ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC008540.6| Homo sapiens chromosome 19 clone CTC-496P20, comp... 42 0.67
2dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 0.67
3gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 2.6
4gb|AC156563.1| Mus musculus BAC clone RP24-255E14 from 12, compl... 40 2.6
5gb|AC154313.2| Mus musculus BAC clone RP23-354M21 from chromosom... 40 2.6
6emb|AJ404295.1|BSC404295 Borelis schlumbergeri 18S rRNA gene, is... 40 2.6

>gb|AC008540.6| Homo sapiens chromosome 19 clone CTC-496P20, complete sequence
          Length = 224931

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     ctactggtagctacatatttt 83
              |||||||||||||||||||||
Sbjct: 166513 ctactggtagctacatatttt 166493



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 140     cgcgtgggccttctcgacctc 160
               |||||||||||||||||||||
Sbjct: 3196175 cgcgtgggccttctcgacctc 3196155



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     gtgggccttctcgacctcat 162
               ||||||||||||||||||||
Sbjct: 2920753 gtgggccttctcgacctcat 2920772



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>gb|AC156563.1| Mus musculus BAC clone RP24-255E14 from 12, complete sequence
          Length = 175641

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     tgttgcaatgaatgtttctt 118
              ||||||||||||||||||||
Sbjct: 117017 tgttgcaatgaatgtttctt 117036



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>gb|AC154313.2| Mus musculus BAC clone RP23-354M21 from chromosome 12, complete sequence
          Length = 220909

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     acatattttgccactgatca 94
              ||||||||||||||||||||
Sbjct: 134367 acatattttgccactgatca 134386



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>emb|AJ404295.1|BSC404295 Borelis schlumbergeri 18S rRNA gene, isolate 191
          Length = 2744

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 92  tcaatcatgttgcaatgaat 111
           ||||||||||||||||||||
Sbjct: 231 tcaatcatgttgcaatgaat 212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 952,328
Number of Sequences: 3902068
Number of extensions: 952328
Number of successful extensions: 62502
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62467
Number of HSP's gapped (non-prelim): 35
length of query: 208
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 186
effective length of database: 17,147,199,772
effective search space: 3189379157592
effective search space used: 3189379157592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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