Clone Information

BLAST Search Result

Clone Name	rbags7c01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_464163.1\| Oryza sativa (japonica cultivar-group), mRNA	206	4e-50
2	gb\|AF216317.1\| Oryza sativa MAP kinase 3 mRNA, complete cds	206	4e-50
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	206	4e-50
4	gb\|AF241166.1\|AF241166 Oryza sativa MAP kinase MAPK2 mRNA, compl...	206	4e-50
5	dbj\|AP005191.3\| Oryza sativa (japonica cultivar-group) genomic D...	206	4e-50
6	dbj\|AK119650.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	206	4e-50
7	gb\|BT016743.1\| Zea mays clone Contig576 mRNA sequence	196	4e-47
8	gb\|AY105935.1\| Zea mays PCO126466 mRNA sequence	196	4e-47
9	gb\|DQ295030.1\| Zea mays putative MAPK mRNA, complete cds	180	2e-42
10	emb\|AJ512642.1\|OSA512642 Oryza sativa (japonica cultivar-group) ...	115	1e-22
11	gb\|AF216316.1\| Oryza sativa MAP kinase 2 mRNA, complete cds	115	1e-22
12	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	115	1e-22
13	dbj\|AP004278.2\| Oryza sativa (japonica cultivar-group) genomic D...	115	1e-22
14	dbj\|AK071376.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	115	1e-22
15	emb\|AJ251330.1\|OSA251330 Oryza sativa mRNA for MAPK4 protein (ma...	107	3e-20
16	gb\|BT018644.1\| Zea mays clone EL01N0505B01.d mRNA sequence	105	1e-19
17	gb\|AY107930.1\| Zea mays PCO133201 mRNA sequence	105	1e-19
18	emb\|AJ634003.1\| Schedonorus arundinaceus mRNA for putative mitog...	80	6e-12
19	ref\|NM_001035940.1\| Arabidopsis thaliana ATMPK1 (MITOGEN-ACTIVAT...	78	3e-11
20	ref\|NM_100895.2\| Arabidopsis thaliana ATMPK1 (MITOGEN-ACTIVATED ...	78	3e-11
21	gb\|BT000062.1\| Arabidopsis thaliana putative mitogen-activated p...	78	3e-11
22	gb\|AY059937.1\| Arabidopsis thaliana putative mitogen-activated p...	78	3e-11
23	gb\|AC005489.1\|AC005489 Genomic sequence for Arabidopsis thaliana...	78	3e-11
24	dbj\|D14713.1\|ATHATMPK1 Arabidopsis thaliana mRNA for ATMPK1, com...	64	4e-07
25	gb\|AF134730.1\|AF134730 Prunus armeniaca putative mitogen-activat...	60	6e-06
26	gb\|AC171267.17\| Medicago truncatula clone mth2-17i7, complete se...	52	0.001
27	emb\|X83440.1\|PHMEK1 P.hybrida mRNA for MAP/ERK kinase 1	52	0.001
28	ref\|NM_119808.1\| Arabidopsis thaliana ATMPK14; MAP kinase/ kinas...	48	0.023
29	emb\|Z99708.1\|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA ...	48	0.023
30	emb\|AL161589.2\|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, ...	48	0.023
31	gb\|DQ056668.1\| Arabidopsis thaliana putative mitogen-activated p...	48	0.023
32	gb\|BT012964.1\| Lycopersicon esculentum clone 114155F, mRNA sequence	46	0.090
33	emb\|CR962133.1\| Medicago truncatula chromosome 5 clone mth2-17h8...	42	1.4
34	gb\|AC141923.27\| Medicago truncatula clone mth2-7f19, complete se...	42	1.4
35	gb\|AC156629.26\| Medicago truncatula clone mth2-143f17, complete ...	42	1.4
36	gb\|AC137553.45\| Medicago truncatula clone mth2-20p12, complete s...	42	1.4
37	gb\|AC135565.18\| Medicago truncatula clone mth2-19b12, complete s...	42	1.4
38	gb\|AY350711.1\| Sisymbrium irio clone BAC Sio11E11, complete sequ...	40	5.6
39	gb\|AC127560.4\| Mus musculus BAC clone RP24-267I18 from chromosom...	40	5.6
40	ref\|XM_764426.1\| Giardia lamblia ATCC 50803 hypothetical protein...	40	5.6
41	gb\|CP000239.1\| Synechococcus sp. JA-3-3Ab, complete genome	40	5.6
42	dbj\|AK046775.1\| Mus musculus 10 days neonate medulla oblongata c...	40	5.6
43	dbj\|AB012239.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	5.6
44	gb\|AC123661.22\| Mus musculus chromosome 5, clone RP23-211E12, co...	40	5.6

