| Clone Name | rbags6n10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H02, full insert sequence Length = 2846 Score = 228 bits (115), Expect = 2e-56 Identities = 352/431 (81%) Strand = Plus / Minus Query: 201 ggacgagagaaaacaacctggtaatctccaattgctcgtgacttgaaaccagccgcagag 260 ||||||||||| |||| |||||| ||||||| || | || || ||||| || || || Sbjct: 2638 ggacgagagaatacaatctggtagtctccaagtgtcctggatttaaaaccggctgcgcag 2579 Query: 261 aatatgaggtagtactcccatatacggaggaacctttcatcaaagcccagggccaaaact 320 |||||| |||||||||||| |||| | |||| | |||||||||||||||||||||| | Sbjct: 2578 tatatgaaatagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaatt 2519 Query: 321 tggtctttgttggccatgaagttgtccctccagtgcatcagagttgtgtagtaattgggc 380 | ||||| |||||||||||||||||||||||| | ||||||||||| || |||| | | Sbjct: 2518 ttatctttattggccatgaagttgtccctccagcgtatcagagttgtataataatggtac 2459 Query: 381 ccaatattctcgacatgctctatgcagaaccttgatgacgcggtcatggcagacattata 440 ||||||||||| || ||||| ||||||| |||||||| || | ||||||||| |||| Sbjct: 2458 ccaatattctcaacgtgctcaatgcagagccttgatgcagcagacatggcagatgttatc 2399 Query: 441 cgggccaaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctggcctt 500 || | || |||||||||||| ||||||||||||||||| ||||| || ||||||| ||| Sbjct: 2398 cgagtcagagaaggaaggcatccaccagggaatatgtattctttaataaagtctgagctt 2339 Query: 501 tttctgtattgctcgtaccgttcctctggaactgagatgaactggaggaccaatatccca 560 | | ||| | || ||||||||||| |||| |||||| |||||| ||| ||||| ||| Sbjct: 2338 ctccggtactcatcataccgttcctccggaattgagataaactgggtgacaaatatgcca 2279 Query: 561 tcttcagccaagtaagactcacagcaagcaaaaaattcgtccatgtattcatggccaaca 620 | ||||||||| ||||||||||| |||| ||||| |||||||||||||| ||||| Sbjct: 2278 ttttcagccaaaagggactcacagcagccaaagaattcatccatgtattcatgaccaact 2219 Query: 621 tgttcaatcat 631 | ||||||||| Sbjct: 2218 tcttcaatcat 2208
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 324 tctttgttggccatgaagttgtccctccagtgcatcagagttgtgtagtaattgggccca 383 ||||| |||||||||||||||||||||||| | ||||||||||| || |||| | |||| Sbjct: 9538995 tctttattggccatgaagttgtccctccagcgtatcagagttgtataataatggtaccca 9538936 Query: 384 atattctcgacatgctctatgc 405 |||||||| || ||||| |||| Sbjct: 9538935 atattctcaacgtgctcaatgc 9538914 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 449 agaaggaaggcaaccaccagggaatatgtactcttttatgaagtctggcctttttctgta 508 |||||||||||| ||||||||||||||||| ||||| || ||||||| ||| | | ||| Sbjct: 9538767 agaaggaaggcatccaccagggaatatgtattctttaataaagtctgagcttctccggta 9538708 Query: 509 ttgctcgtaccgttcctctggaactgagatgaactgga 546 | || ||||||||||| |||| |||||| ||||||| Sbjct: 9538707 ctcatcataccgttcctccggaattgagataaactgga 9538670 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 270 tagtactcccatatacggaggaacctttcatcaaagcccagggccaaaa 318 |||||||||||| |||| | |||| | |||||||||||||||||||||| Sbjct: 9539455 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaa 9539407 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 576 gactcacagcaagcaaaaaattcgtccatgtattcatggccaacatgttcaatcat 631 ||||||||||| |||| ||||| |||||||||||||| ||||| | ||||||||| Sbjct: 9538559 gactcacagcagccaaagaattcatccatgtattcatgaccaacttcttcaatcat 9538504
