ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags6n01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 111 bits (56), Expect = 6e-22 Identities = 108/126 (85%) Strand = Plus / Minus Query: 19 gctcaggctggaacttcatcggaagaagggtatgtctgaagaacgtaanccgggtcgccg 78 ||||| |||||| ||||||||||||||||| || ||| |||||| ||| |||| |||| | Sbjct: 21979436 gctcatgctggagcttcatcggaagaagggaatctctcaagaacataaaccggatcgctg 21979377 Query: 79 accttgacgatcctccctttgccctttgctgatnccgattccttgcagaccagattttgc 138 ||||||| |||||| |||||||||||||| || |||||||||||||| | ||||||| Sbjct: 21979376 accttgatgatccttcctttgccctttgcagacagagattccttgcagactaaattttgc 21979317 Query: 139 ccaaag 144 |||||| Sbjct: 21979316 ccaaag 21979311 Score = 77.8 bits (39), Expect = 8e-12 Identities = 103/125 (82%) Strand = Plus / Minus Query: 19 gctcaggctggaacttcatcggaagaagggtatgtctgaagaacgtaanccgggtcgccg 78 ||||| |||||||||||||| ||||||||| ||| || |||||| ||| | || |||||| Sbjct: 21982571 gctcatgctggaacttcatctgaagaagggaatgactcaagaacataaactggatcgccg 21982512 Query: 79 accttgacgatcctccctttgccctttgctgatnccgattccttgcagaccagattttgc 138 ||||||| |||||| |||| | ||||| || |||||||||||||| | ||||||| Sbjct: 21982511 accttgatgatccttccttcatcttttgccgacagagattccttgcagactaaattttgc 21982452 Query: 139 ccaaa 143 ||||| Sbjct: 21982451 ccaaa 21982447
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 111 bits (56), Expect = 6e-22 Identities = 108/126 (85%) Strand = Plus / Minus Query: 19 gctcaggctggaacttcatcggaagaagggtatgtctgaagaacgtaanccgggtcgccg 78 ||||| |||||| ||||||||||||||||| || ||| |||||| ||| |||| |||| | Sbjct: 21500 gctcatgctggagcttcatcggaagaagggaatctctcaagaacataaaccggatcgctg 21441 Query: 79 accttgacgatcctccctttgccctttgctgatnccgattccttgcagaccagattttgc 138 ||||||| |||||| |||||||||||||| || |||||||||||||| | ||||||| Sbjct: 21440 accttgatgatccttcctttgccctttgcagacagagattccttgcagactaaattttgc 21381 Query: 139 ccaaag 144 |||||| Sbjct: 21380 ccaaag 21375 Score = 77.8 bits (39), Expect = 8e-12 Identities = 103/125 (82%) Strand = Plus / Minus Query: 19 gctcaggctggaacttcatcggaagaagggtatgtctgaagaacgtaanccgggtcgccg 78 ||||| |||||||||||||| ||||||||| ||| || |||||| ||| | || |||||| Sbjct: 24635 gctcatgctggaacttcatctgaagaagggaatgactcaagaacataaactggatcgccg 24576 Query: 79 accttgacgatcctccctttgccctttgctgatnccgattccttgcagaccagattttgc 138 ||||||| |||||| |||| | ||||| || |||||||||||||| | ||||||| Sbjct: 24575 accttgatgatccttccttcatcttttgccgacagagattccttgcagactaaattttgc 24516 Query: 139 ccaaa 143 ||||| Sbjct: 24515 ccaaa 24511
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 111 bits (56), Expect = 6e-22 Identities = 108/126 (85%) Strand = Plus / Minus Query: 19 gctcaggctggaacttcatcggaagaagggtatgtctgaagaacgtaanccgggtcgccg 78 ||||| |||||| ||||||||||||||||| || ||| |||||| ||| |||| |||| | Sbjct: 110153 gctcatgctggagcttcatcggaagaagggaatctctcaagaacataaaccggatcgctg 110094 Query: 79 accttgacgatcctccctttgccctttgctgatnccgattccttgcagaccagattttgc 138 ||||||| |||||| |||||||||||||| || |||||||||||||| | ||||||| Sbjct: 110093 accttgatgatccttcctttgccctttgcagacagagattccttgcagactaaattttgc 110034 Query: 139 ccaaag 144 |||||| Sbjct: 110033 ccaaag 110028 Score = 77.8 bits (39), Expect = 8e-12 Identities = 103/125 (82%) Strand = Plus / Minus Query: 19 gctcaggctggaacttcatcggaagaagggtatgtctgaagaacgtaanccgggtcgccg 78 ||||| |||||||||||||| ||||||||| ||| || |||||| ||| | || |||||| Sbjct: 113288 gctcatgctggaacttcatctgaagaagggaatgactcaagaacataaactggatcgccg 113229 Query: 79 accttgacgatcctccctttgccctttgctgatnccgattccttgcagaccagattttgc 138 ||||||| |||||| |||| | ||||| || |||||||||||||| | ||||||| Sbjct: 113228 accttgatgatccttccttcatcttttgccgacagagattccttgcagactaaattttgc 113169 Query: 139 ccaaa 143 ||||| Sbjct: 113168 ccaaa 113164
>dbj|AK105941.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B12, full insert sequence Length = 1214 Score = 111 bits (56), Expect = 6e-22 Identities = 108/126 (85%) Strand = Plus / Minus Query: 19 gctcaggctggaacttcatcggaagaagggtatgtctgaagaacgtaanccgggtcgccg 78 ||||| |||||| ||||||||||||||||| || ||| |||||| ||| |||| |||| | Sbjct: 1002 gctcatgctggagcttcatcggaagaagggaatctctcaagaacataaaccggatcgctg 943 Query: 79 accttgacgatcctccctttgccctttgctgatnccgattccttgcagaccagattttgc 138 ||||||| |||||| |||||||||||||| || |||||||||||||| | ||||||| Sbjct: 942 accttgatgatccttcctttgccctttgcagacagagattccttgcagactaaattttgc 883 Query: 139 ccaaag 144 |||||| Sbjct: 882 ccaaag 877
