/118 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 975 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 916 Query: 208 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 265 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||| Sbjct: 915 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggag 858
>dbj|AK071800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114G06, full insert sequence Length = 1235 Score = 115 bits (58), Expect = 7e-23 Identities = 103/118 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 978 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 919 Query: 208 tcccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcatggag 265 |||||||||||||||||||||||| ||||| || | ||||||||| |||||||||||| Sbjct: 918 tcccaagcttcttgctttcttgaacgcctcgttggaagcagctgccactggcatggag 861
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 89.7 bits (45), Expect = 4e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 21367703 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 21367644 Query: 208 tcccaagcttcttgctttcttgaatgcct 236 |||||||||||||||||||||||| |||| Sbjct: 21367643 tcccaagcttcttgctttcttgaacgcct 21367615
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1712_E04 Length = 110098 Score = 89.7 bits (45), Expect = 4e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 148 gcctgaaccacctgtgcctttcagcacctcgtgcaccgcagaaaaatccaggtcgccaag 207 |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||||||| || || Sbjct: 27656 gcctgagccacctgcgcccttcagtacctcgtaaaccgctgagaaatccaggtcccctag 27597 Query: 208 tcccaagcttcttgctttcttgaatgcct 236 |||||||||||||||||||||||| |||| Sbjct: 27596 tcccaagcttcttgctttcttgaacgcct 27568
>gb|BT012834.1| Lycopersicon esculentum clone 113891R, mRNA sequence Length = 1105 Score = 73.8 bits (37), Expect = 2e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 209 cccaagcttcttgctttcttgaatgcctcattagcagcagctgcgactggcat 261 |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct: 845 cccaagctccttgccttcttgaatgcctcatttgcagcagctgcaactggcat 793
>gb|AC023194.9| Homo sapiens, clone RP11-216N21, complete sequence Length = 175834 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 ccaagtcccaagcttcttgctttc 226 |||||||||||| ||||||||||| Sbjct: 41834 ccaagtcccaagtttcttgctttc 41857
>gb|AF516609.1| Malus x domestica putative disease resistance gene analog NBS-LRR (FRGA-A3) gene, partial cds Length = 519 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 aagcttcttgctttcttgaa 231 |||||||||||||||||||| Sbjct: 68 aagcttcttgctttcttgaa 87
>gb|AY170493.1| Glycine max Rga332 disease resistance protein-like protein pseudogene, partial sequence Length = 457 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 aagcttcttgctttcttgaa 231 |||||||||||||||||||| Sbjct: 33 aagcttcttgctttcttgaa 52
>gb|AY170483.1| Glycine max Rga37 disease resistance protein-like protein pseudogene, partial sequence Length = 462 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 aagcttcttgctttcttgaa 231 |||||||||||||||||||| Sbjct: 33 aagcttcttgctttcttgaa 52
>gb|AY170480.1| Glycine max Rga32 disease resistance protein-like protein pseudogene, partial sequence Length = 462 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 aagcttcttgctttcttgaa 231 |||||||||||||||||||| Sbjct: 33 aagcttcttgctttcttgaa 52
>gb|AF175394.1|AF175394 Glycine max resistance protein LM12 mRNA, partial cds Length = 1314 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 aagcttcttgctttcttgaa 231 |||||||||||||||||||| Sbjct: 716 aagcttcttgctttcttgaa 735
>gb|AC007544.4| Homo sapiens 12 BAC RP11-12D15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 119034 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 caagaatatctgcatgccca 106 |||||||||||||||||||| Sbjct: 33665 caagaatatctgcatgccca 33646
>gb|AF071302.1|AF071302 HIV-1 isolate I3106-c from The Netherlands, gag protein (gag) gene, partial cds Length = 738 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 agcagcagctgcgactggca 260 |||||||||||||||||||| Sbjct: 285 agcagcagctgcgactggca 304
>gb|U56888.1|HIVU56888 Human immunodeficiency virus type 1 gag polyprotein (gag) gene, partial cds Length = 402 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 agcagcagctgcgactggca 260 |||||||||||||||||||| Sbjct: 351 agcagcagctgcgactggca 370
>gb|U55805.1|GMU55805 Glycine max clone RLG3 disease resistance protein homolog gene, partial cds Length = 512 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 aagcttcttgctttcttgaa 231 |||||||||||||||||||| Sbjct: 62 aagcttcttgctttcttgaa 81 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,002,914 Number of Sequences: 3902068 Number of extensions: 2002914 Number of successful extensions: 36253 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36225 Number of HSP's gapped (non-prelim): 28 length of query: 265 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 243 effective length of database: 17,147,199,772 effective search space: 4166769544596 effective search space used: 4166769544596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