>dbj|AK111684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169K10, full insert sequence Length = 1367 Score = 75.8 bits (38), Expect = 2e-10 Identities = 326/422 (77%) Strand = Plus / Minus Query: 195 ttgcctggacgagagaaaacaacctggtaatctccaattgctcgtgacttgaaaccagcc 254 ||||| || ||||| || |||| |||||| | ||||| || ||||||||||| ||||| Sbjct: 1119 ttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagct 1060 Query: 255 gcagagaatatgaggtagtactcccatatacggaggaacctttcatcaaagcccagggcc 314 || || |||||| |||||||||||||| |||| |||| | ||||| || ||||||| | Sbjct: 1059 gcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccagggac 1000 Query: 315 aaaacttggtctttgttggccatgaagttgtccctccagtgcatcagagttgtgtagtaa 374 | | ||| |||| |||||||||||||||| |||| | ||||| || | |||||| Sbjct: 999 tttatctcttctctgttagccatgaagttgtcccgccagcgtatcagcgtggggtagtag 940 Query: 375 ttgggcccaatattctcgacatgctctatgcagaaccttgatgacgcggtcatggcagac 434 | | |||||||||||| | ||||| ||||| | ||| || || | || |||||| || Sbjct: 939 tggtacccaatattctccaagtgctcgatgcatagcctcgacgaggtggacatggcggat 880 Query: 435 attatacgggccaaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtct 494 |||| || | ||| || ||||||||||| ||||| |||||||| || || ||||||||| Sbjct: 879 gttatccgagacaaggatggaaggcaacccccaggaaatatgtattccttgatgaagtct 820 Query: 495 ggcctttttctgtattgctcgtaccgttcctctggaactgagatgaactggaggaccaat 554 | || ||||||| ||||||||||| || || | ||||||||||||||||| || Sbjct: 819 gaactccccctgtattcttcgtaccgttcttcagggatggagatgaactggaggacgaac 760 Query: 555 atcccatcttcagccaagtaagactcacagcaagcaaaaaattcgtccatgtattcatgg 614 | ||||| | |||| | |||||| ||||| | || || |||||||||||||||||| Sbjct: 759 aggccatcctgtgccaggagagactcgcagcagccgaagaaatcgtccatgtattcatgg 700 Query: 615 cc 616 || Sbjct: 699 cc 698
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 324 tctttgttggccatgaagttgtccctccagtgcatcagagttgtgtagtaattgggccca 383 ||||| |||||||||||||||||||||||| | ||||||||||| || |||| | |||| Sbjct: 9538880 tctttattggccatgaagttgtccctccagcgtatcagagttgtataataatggtaccca 9538821 Query: 384 atattctcgacatgctctatgc 405 |||||||| || ||||| |||| Sbjct: 9538820 atattctcaacgtgctcaatgc 9538799 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 449 agaaggaaggcaaccaccagggaatatgtactcttttatgaagtctggcctttttctgta 508 |||||||||||| ||||||||||||||||| ||||| || ||||||| ||| | | ||| Sbjct: 9538652 agaaggaaggcatccaccagggaatatgtattctttaataaagtctgagcttctccggta 9538593 Query: 509 ttgctcgtaccgttcctctggaactgagatgaactgga 546 | || ||||||||||| |||| |||||| ||||||| Sbjct: 9538592 ctcatcataccgttcctccggaattgagataaactgga 9538555 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 270 tagtactcccatatacggaggaacctttcatcaaagcccagggccaaaa 318 |||||||||||| |||| | |||| | |||||||||||||||||||||| Sbjct: 9539340 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaa 9539292 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 576 gactcacagcaagcaaaaaattcgtccatgtattcatggccaacatgttcaatcat 631 ||||||||||| |||| ||||| |||||||||||||| ||||| | ||||||||| Sbjct: 9538444 gactcacagcagccaaagaattcatccatgtattcatgaccaacttcttcaatcat 9538389
>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165137 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 324 tctttgttggccatgaagttgtccctccagtgcatcagagttgtgtagtaattgggccca 383 ||||| |||||||||||||||||||||||| | ||||||||||| || |||| | |||| Sbjct: 2306 tctttattggccatgaagttgtccctccagcgtatcagagttgtataataatggtaccca 2247 Query: 384 atattctcgacatgctctatgc 405 |||||||| || ||||| |||| Sbjct: 2246 atattctcaacgtgctcaatgc 2225 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 449 agaaggaaggcaaccaccagggaatatgtactcttttatgaagtctggcctttttctgta 508 |||||||||||| ||||||||||||||||| ||||| || ||||||| ||| | | ||| Sbjct: 2078 agaaggaaggcatccaccagggaatatgtattctttaataaagtctgagcttctccggta 2019 Query: 509 ttgctcgtaccgttcctctggaactgagatgaactgga 546 | || ||||||||||| |||| |||||| ||||||| Sbjct: 2018 ctcatcataccgttcctccggaattgagataaactgga 1981 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 270 tagtactcccatatacggaggaacctttcatcaaagcccagggccaaaa 318 |||||||||||| |||| | |||| | |||||||||||||||||||||| Sbjct: 2766 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaa 2718 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 576 gactcacagcaagcaaaaaattcgtccatgtattcatggccaacatgttcaatcat 631 ||||||||||| |||| ||||| |||||||||||||| ||||| | ||||||||| Sbjct: 1870 gactcacagcagccaaagaattcatccatgtattcatgaccaacttcttcaatcat 1815