>dbj|AK069278.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012E10, full insert sequence Length = 1271 Score = 111 bits (56), Expect = 6e-22 Identities = 108/126 (85%) Strand = Plus / Minus Query: 19 gctcaggctggaacttcatcggaagaagggtatgtctgaagaacgtaanccgggtcgccg 78 ||||| |||||| ||||||||||||||||| || ||| |||||| ||| |||| |||| | Sbjct: 1071 gctcatgctggagcttcatcggaagaagggaatctctcaagaacataaaccggatcgctg 1012 Query: 79 accttgacgatcctccctttgccctttgctgatnccgattccttgcagaccagattttgc 138 ||||||| |||||| |||||||||||||| || |||||||||||||| | ||||||| Sbjct: 1011 accttgatgatccttcctttgccctttgcagacagagattccttgcagactaaattttgc 952 Query: 139 ccaaag 144 |||||| Sbjct: 951 ccaaag 946
>dbj|AK101993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079H04, full insert sequence Length = 1218 Score = 77.8 bits (39), Expect = 8e-12 Identities = 103/125 (82%) Strand = Plus / Minus Query: 19 gctcaggctggaacttcatcggaagaagggtatgtctgaagaacgtaanccgggtcgccg 78 ||||| |||||||||||||| ||||||||| ||| || |||||| ||| | || |||||| Sbjct: 1015 gctcatgctggaacttcatctgaagaagggaatgactcaagaacataaactggatcgccg 956 Query: 79 accttgacgatcctccctttgccctttgctgatnccgattccttgcagaccagattttgc 138 ||||||| |||||| |||| | ||||| || |||||||||||||| | ||||||| Sbjct: 955 accttgatgatccttccttcatcttttgccgacagagattccttgcagactaaattttgc 896 Query: 139 ccaaa 143 ||||| Sbjct: 895 ccaaa 891
>gb|AC110012.5| Homo sapiens chromosome 8, clone CTD-2024L13, complete sequence Length = 163126 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tcctccctttgccctttgct 108 |||||||||||||||||||| Sbjct: 59635 tcctccctttgccctttgct 59616
>gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region, complete sequence Length = 145356 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ctccctttgccctttgctga 110 |||||||||||||||||||| Sbjct: 25306 ctccctttgccctttgctga 25325
>gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete sequence Length = 192592 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ctccctttgccctttgctga 110 |||||||||||||||||||| Sbjct: 137655 ctccctttgccctttgctga 137674
>gb|AC007731.16| Homo sapiens chromosome 22 clone b562f10 map 22q11, complete sequence Length = 182617 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ctccctttgccctttgctga 110 |||||||||||||||||||| Sbjct: 142715 ctccctttgccctttgctga 142734
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 ccgggtcgccgaccttgac 86 ||||||||||||||||||| Sbjct: 122746 ccgggtcgccgaccttgac 122764
>gb|AC104186.2| Homo sapiens chromosome 3 clone RP11-391M1, complete sequence Length = 186317 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 ccctttgccctttgctgat 111 ||||||||||||||||||| Sbjct: 30095 ccctttgccctttgctgat 30113
>gb|AE009742.1| Brucella melitensis 16M chromosome II, section 104 of 107 of the complete sequence Length = 11085 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 ccgggtcgccgaccttgac 86 ||||||||||||||||||| Sbjct: 6660 ccgggtcgccgaccttgac 6642
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 ccgggtcgccgaccttgac 86 ||||||||||||||||||| Sbjct: 122075 ccgggtcgccgaccttgac 122093
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 ccgggtcgccgaccttgac 86 ||||||||||||||||||| Sbjct: 122138 ccgggtcgccgaccttgac 122156
>gb|L01477.1|RABCOL4AA Rabbit collagen type IV mRNA sequence Length = 2459 Score = 38.2 bits (19), Expect = 6.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 89 tcctccctttgccctttgctgat 111 |||||||| |||||||||||||| Sbjct: 2051 tcctccctctgccctttgctgat 2073 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 863,691 Number of Sequences: 3902068 Number of extensions: 863691 Number of successful extensions: 61532 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61469 Number of HSP's gapped (non-prelim): 58 length of query: 144 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 123 effective length of database: 17,151,101,840 effective search space: 2109585526320 effective search space used: 2109585526320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