>ref|XM_464163.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1549

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Minus

                                                                        
Query: 242  cttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactga 301
            ||||||| |||||||| |||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 1267 cttcagggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactga 1208

                                                                        
Query: 302  tgttctcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcat 361
            ||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 1207 tgttctcgtctatgtccagatcgataggcacttgcgcgggaggatttgcacttggatcat 1148

                                        
Query: 362  acagaggagacatgtaagggtgctcaag 389
            ||||||| ||||||||||||||||||||
Sbjct: 1147 acagaggggacatgtaagggtgctcaag 1120



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                           
Query: 116  tgcacgtcgtggttacttaataggtgcgataatcgccgtagtctttt 162
            |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 1390 tgcacgtcttggttacttaataggtgcgataatcgccgtaggctttt 1344



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 29   catacaccaaatagtggtccataacaagaactat 62
            |||||||||| || |||||||||||| |||||||
Sbjct: 1474 catacaccaagtaatggtccataacatgaactat 1441

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>gb|AF216317.1| Oryza sativa MAP kinase 3 mRNA, complete cds
          Length = 1545

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Minus

                                                                        
Query: 242  cttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactga 301
            ||||||| |||||||| |||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 1254 cttcagggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactga 1195

                                                                        
Query: 302  tgttctcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcat 361
            ||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 1194 tgttctcgtctatgtccagatcgataggcacttgcgcgggaggatttgcacttggatcat 1135

                                        
Query: 362  acagaggagacatgtaagggtgctcaag 389
            ||||||| ||||||||||||||||||||
Sbjct: 1134 acagaggggacatgtaagggtgctcaag 1107



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                           
Query: 116  tgcacgtcgtggttacttaataggtgcgataatcgccgtagtctttt 162
            |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 1377 tgcacgtcttggttacttaataggtgcgataatcgccgtaggctttt 1331



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 29   catacaccaaatagtggtccataacaagaactat 62
            |||||||||| || |||||||||||| |||||||
Sbjct: 1461 catacaccaagtaatggtccataacatgaactat 1428

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Plus

                                                                           
Query: 242     cttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactga 301
               ||||||| |||||||| |||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 2643336 cttcagggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactga 2643395

                                                                           
Query: 302     tgttctcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcat 361
               ||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 2643396 tgttctcgtctatgtccagatcgataggcacttgcgcgggaggatttgcacttggatcat 2643455

                                           
Query: 362     acagaggagacatgtaagggtgctcaag 389
               ||||||| ||||||||||||||||||||
Sbjct: 2643456 acagaggggacatgtaagggtgctcaag 2643483



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                              
Query: 116     tgcacgtcgtggttacttaataggtgcgataatcgccgtagtctttt 162
               |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 2643213 tgcacgtcttggttacttaataggtgcgataatcgccgtaggctttt 2643259



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 29      catacaccaaatagtggtccataacaagaactat 62
               |||||||||| || |||||||||||| |||||||
Sbjct: 2643129 catacaccaagtaatggtccataacatgaactat 2643162

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>gb|AF241166.1|AF241166 Oryza sativa MAP kinase MAPK2 mRNA, complete cds
          Length = 1544

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Minus

                                                                        
Query: 242  cttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactga 301
            ||||||| |||||||| |||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 1244 cttcagggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactga 1185

                                                                        
Query: 302  tgttctcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcat 361
            ||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 1184 tgttctcgtctatgtccagatcgataggcacttgcgcgggaggatttgcacttggatcat 1125

                                        
Query: 362  acagaggagacatgtaagggtgctcaag 389
            ||||||| ||||||||||||||||||||
Sbjct: 1124 acagaggggacatgtaagggtgctcaag 1097



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                           
Query: 116  tgcacgtcgtggttacttaataggtgcgataatcgccgtagtctttt 162
            |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 1367 tgcacgtcttggttacttaataggtgcgataatcgccgtaggctttt 1321



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 29   catacaccaaatagtggtccataacaagaactat 62
            |||||||||| || |||||||||||| |||||||
Sbjct: 1451 catacaccaagtaatggtccataacatgaactat 1418