>ref|NM_113256.3| Arabidopsis thaliana cyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase AT3G23530 mRNA, complete cds Length = 3148 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct: 2618 aaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctg 2570
>gb|BT000811.1| Arabidopsis thaliana At3g23520 mRNA sequence Length = 3084 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct: 2592 aaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctg 2544
>gb|AY065013.1| Arabidopsis thaliana AT3g23510/MEE5_5 mRNA, complete cds Length = 3149 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct: 2618 aaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctg 2570
>gb|AY064962.1| Arabidopsis thaliana AT3g23510/MEE5_5 mRNA, complete cds Length = 2988 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct: 2537 aaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctg 2489
>gb|BT006344.1| Arabidopsis thaliana At3g23510/MEE5_5 gene, complete cds Length = 2604 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct: 2294 aaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctg 2246
>dbj|AK176391.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-10-D10 Length = 2986 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct: 2526 aaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctg 2478
>dbj|AB023036.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDB19 Length = 90349 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct: 6404 aaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctg 6356
>gb|BT001134.1| Arabidopsis thaliana At3g23510/MEE5_5 mRNA, complete cds Length = 2604 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct: 2294 aaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctg 2246
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 6e-07 Identities = 131/164 (79%) Strand = Plus / Minus Query: 453 ggaaggcaaccaccagggaatatgtactcttttatgaagtctggcctttttctgtattgc 512 ||||||||||| ||||| |||||||| || || |||||||||| || | ||||||| Sbjct: 17064930 ggaaggcaacccccaggaaatatgtattccttgatgaagtctgaactcctcctgtattct 17064871 Query: 513 tcgtaccgttcctctggaactgagatgaactggaggaccaatatcccatcttcagccaag 572 ||||||||||| || || | ||||||||||||||||| || | ||||| | |||| | Sbjct: 17064870 tcgtaccgttcttcagggatggagatgaactggaggacgaacaggccatcctgtgccagg 17064811 Query: 573 taagactcacagcaagcaaaaaattcgtccatgtattcatggcc 616 |||||| ||||| | || || |||||||||||||||||||| Sbjct: 17064810 agagactcgcagcagccgaagaaatcgtccatgtattcatggcc 17064767 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 195 ttgcctggacgagagaaaacaacctggtaatctccaattgctcgtgacttgaaaccagcc 254 ||||| || ||||| || |||| |||||| | ||||| || ||||||||||| ||||| Sbjct: 17066587 ttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagct 17066528 Query: 255 gcagagaatatgaggtagtactcccatatacggaggaacctttcatcaaagcccaggg 312 || || |||||| |||||||||||||| |||| |||| | ||||| || ||||||| Sbjct: 17066527 gcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 17066470 Score = 40.1 bits (20), Expect = 8.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 328 tgttggccatgaagttgtccctccagtgcatcagagttgtgtagtaattgggcccaatat 387 |||| |||||||||||||||| |||| | ||||| || | |||||| | | |||||||| Sbjct: 17066276 tgttagccatgaagttgtcccgccagcgtatcagcgtggggtagtagtggtacccaatat 17066217 Query: 388 tctc 391 |||| Sbjct: 17066216 tctc 17066213
