>RR30_SPIOL (P19954) Plastid-specific 30S ribosomal protein 1, chloroplast|
           precursor (CS-S5) (CS5) (S22) (Ribosomal protein 1)
           (PSRP-1)
          Length = 302

 Score =  107 bits (267), Expect = 3e-23
 Identities = 51/75 (68%), Positives = 64/75 (85%)
 Frame = -1

Query: 489 IGAEDEETVLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEG 310
           +  ED++ +  +VVRTK F+M PLT+ EA+EQLENVDHDFYAFRNE+TG++NILYKRKEG
Sbjct: 214 VSVEDDDFI-EEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEG 272

Query: 309 GFGLIIPKQDGHVDK 265
           G+GLIIPK DG  +K
Sbjct: 273 GYGLIIPK-DGKTEK 286

>LRTA_SYNY3 (P74518) Light repressed protein A homolog|
          Length = 191

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 31/59 (52%), Positives = 45/59 (76%)
 Frame = -1

Query: 459 TKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPKQ 283
           ++V+R K F M P+ +++ALEQL+ VDHDFY FRN+ T E+N++Y R  GG+G+I P Q
Sbjct: 131 SEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRNKDTDEINVIYIRNHGGYGVIQPHQ 189

>LRTA_SYNP2 (P47908) Light repressed protein A|
          Length = 192

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 31/58 (53%), Positives = 44/58 (75%)
 Frame = -1

Query: 459 TKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPK 286
           ++VVR K F M P+T+D+ALEQL+ VDHDFY F N+ T  +N++Y R  GG+G+I P+
Sbjct: 131 SEVVRMKYFAMPPMTIDQALEQLQLVDHDFYMFLNKDTNAINVIYIRNHGGYGVIQPR 188

>YVYD_BACSU (P28368) Hypothetical protein yvyD|
          Length = 189

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 24/66 (36%), Positives = 43/66 (65%)
 Frame = -1

Query: 480 EDEETVLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFG 301
           E+EE++   +VR K F + P+  +EA+ Q+  + H+F+ F N +T   N++Y+R +G +G
Sbjct: 126 EEEESL--DIVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNAETNLTNVVYRRNDGKYG 183

Query: 300 LIIPKQ 283
           LI P +
Sbjct: 184 LIEPTE 189

>UA82_DEIRA (Q9RVE7) Protein DR1082|
          Length = 191

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 22/54 (40%), Positives = 41/54 (75%)
 Frame = -1

Query: 456 KVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLI 295
           ++VR K FE+ P++ ++A+ Q+E + HDFY F++ Q G+  ++Y+R++G +GLI
Sbjct: 136 EIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-GQTGVVYRRRDGHYGLI 188

>YSEA_STACA (P47995) Hypothetical protein in secA 5'region (ORF1) (Fragment)|
          Length = 165

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 38/54 (70%)
 Frame = -1

Query: 456 KVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLI 295
           +++R+K F + P+  +EA+ Q++ +  DF+ F + +T   +I+Y+RK+G +GLI
Sbjct: 102 EIIRSKQFSLKPMDSEEAVLQMDLLGTDFFIFNDRETDGTSIVYRRKDGKYGLI 155

>RP5M_BRAJA (P30334) Probable sigma(54) modulation protein (ORF203)|
          Length = 203

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = -1

Query: 480 EDEETVLTKVVRTKVF-EMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGF 304
           EDE T  + V+  +    +  L+V EA+ +L+        F++  +G VNI+Y+R +G  
Sbjct: 128 EDEVTGYSPVIIAEATTSLKQLSVSEAVMELDLSGAPCLVFQHGSSGRVNIIYRRADGNV 187

Query: 303 GLIIP---KQDG 277
           G + P   K DG
Sbjct: 188 GWVDPPGGKADG 199

>RP5M_RHIME (P17265) Probable sigma(54) modulation protein|
          Length = 190

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 480 EDEET---VLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEG 310
           EDEE        +V     ++  ++V  A+  L+  D     FR+    ++NI+Y+R +G
Sbjct: 119 EDEEVPDDYAPTIVAETTKQLRTMSVANAVMALDMTDEPVLMFRSPGKDDLNIVYRRNDG 178

Query: 309 GFGLI 295
             G I
Sbjct: 179 NIGWI 183

>VU54_HHV7J (P52516) Protein U54|
          Length = 455

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 93  RRXXWAVLTHDDPTYQLVSCXXWLE 19
           +R  W  L H++PT+ + +C  W++
Sbjct: 142 KRIRWTELQHEEPTHYMYACEFWID 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,758,845
Number of Sequences: 219361
Number of extensions: 1007072
Number of successful extensions: 2655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2653
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)