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>dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0479D12
          Length = 148362

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Plus

                                                                         
Query: 242   cttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactga 301
             ||||||| |||||||| |||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 45558 cttcagggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactga 45617

                                                                         
Query: 302   tgttctcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcat 361
             ||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 45618 tgttctcgtctatgtccagatcgataggcacttgcgcgggaggatttgcacttggatcat 45677

                                         
Query: 362   acagaggagacatgtaagggtgctcaag 389
             ||||||| ||||||||||||||||||||
Sbjct: 45678 acagaggggacatgtaagggtgctcaag 45705



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                            
Query: 116   tgcacgtcgtggttacttaataggtgcgataatcgccgtagtctttt 162
             |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 45435 tgcacgtcttggttacttaataggtgcgataatcgccgtaggctttt 45481



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 29    catacaccaaatagtggtccataacaagaactat 62
             |||||||||| || |||||||||||| |||||||
Sbjct: 45351 catacaccaagtaatggtccataacatgaactat 45384

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>dbj|AK119650.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-G10, full
            insert sequence
          Length = 1549

 Score =  206 bits (104), Expect = 4e-50
 Identities = 137/148 (92%)
 Strand = Plus / Minus

                                                                        
Query: 242  cttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactga 301
            ||||||| |||||||| |||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 1267 cttcagggtggtagtggagcatctcgtgccacatcatttccctgatcatatctgcactga 1208

                                                                        
Query: 302  tgttctcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcat 361
            ||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 1207 tgttctcgtctatgtccagatcgataggcacttgcgcgggaggatttgcacttggatcat 1148

                                        
Query: 362  acagaggagacatgtaagggtgctcaag 389
            ||||||| ||||||||||||||||||||
Sbjct: 1147 acagaggggacatgtaagggtgctcaag 1120



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                           
Query: 116  tgcacgtcgtggttacttaataggtgcgataatcgccgtagtctttt 162
            |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 1390 tgcacgtcttggttacttaataggtgcgataatcgccgtaggctttt 1344



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 29   catacaccaaatagtggtccataacaagaactat 62
            |||||||||| || |||||||||||| |||||||
Sbjct: 1474 catacaccaagtaatggtccataacatgaactat 1441

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>gb|BT016743.1| Zea mays clone Contig576 mRNA sequence
          Length = 1656

 Score =  196 bits (99), Expect = 4e-47
 Identities = 172/195 (88%), Gaps = 1/195 (0%)
 Strand = Plus / Minus

                                                                        
Query: 221  acatgtttactgctgcggcggcttcaggatggtagtgaagcatctcctgccacatcattt 280
            ||||| ||| ||||| |||  ||||||| |||||||||||||||||||||||||||||||
Sbjct: 1257 acatgcttattgctgtggcaacttcagggtggtagtgaagcatctcctgccacatcattt 1198

                                                                        
Query: 281  ccctgatcatctctgaactgatgttctcatctatgtcgagatcgatgggcacttgcgcgg 340
            ||| |||||||||||| |||||||| || |||||||| ||||||||||||||||| || |
Sbjct: 1197 cccggatcatctctgagctgatgttttcgtctatgtccagatcgatgggcacttgggctg 1138

                                                                        
Query: 341  gagggtttgcacttgggtcatacagaggagacatgtaagggtgctcaagggccctgggta 400
            | || ||||| ||||||||||||||||| ||||||||||||||||| || | ||| ||| 
Sbjct: 1137 ggggatttgcgcttgggtcatacagaggggacatgtaagggtgctcgagag-cctcggtg 1079

                           
Query: 401  acacttatccttttg 415
            ||||| |||||||||
Sbjct: 1078 acactgatccttttg 1064

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>gb|AY105935.1| Zea mays PCO126466 mRNA sequence
          Length = 1697

 Score =  196 bits (99), Expect = 4e-47
 Identities = 172/195 (88%), Gaps = 1/195 (0%)
 Strand = Plus / Minus

                                                                        
Query: 221  acatgtttactgctgcggcggcttcaggatggtagtgaagcatctcctgccacatcattt 280
            ||||| ||| ||||| |||  ||||||| |||||||||||||||||||||||||||||||
Sbjct: 1351 acatgcttattgctgtggcaacttcagggtggtagtgaagcatctcctgccacatcattt 1292