>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0016H06 Length = 148158 Score = 63.9 bits (32), Expect = 6e-07 Identities = 131/164 (79%) Strand = Plus / Minus Query: 453 ggaaggcaaccaccagggaatatgtactcttttatgaagtctggcctttttctgtattgc 512 ||||||||||| ||||| |||||||| || || |||||||||| || | ||||||| Sbjct: 144341 ggaaggcaacccccaggaaatatgtattccttgatgaagtctgaactcctcctgtattct 144282 Query: 513 tcgtaccgttcctctggaactgagatgaactggaggaccaatatcccatcttcagccaag 572 ||||||||||| || || | ||||||||||||||||| || | ||||| | |||| | Sbjct: 144281 tcgtaccgttcttcagggatggagatgaactggaggacgaacaggccatcctgtgccagg 144222 Query: 573 taagactcacagcaagcaaaaaattcgtccatgtattcatggcc 616 |||||| ||||| | || || |||||||||||||||||||| Sbjct: 144221 agagactcgcagcagccgaagaaatcgtccatgtattcatggcc 144178 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 195 ttgcctggacgagagaaaacaacctggtaatctccaattgctcgtgacttgaaaccagcc 254 ||||| || ||||| || |||| |||||| | ||||| || ||||||||||| ||||| Sbjct: 145998 ttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagct 145939 Query: 255 gcagagaatatgaggtagtactcccatatacggaggaacctttcatcaaagcccaggg 312 || || |||||| |||||||||||||| |||| |||| | ||||| || ||||||| Sbjct: 145938 gcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 145881 Score = 40.1 bits (20), Expect = 8.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 328 tgttggccatgaagttgtccctccagtgcatcagagttgtgtagtaattgggcccaatat 387 |||| |||||||||||||||| |||| | ||||| || | |||||| | | |||||||| Sbjct: 145687 tgttagccatgaagttgtcccgccagcgtatcagcgtggggtagtagtggtacccaatat 145628 Query: 388 tctc 391 |||| Sbjct: 145627 tctc 145624
>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0571D04 Length = 149302 Score = 63.9 bits (32), Expect = 6e-07 Identities = 131/164 (79%) Strand = Plus / Minus Query: 453 ggaaggcaaccaccagggaatatgtactcttttatgaagtctggcctttttctgtattgc 512 ||||||||||| ||||| |||||||| || || |||||||||| || | ||||||| Sbjct: 18056 ggaaggcaacccccaggaaatatgtattccttgatgaagtctgaactcctcctgtattct 17997 Query: 513 tcgtaccgttcctctggaactgagatgaactggaggaccaatatcccatcttcagccaag 572 ||||||||||| || || | ||||||||||||||||| || | ||||| | |||| | Sbjct: 17996 tcgtaccgttcttcagggatggagatgaactggaggacgaacaggccatcctgtgccagg 17937 Query: 573 taagactcacagcaagcaaaaaattcgtccatgtattcatggcc 616 |||||| ||||| | || || |||||||||||||||||||| Sbjct: 17936 agagactcgcagcagccgaagaaatcgtccatgtattcatggcc 17893 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 195 ttgcctggacgagagaaaacaacctggtaatctccaattgctcgtgacttgaaaccagcc 254 ||||| || ||||| || |||| |||||| | ||||| || ||||||||||| ||||| Sbjct: 19713 ttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagct 19654 Query: 255 gcagagaatatgaggtagtactcccatatacggaggaacctttcatcaaagcccaggg 312 || || |||||| |||||||||||||| |||| |||| | ||||| || ||||||| Sbjct: 19653 gcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 19596 Score = 40.1 bits (20), Expect = 8.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 328 tgttggccatgaagttgtccctccagtgcatcagagttgtgtagtaattgggcccaatat 387 |||| |||||||||||||||| |||| | ||||| || | |||||| | | |||||||| Sbjct: 19402 tgttagccatgaagttgtcccgccagcgtatcagcgtggggtagtagtggtacccaatat 19343 Query: 388 tctc 391 |||| Sbjct: 19342 tctc 19339
>ref|XM_478073.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2397 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 195 ttgcctggacgagagaaaacaacctggtaatctccaattgctcgtgacttgaaaccagcc 254 ||||| || ||||| || |||| |||||| | ||||| || ||||||||||| ||||| Sbjct: 2342 ttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagct 2283 Query: 255 gcagagaatatgaggtagtactcccatatacggaggaacctttcatcaaagcccaggg 312 || || |||||| |||||||||||||| |||| |||| | ||||| || ||||||| Sbjct: 2282 gcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 2225 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 597 tcgtccatgtattcatggcc 616 |||||||||||||||||||| Sbjct: 2054 tcgtccatgtattcatggcc 2035
>emb|BX825815.1|CNS0A7J8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL64ZF05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 565 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 462 ccaccagggaatatgtactcttttatgaagtctg 495 ||||||||||||||||| ||||||||||| |||| Sbjct: 63 ccaccagggaatatgtattcttttatgaaatctg 30
>emb|BX822760.1|CNS0A5XU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB62ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1371 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 462 ccaccagggaatatgtactcttttatgaagtctg 495 ||||||||||||||||| ||||||||||| |||| Sbjct: 956 ccaccagggaatatgtattcttttatgaaatctg 923
>dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLM24 Length = 87487 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 462 ccaccagggaatatgtactcttttatgaagtctg 495 ||||||||||||||||| ||||||||||| |||| Sbjct: 86236 ccaccagggaatatgtattcttttatgaaatctg 86203
>ref|NM_113254.2| Arabidopsis thaliana cyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase AT3G23510 mRNA, complete cds Length = 3062 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||| ||| |||||||||||||||| ||||| ||||| |||| Sbjct: 2597 aaagaaggaacgcatgcaccagggaatatgtattctttaatgaaatctg 2549
>dbj|AP000374.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEE5 Length = 20724 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||| ||| |||||||||||||||| ||||| ||||| |||| Sbjct: 17687 aaagaaggaacgcatgcaccagggaatatgtattctttaatgaaatctg 17639 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgta 478 ||||||||||| || ||||||||||||||||| Sbjct: 7229 aaagaaggaagacatccaccagggaatatgta 7198 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgta 478 ||||||||||| || ||||||||||||||||| Sbjct: 2594 aaagaaggaagacatccaccagggaatatgta 2563
>dbj|AK117243.1| Arabidopsis thaliana At3g23510 mRNA for putative cyclopropane-fatty-acyl-phospholipid synthase, complete cds, clone: RAFL16-79-F04 Length = 3062 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgtactcttttatgaagtctg 495 |||||||||| ||| |||||||||||||||| ||||| ||||| |||| Sbjct: 2597 aaagaaggaacgcatgcaccagggaatatgtattctttaatgaaatctg 2549
>ref|NM_113250.2| Arabidopsis thaliana S-adenosylmethionine-dependent methyltransferase/ cyclopropane-fatty-acyl-phospholipid synthase AT3G23470 mRNA, complete cds Length = 1467 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgta 478 ||||||||||| || ||||||||||||||||| Sbjct: 1106 aaagaaggaagacatccaccagggaatatgta 1075
>ref|NM_113251.3| Arabidopsis thaliana S-adenosylmethionine-dependent methyltransferase/ cyclopropane-fatty-acyl-phospholipid synthase AT3G23480 mRNA, complete cds Length = 1640 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgta 478 ||||||||||| || ||||||||||||||||| Sbjct: 1140 aaagaaggaagacatccaccagggaatatgta 1109