                                                                        
Query: 281  ccctgatcatctctgaactgatgttctcatctatgtcgagatcgatgggcacttgcgcgg 340
            ||| |||||||||||| |||||||| || |||||||| ||||||||||||||||| || |
Sbjct: 1291 cccggatcatctctgagctgatgttttcgtctatgtccagatcgatgggcacttgggctg 1232

                                                                        
Query: 341  gagggtttgcacttgggtcatacagaggagacatgtaagggtgctcaagggccctgggta 400
            | || ||||| ||||||||||||||||| ||||||||||||||||| || | ||| ||| 
Sbjct: 1231 ggggatttgcgcttgggtcatacagaggggacatgtaagggtgctcgagag-cctcggtg 1173

                           
Query: 401  acacttatccttttg 415
            ||||| |||||||||
Sbjct: 1172 acactgatccttttg 1158

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>gb|DQ295030.1| Zea mays putative MAPK mRNA, complete cds
          Length = 1113

 Score =  180 bits (91), Expect = 2e-42
 Identities = 170/195 (87%), Gaps = 1/195 (0%)
 Strand = Plus / Minus

                                                                        
Query: 221  acatgtttactgctgcggcggcttcaggatggtagtgaagcatctcctgccacatcattt 280
            ||||| ||| ||||| |||  ||||||| |||||||||||||||||||||||||||||||
Sbjct: 1108 acatgcttattgctgtggcaacttcagggtggtagtgaagcatctcctgccacatcattt 1049

                                                                        
Query: 281  ccctgatcatctctgaactgatgttctcatctatgtcgagatcgatgggcacttgcgcgg 340
            ||| ||||||||||||  ||||||| || |||||||| ||||||||||||||||| || |
Sbjct: 1048 cccggatcatctctgagttgatgttttcgtctatgtccagatcgatgggcacttgggctg 989

                                                                        
Query: 341  gagggtttgcacttgggtcatacagaggagacatgtaagggtgctcaagggccctgggta 400
            | || ||||| ||||| ||||||||||| ||||||||||||||||| || | ||| ||| 
Sbjct: 988  ggggatttgcgcttggatcatacagaggggacatgtaagggtgctcgagag-cctcggtg 930

                           
Query: 401  acacttatccttttg 415
            ||||| |||||||||
Sbjct: 929  acactgatccttttg 915

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>emb|AJ512642.1|OSA512642 Oryza sativa (japonica cultivar-group) mRNA for putative
            mitogen-activated protein kinase msrmk3 (msrmk3 gene)
          Length = 1371

 Score =  115 bits (58), Expect = 1e-22
 Identities = 115/134 (85%)
 Strand = Plus / Minus

                                                                        
Query: 253  tagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttctcatct 312
            ||||| |||||||||||||||||||| |||| |||||| ||    |  |  || ||||| 
Sbjct: 1096 tagtggagcatctcctgccacatcatctcccggatcatatccacgccaagattttcatcg 1037

                                                                        
Query: 313  atgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacagaggagac 372
            ||||||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct: 1036 atgtcgagatcgatgggcacttgagcaggagggtttgcgcttggatcatacagtggagac 977

                          
Query: 373  atgtaagggtgctc 386
            ||||||||||||||
Sbjct: 976  atgtaagggtgctc 963

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>gb|AF216316.1| Oryza sativa MAP kinase 2 mRNA, complete cds
          Length = 1697

 Score =  115 bits (58), Expect = 1e-22
 Identities = 115/134 (85%)
 Strand = Plus / Minus

                                                                        
Query: 253  tagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttctcatct 312
            ||||| |||||||||||||||||||| |||| |||||| ||    |  |  || ||||| 
Sbjct: 1165 tagtggagcatctcctgccacatcatctcccggatcatatccacgccaagattttcatcg 1106

                                                                        
Query: 313  atgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacagaggagac 372
            ||||||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct: 1105 atgtcgagatcgatgggcacttgagcaggagggtttgcgcttggatcatacagtggagac 1046

                          
Query: 373  atgtaagggtgctc 386
            ||||||||||||||
Sbjct: 1045 atgtaagggtgctc 1032

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  115 bits (58), Expect = 1e-22
 Identities = 115/134 (85%)
 Strand = Plus / Minus