>gb|AY072507.1| Arabidopsis thaliana cyclopocyclopropane fatty acid synthase-like protein (At3g23480; MEE5.2) mRNA, complete cds Length = 1143 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgta 478 ||||||||||| || ||||||||||||||||| Sbjct: 1123 aaagaaggaagacatccaccagggaatatgta 1092
>gb|AY054671.1| Arabidopsis thaliana cyclopocyclopropane fatty acid synthase-like protein (At3g23480; MEE5.2) mRNA, complete cds Length = 1789 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgta 478 ||||||||||| || ||||||||||||||||| Sbjct: 1196 aaagaaggaagacatccaccagggaatatgta 1165
>emb|BX824497.1|CNS0A7DL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH52ZB07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1682 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgta 478 ||||||||||| || ||||||||||||||||| Sbjct: 1202 aaagaaggaagacatccaccagggaatatgta 1171
>emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on chromosome 10 Contains the 5' end of the PPP3CB gene for protein phosphatase 3 (formerly 2B) catalytic subunit beta isoform (calcineurin A beta), two novel genes (FLJ37318), the 3' end of a novel gene, a ribosomal protein S26 (RPS26) pseudogene and a CpG island, complete sequence Length = 152161 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 210 aaaacaacctggtaatctccaat 232 ||||||||||||||||||||||| Sbjct: 43260 aaaacaacctggtaatctccaat 43282
>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence Length = 190681 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 210 aaaacaacctggtaatctccaat 232 ||||||||||||||||||||||| Sbjct: 177522 aaaacaacctggtaatctccaat 177500
>gb|AY574038.1| Gossypium hirsutum cyclopropane fatty acid synthase (CPA-FAS-3) mRNA, complete cds Length = 2912 Score = 44.1 bits (22), Expect = 0.55 Identities = 37/42 (88%) Strand = Plus / Minus Query: 579 tcacagcaagcaaaaaattcgtccatgtattcatggccaaca 620 ||||||||| | || || || ||||||||||||||||||||| Sbjct: 2273 tcacagcaaccgaagaagtcctccatgtattcatggccaaca 2232
>emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb0077C18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123766 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 594 aattcgtccatgtattcatggccaacatgttcaatcat 631 ||||| |||||||||||||| ||||| | ||||||||| Sbjct: 123765 aattcatccatgtattcatgaccaacttcttcaatcat 123728
>emb|AL353695.7| Human DNA sequence from clone RP11-17L7 on chromosome 9 Contains the 5' end of the FUBP3 gene for far upstream element (FUSE) binding protein 3 (FBP3) and a CpG island, complete sequence Length = 84661 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 aaaaactaaccattgcatggt 27 ||||||||||||||||||||| Sbjct: 50640 aaaaactaaccattgcatggt 50660
>gb|AC007394.4| Homo sapiens BAC clone RP11-489G12 from 2, complete sequence Length = 171468 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 actaaccattgcatggttaaa 31 ||||||||||||||||||||| Sbjct: 96929 actaaccattgcatggttaaa 96949
>emb|CT571243.9| Mouse DNA sequence from clone RP23-122I21 on chromosome 9, complete sequence Length = 158763 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 gaaggaaggcaaccaccaggg 470 ||||||||||||||||||||| Sbjct: 4786 gaaggaaggcaaccaccaggg 4806
>gb|AC171204.1| Mus musculus BAC clone RP23-312J21 from chromosome 9, complete sequence Length = 223399 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 gaaggaaggcaaccaccaggg 470 ||||||||||||||||||||| Sbjct: 49623 gaaggaaggcaaccaccaggg 49643