                                                                            
Query: 253      tagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttctcatct 312
                ||||| |||||||||||||||||||| |||| |||||| ||    |  |  || ||||| 
Sbjct: 28886208 tagtggagcatctcctgccacatcatctcccggatcatatccacgccaagattttcatcg 28886149

                                                                            
Query: 313      atgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacagaggagac 372
                ||||||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct: 28886148 atgtcgagatcgatgggcacttgagcaggagggtttgcgcttggatcatacagtggagac 28886089

                              
Query: 373      atgtaagggtgctc 386
                ||||||||||||||
Sbjct: 28886088 atgtaagggtgctc 28886075

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>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0468G03
          Length = 143918

 Score =  115 bits (58), Expect = 1e-22
 Identities = 115/134 (85%)
 Strand = Plus / Minus

                                                                         
Query: 253   tagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttctcatct 312
             ||||| |||||||||||||||||||| |||| |||||| ||    |  |  || ||||| 
Sbjct: 36252 tagtggagcatctcctgccacatcatctcccggatcatatccacgccaagattttcatcg 36193

                                                                         
Query: 313   atgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacagaggagac 372
             ||||||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct: 36192 atgtcgagatcgatgggcacttgagcaggagggtttgcgcttggatcatacagtggagac 36133

                           
Query: 373   atgtaagggtgctc 386
             ||||||||||||||
Sbjct: 36132 atgtaagggtgctc 36119

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>dbj|AK071376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093O04, full
            insert sequence
          Length = 1692

 Score =  115 bits (58), Expect = 1e-22
 Identities = 115/134 (85%)
 Strand = Plus / Minus

                                                                        
Query: 253  tagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttctcatct 312
            ||||| |||||||||||||||||||| |||| |||||| ||    |  |  || ||||| 
Sbjct: 1266 tagtggagcatctcctgccacatcatctcccggatcatatccacgccaagattttcatcg 1207

                                                                        
Query: 313  atgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacagaggagac 372
            ||||||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct: 1206 atgtcgagatcgatgggcacttgagcaggagggtttgcgcttggatcatacagtggagac 1147

                          
Query: 373  atgtaagggtgctc 386
            ||||||||||||||
Sbjct: 1146 atgtaagggtgctc 1133

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>emb|AJ251330.1|OSA251330 Oryza sativa mRNA for MAPK4 protein (mapk4 gene)
          Length = 1653

 Score =  107 bits (54), Expect = 3e-20
 Identities = 114/134 (85%)
 Strand = Plus / Minus

                                                                        
Query: 253  tagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttctcatct 312
            ||||| |||||||||||||||||||| |||| |||||| ||    |  |  || ||||| 
Sbjct: 1300 tagtggagcatctcctgccacatcatctcccggatcatatccacgccaagattttcatcg 1241

                                                                        
Query: 313  atgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacagaggagac 372
            |||||||||||||||||||||||  | ||||||||||| ||||| |||||||| ||||||
Sbjct: 1240 atgtcgagatcgatgggcacttgaacaggagggtttgcgcttggatcatacagtggagac 1181

                          
Query: 373  atgtaagggtgctc 386
            ||||||||||||||
Sbjct: 1180 atgtaagggtgctc 1167

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>gb|BT018644.1| Zea mays clone EL01N0505B01.d mRNA sequence
          Length = 1630

 Score =  105 bits (53), Expect = 1e-19
 Identities = 116/137 (84%)
 Strand = Plus / Minus

                                                                        
Query: 250  tggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttctca 309
            |||||||| | |||||||||||||||||| ||||||||||| ||    | || |||||| 
Sbjct: 1301 tggtagtggatcatctcctgccacatcatctccctgatcatgtcgacgccgaggttctcg 1242

                                                                        
Query: 310  tctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacagagga 369
            || |||||||| ||||| ||||| |||||||||||||| || || |||||||| || |||
Sbjct: 1241 tcgatgtcgaggtcgatcggcacctgcgcgggagggttcgcgctcgggtcatagagcgga 1182

                             
Query: 370  gacatgtaagggtgctc 386
            |||||||| ||||||||
Sbjct: 1181 gacatgtacgggtgctc 1165

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>gb|AY107930.1| Zea mays PCO133201 mRNA sequence
          Length = 617

 Score =  105 bits (53), Expect = 1e-19
 Identities = 116/137 (84%)
 Strand = Plus / Minus