>gb|BT020452.1| Arabidopsis thaliana At3g23470 mRNA, complete cds Length = 1386 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgta 478 ||||||||||| || || |||||||||||||| Sbjct: 1070 aaagaaggaagacatccgccagggaatatgta 1039
>gb|BT020267.1| Arabidopsis thaliana At3g23470 mRNA, complete cds Length = 1467 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 447 aaagaaggaaggcaaccaccagggaatatgta 478 ||||||||||| || || |||||||||||||| Sbjct: 1106 aaagaaggaagacatccgccagggaatatgta 1075
>gb|AE017137.1| Yersinia pestis biovar Medievalis str. 91001 section 11 of 16 of the complete genome Length = 291817 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ctaaccattgcatggttaaa 31 |||||||||||||||||||| Sbjct: 63403 ctaaccattgcatggttaaa 63384
>gb|AC137124.17| Mus musculus chromosome 3, clone RP24-229P11, complete sequence Length = 172081 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ccaaagaaggaaggcaacca 464 |||||||||||||||||||| Sbjct: 104089 ccaaagaaggaaggcaacca 104108
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ctaaccattgcatggttaaa 31 |||||||||||||||||||| Sbjct: 1582027 ctaaccattgcatggttaaa 1582046
>emb|AL162738.12| Human DNA sequence from clone RP5-1110L4 on chromosome 1p35.3-36.13 Contains the 5' end of a novel gene, complete sequence Length = 121828 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 ccaaagaaggaaggcaacca 464 |||||||||||||||||||| Sbjct: 104288 ccaaagaaggaaggcaacca 104269
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ctaaccattgcatggttaaa 31 |||||||||||||||||||| Sbjct: 3281270 ctaaccattgcatggttaaa 3281251
>emb|AL592551.10| Mouse DNA sequence from clone RP23-12I13 on chromosome 11, complete sequence Length = 215657 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 tcaaggctggcctagacgac 192 |||||||||||||||||||| Sbjct: 137571 tcaaggctggcctagacgac 137552
>emb|AJ414155.1| Yersinia pestis strain CO92 complete genome; segment 15/20 Length = 205050 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ctaaccattgcatggttaaa 31 |||||||||||||||||||| Sbjct: 37626 ctaaccattgcatggttaaa 37607
>gb|AC132154.3| Homo sapiens BAC clone RP11-523J2 from 2, complete sequence Length = 120590 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 aatatcccatcttcagccaa 571 |||||||||||||||||||| Sbjct: 56410 aatatcccatcttcagccaa 56429
>gb|AC024082.6|AC024082 Human Chromosome 7 clone RP11-20M11, complete sequence Length = 157198 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 aatatcccatcttcagccaa 571 |||||||||||||||||||| Sbjct: 43168 aatatcccatcttcagccaa 43187
>gb|AC129199.3| Mus musculus BAC clone RP24-220I4 from 7, complete sequence Length = 159262 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 actgagatgaactggaggac 550 |||||||||||||||||||| Sbjct: 74533 actgagatgaactggaggac 74514
>gb|AC132130.3| Mus musculus BAC clone RP23-324D11 from 18, complete sequence Length = 183998 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 atgagcgaatcattccagga 92 |||||||||||||||||||| Sbjct: 55266 atgagcgaatcattccagga 55247 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,479,517 Number of Sequences: 3902068 Number of extensions: 5479517 Number of successful extensions: 80731 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80494 Number of HSP's gapped (non-prelim): 232 length of query: 635 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 612 effective length of database: 17,143,297,704 effective search space: 10491698194848 effective search space used: 10491698194848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)