                                                                       
Query: 250 tggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttctca 309
           |||||||| | |||||||||||||||||| ||||||||||| ||    | || |||||| 
Sbjct: 223 tggtagtggatcatctcctgccacatcatctccctgatcatgtcgacgccgaggttctcg 164

                                                                       
Query: 310 tctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacagagga 369
           || |||||||| ||||| ||||| |||||||||||||| || || |||||||| || |||
Sbjct: 163 tcgatgtcgaggtcgatcggcacctgcgcgggagggttcgcgctcgggtcatagagcgga 104

                            
Query: 370 gacatgtaagggtgctc 386
           |||||||| ||||||||
Sbjct: 103 gacatgtacgggtgctc 87

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>emb|AJ634003.1| Schedonorus arundinaceus mRNA for putative mitogen-activated protein
            kinase (mapk gene)
          Length = 1470

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 121/148 (81%)
 Strand = Plus / Minus

                                                                        
Query: 237  ggcggcttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatctctga 296
            |||||| ||||| ||||| || |||||||||||||||| |||||| | |||| |||||  
Sbjct: 1096 ggcggcctcagggtggtactggagcatctcctgccacaacatttctcggatcgtctctac 1037

                                                                        
Query: 297  actgatgttctcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgg 356
            || |||||| |||||||| || ||||| ||||| || || || |||||||||||   |||
Sbjct: 1036 accgatgttttcatctatatcaagatcaatgggtacctgggcaggagggtttgcggctgg 977

                                        
Query: 357  gtcatacagaggagacatgtaagggtgc 384
             ||||||||   ||||||||| ||||||
Sbjct: 976  atcatacagctcagacatgtaggggtgc 949

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>ref|NM_001035940.1| Arabidopsis thaliana ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1); MAP
            kinase/ kinase AT1G10210 (ATMPK1) transcript variant
            AT1G10210.2 mRNA, complete cds
          Length = 1861

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Minus

                                                                        
Query: 247  ggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttc 306
            |||||||||||||||||||| | |||||||||||| || ||||||||    || |  | |
Sbjct: 1426 ggatggtagtgaagcatctcattccacatcatttctcttatcatctcctctctcaaatcc 1367

                                                                        
Query: 307  tcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacaga 366
            |||||||  ||||||||||| || ||||| || |||||||||||| | |||||||| |||
Sbjct: 1366 tcatctacatcgagatcgataggaacttgagcaggagggtttgcattcgggtcatataga 1307

                       
Query: 367  ggagacatgta 377
            || | ||||||
Sbjct: 1306 ggcgccatgta 1296

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>ref|NM_100895.2| Arabidopsis thaliana ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1); MAP
            kinase/ kinase AT1G10210 (ATMPK1) transcript variant
            AT1G10210.1 mRNA, complete cds
          Length = 1631

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Minus

                                                                        
Query: 247  ggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttc 306
            |||||||||||||||||||| | |||||||||||| || ||||||||    || |  | |
Sbjct: 1196 ggatggtagtgaagcatctcattccacatcatttctcttatcatctcctctctcaaatcc 1137

                                                                        
Query: 307  tcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacaga 366
            |||||||  ||||||||||| || ||||| || |||||||||||| | |||||||| |||
Sbjct: 1136 tcatctacatcgagatcgataggaacttgagcaggagggtttgcattcgggtcatataga 1077

                       
Query: 367  ggagacatgta 377
            || | ||||||
Sbjct: 1076 ggcgccatgta 1066

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>gb|BT000062.1| Arabidopsis thaliana putative mitogen-activated protein kinase
            homolog 7 (At1g10210) mRNA, complete cds
          Length = 1470

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Minus

                                                                        
Query: 247  ggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttc 306
            |||||||||||||||||||| | |||||||||||| || ||||||||    || |  | |
Sbjct: 1082 ggatggtagtgaagcatctcattccacatcatttctcttatcatctcctctctcaaatcc 1023

                                                                        
Query: 307  tcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacaga 366
            |||||||  ||||||||||| || ||||| || |||||||||||| | |||||||| |||
Sbjct: 1022 tcatctacatcgagatcgataggaacttgagcaggagggtttgcattcgggtcatataga 963

                       
Query: 367  ggagacatgta 377
            || | ||||||
Sbjct: 962  ggcgccatgta 952

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>gb|AY059937.1| Arabidopsis thaliana putative mitogen-activated protein kinase
            homolog 7 (At1g10210; F14N23.9) mRNA, complete cds
          Length = 1596

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Minus

                                                                        
Query: 247  ggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttc 306
            |||||||||||||||||||| | |||||||||||| || ||||||||    || |  | |
Sbjct: 1162 ggatggtagtgaagcatctcattccacatcatttctcttatcatctcctctctcaaatcc 1103

                                                                        
Query: 307  tcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacaga 366
            |||||||  ||||||||||| || ||||| || |||||||||||| | |||||||| |||
Sbjct: 1102 tcatctacatcgagatcgataggaacttgagcaggagggtttgcattcgggtcatataga 1043

                       
Query: 367  ggagacatgta 377
            || | ||||||
Sbjct: 1042 ggcgccatgta 1032

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>gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1,
             complete sequence
          Length = 100746

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Minus

                                                                         
Query: 247   ggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttc 306
             |||||||||||||||||||| | |||||||||||| || ||||||||    || |  | |
Sbjct: 31105 ggatggtagtgaagcatctcattccacatcatttctcttatcatctcctctctcaaatcc 31046

                                                                         
Query: 307   tcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcatacaga 366
             |||||||  ||||||||||| || ||||| || |||||||||||| | |||||||| |||
Sbjct: 31045 tcatctacatcgagatcgataggaacttgagcaggagggtttgcattcgggtcatataga 30986

                        
Query: 367   ggagacatgta 377
             || | ||||||
Sbjct: 30985 ggcgccatgta 30975

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>dbj|D14713.1|ATHATMPK1 Arabidopsis thaliana mRNA for ATMPK1, complete cds
          Length = 1520

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 95/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 247  ggatggtagtgaagcatctcctgccacatcatttccctgatcatctctgaactgatgttc 306
            |||||||||||||||||||| | ||| |||||||| || ||||||||    || |  | |
Sbjct: 1189 ggatggtagtgaagcatctcattccatatcatttctcttatcatctcctctctcaaatcc 1130

                                                                    
Query: 307  tcatctatgtcgagatcgatgggcacttgcgcgggagggtttgcacttgggtcata 362
            |||||||  ||||||||||| || ||||| || |||||||||||| | ||||||||
Sbjct: 1129 tcatctacatcgagatcgataggaacttgagcaggagggtttgcattcgggtcata 1074

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>gb|AF134730.1|AF134730 Prunus armeniaca putative mitogen-activated protein kinase MAPK mRNA,
            complete cds
          Length = 1470

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 241  gcttcaggatggtagtgaagcatctcctgccacatcatttccctgatcat 290
            ||||| || ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 1139 gcttctgggtggtagtgaagcatctcatgccacatcatctccctaatcat 1090

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>gb|AC171267.17| Medicago truncatula clone mth2-17i7, complete sequence
          Length = 108819

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 241   gcttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatctct 294
             |||||||||||||| || |||||||| | | |||||||||| || |||||||||
Sbjct: 83403 gcttcaggatggtaatgcagcatctcattcaacatcatttctcttatcatctct 83350



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 242   cttcaggatggtagtgaagcatctcctgccacatcatttccctgatcat 290
             ||||||||||||  || |||||||| | |||||||||||| || |||||
Sbjct: 78234 cttcaggatggtgatgtagcatctcattccacatcatttctctaatcat 78186

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>emb|X83440.1|PHMEK1 P.hybrida mRNA for MAP/ERK kinase 1
          Length = 1611

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 241  gcttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatctct 294
            ||||| |||||||| ||||| || |||| ||||||||||||||| ||| |||||
Sbjct: 1343 gcttctggatggtaatgaagtatttcctcccacatcatttcccttatcgtctct 1290

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>ref|NM_119808.1| Arabidopsis thaliana ATMPK14; MAP kinase/ kinase AT4G36450 (ATMPK14)
            mRNA, complete cds
          Length = 1086

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 251  ggtagtgaagcatctcctgccacatcatttccctgatcat 290
            |||| ||||||||||| | ||||||||| |||||||||||
Sbjct: 1072 ggtaatgaagcatctcttcccacatcatctccctgatcat 1033

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>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2
          Length = 198354

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 251    ggtagtgaagcatctcctgccacatcatttccctgatcat 290
              |||| ||||||||||| | ||||||||| |||||||||||
Sbjct: 159160 ggtaatgaagcatctcttcccacatcatctccctgatcat 159121

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>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85
          Length = 198750

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 251   ggtagtgaagcatctcctgccacatcatttccctgatcat 290
             |||| ||||||||||| | ||||||||| |||||||||||
Sbjct: 91568 ggtaatgaagcatctcttcccacatcatctccctgatcat 91607

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>gb|DQ056668.1| Arabidopsis thaliana putative mitogen-activated protein kinase
            (At4g36450) mRNA, complete cds
          Length = 1086

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 251  ggtagtgaagcatctcctgccacatcatttccctgatcat 290
            |||| ||||||||||| | ||||||||| |||||||||||
Sbjct: 1072 ggtaatgaagcatctcttcccacatcatctccctgatcat 1033

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>gb|BT012964.1| Lycopersicon esculentum clone 114155F, mRNA sequence
          Length = 1688

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 232  gctgcggcggcttcaggatggtagtgaagcatctcctgccacatcatttccctgatcatc 291
            |||| ||| |||||||||||||| ||||| || |||  ||||||||| ||||| ||| ||
Sbjct: 1469 gctgtggcagcttcaggatggtaatgaagtatttccgtccacatcatgtcccttatcgtc 1410

               
Query: 292  tct 294
            |||
Sbjct: 1409 tct 1407

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>emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8, COMPLETE SEQUENCE
          Length = 114811

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    acaacaacacaacagtataca 30
             |||||||||||||||||||||
Sbjct: 19944 acaacaacacaacagtataca 19924

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>gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete sequence
          Length = 116685

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   acaacaacacaacagtataca 30
            |||||||||||||||||||||
Sbjct: 1146 acaacaacacaacagtataca 1166

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>gb|AC156629.26| Medicago truncatula clone mth2-143f17, complete sequence
          Length = 130456

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    acaacaacacaacagtataca 30
             |||||||||||||||||||||
Sbjct: 25501 acaacaacacaacagtataca 25481

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>gb|AC137553.45| Medicago truncatula clone mth2-20p12, complete sequence
          Length = 134249

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    acaacaacacaacagtataca 30
             |||||||||||||||||||||
Sbjct: 15667 acaacaacacaacagtataca 15687

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>gb|AC135565.18| Medicago truncatula clone mth2-19b12, complete sequence
          Length = 121647

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    acaacaacacaacagtataca 30
             |||||||||||||||||||||
Sbjct: 56007 acaacaacacaacagtataca 55987

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>gb|AY350711.1| Sisymbrium irio clone BAC Sio11E11, complete sequence
          Length = 95357

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 270 ccacatcatttccctgatca 289
           ||||||||||||||||||||
Sbjct: 97  ccacatcatttccctgatca 116

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>gb|AC127560.4| Mus musculus BAC clone RP24-267I18 from chromosome 5, complete sequence
          Length = 186768

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   gccacatcatttccctgatc 288
             ||||||||||||||||||||
Sbjct: 14009 gccacatcatttccctgatc 13990

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>ref|XM_764426.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_336_40147_37625) partial mRNA
          Length = 2523

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 230 ctgctgcggcggcttcaggatggt 253
           ||||||||||| ||||||||||||
Sbjct: 127 ctgctgcggcgtcttcaggatggt 104

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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     ctgctgcggcggcttcagga 249
               ||||||||||||||||||||
Sbjct: 2748272 ctgctgcggcggcttcagga 2748253

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>dbj|AK046775.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
           full-length enriched library, clone:B830003C01
           product:hypothetical Lysine-rich region containing
           protein, full insert sequence
          Length = 3070

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 gccacatcatttccctgatc 288
           ||||||||||||||||||||
Sbjct: 708 gccacatcatttccctgatc 689

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>dbj|AB012239.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9
          Length = 69142

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   ccacatcatttccctgatca 289
             ||||||||||||||||||||
Sbjct: 50483 ccacatcatttccctgatca 50464

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>gb|AC123661.22| Mus musculus chromosome 5, clone RP23-211E12, complete sequence
          Length = 190017

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   gccacatcatttccctgatc 288
             ||||||||||||||||||||
Sbjct: 67854 gccacatcatttccctgatc 67835


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,840,867
Number of Sequences: 3902068
Number of extensions: 2840867
Number of successful extensions: 52322
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52199
Number of HSP's gapped (non-prelim): 123
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result