ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7b21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL23_TRYCR (Q94776) 60S ribosomal protein L23 (L17) (TCEST082) 31 1.4
2JMT_BRARP (Q9SBK6) Jasmonate O-methyltransferase (EC 2.1.1.141) ... 30 4.2
3RNY1_ASHGO (Q75BW5) Ribonuclease T2-like precursor (EC 3.1.27.1)... 30 4.2
4PEPQ_LACHE (O84913) Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dip... 29 5.5
5Y4WG_RHISN (P55685) Hypothetical 19.4 kDa protein y4wG 29 5.5
6MURG_HELHP (Q7U322) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 29 5.5
7LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent ... 28 9.4
8SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr... 28 9.4
9LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-la... 28 9.4
10VL1_HPV26 (P36735) Major capsid protein L1 28 9.4
11PMPC_CHLMU (Q9PJY1) Probable outer membrane protein pmpC precurs... 28 9.4
12BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 ... 28 9.4
13MG44_TARMA (P40653) SRY-related protein MG44 (Fragment) 28 9.4

>RL23_TRYCR (Q94776) 60S ribosomal protein L23 (L17) (TCEST082)|
          Length = 141

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -1

Query: 468 LTAASIKTGRPQIARR---AIDLAERRLL--KDGWPEYYDGKLGKYVGKQARKFQTWSIA 304
           +  AS+K G+P++ R+   A+ + +R+    KDG   Y++   G  V  Q R  +   IA
Sbjct: 59  IVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIA 118

Query: 303 G 301
           G
Sbjct: 119 G 119



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>JMT_BRARP (Q9SBK6) Jasmonate O-methyltransferase (EC 2.1.1.141)|
           (S-adenosyl-L-methionine:jasmonic acid carboxyl
           methyltransferase) (Floral nectary-specific protein 1)
          Length = 392

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = +2

Query: 83  KIFRWESQNKG*AEKCYAKNSCFQS------RRCSPXXLVYQFVHEADLLKTGFIALSSS 244
           ++ R    NKG  E  YAKNS  QS      RR     L    +  +++L  G   L  S
Sbjct: 2   EVMRILHMNKGNGETSYAKNSIVQSNIISLGRRVMDEALKKLMIRNSEILSFGIADLGCS 61

Query: 245 KAIIPRCEGSSSNILAT 295
               P    S SNI+ T
Sbjct: 62  SG--PNSLLSISNIVET 76



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>RNY1_ASHGO (Q75BW5) Ribonuclease T2-like precursor (EC 3.1.27.1) (RNase|
           T2-like)
          Length = 292

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 331 CLLANIFSKFTIVILRPAILQQPPLS*VNCSSCNLRXSSFDACCREQP 474
           CLL++ F +F      P +   P  S    S+C    +  D CC E P
Sbjct: 18  CLLSHAFQEFITKFPMPMMYNFPSCSSTIPSTCRNETAIADTCCFEYP 65



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>PEPQ_LACHE (O84913) Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase)|
           (Proline dipeptidase) (Prolidase) (Imidodipeptidase)
          Length = 368

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 459 ASIKTGRPQIARRAIDLAERRLL-KDGWPEYYDGKLGKYVGKQARKF 322
           A+I+  +P I    +D   R ++ K G+ EY+  +LG  +GK   ++
Sbjct: 261 AAIEAAKPGITAEELDSVARDIITKAGYGEYFIHRLGHGIGKNVHEY 307



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>Y4WG_RHISN (P55685) Hypothetical 19.4 kDa protein y4wG|
          Length = 181

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 342 GKQARKFQTWSIAGYLVAKMLLEDPSHLGMIAL 244
           GK+ RKF+ ++ AG+ V   L  D S+ GM+++
Sbjct: 111 GKEERKFKPFAAAGFSVRAGLAADGSNSGMLSI 143



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>MURG_HELHP (Q7U322) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 350

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 191 FVHEADLLKTGF--IALSSSKAIIPRCEGSSSNILATKYPAIDQ 316
           F+HE + +K     I    +KAI    EG S N + T YP  D+
Sbjct: 118 FIHEQNAIKGKLNEILTPFAKAIFGSFEGKSKNFIHTSYPVRDE 161



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>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent|
            alpha-latrotoxin receptor 1) (CIRL-1)
          Length = 1515

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 244  GRGQGNEASFEKVRLMDKLIHKXXRGATSGLK 149
            GR   + A+FEK+ ++ +L+H   RGA+ G K
Sbjct: 1314 GRNLADAAAFEKM-IISELVHNNLRGASGGAK 1344



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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
 Frame = +3

Query: 60   SRGIQKKIKFSVGKVKTRDEQRNATRRIRVFNPDVAPLXLLCISLSMRR-----TFSKLA 224
            SRG+QK   FS G+ + R   R A           APL +    L  RR     + S L+
Sbjct: 2127 SRGLQKSSSFSQGEAEPRGRHRRAG----------APLEIPVARLGARRLQESPSLSALS 2176

Query: 225  SLPCP------LPRLSYQDVKDPPATSWRPNTQ 305
                P      +P+LS     +P A + R + Q
Sbjct: 2177 ETQPPSPARPSVPKLSITKSPEPSAVTSRDSPQ 2209



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>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin receptor|
            1) (Lectomedin-2) (Fragment)
          Length = 1406

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 244  GRGQGNEASFEKVRLMDKLIHKXXRGATSGLK 149
            GR   + A+FEK+ ++ +L+H   RGA+ G K
Sbjct: 1205 GRNLADAAAFEKM-IISELVHNNLRGASGGAK 1235



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>VL1_HPV26 (P36735) Major capsid protein L1|
          Length = 503

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 137 KNSCFQSRRCSPXXLVYQFVHEADLLKTG-----FIALSSSKAIIP 259
           KN+  Q   C P  L+   + + D++ TG     F AL ++K+ +P
Sbjct: 175 KNTQTQRGDCPPLELISSIIEDGDMIDTGFGAMDFTALQATKSDVP 220



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>PMPC_CHLMU (Q9PJY1) Probable outer membrane protein pmpC precursor|
           (Polymorphic membrane protein C)
          Length = 1460

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -2

Query: 197 GQTDTQEX*GSNVWIENTNSSRSISLLIPCFDFPNGKFYFLLNSSAVQYLSSFIELEKKQ 18
           G TD+ E   +N    NT S   +S   P    PN    FL   S+V   S  I+ E + 
Sbjct: 308 GNTDSNESNPNNSASNNTGSENELSSSTPSAQLPNPATPFL---SSVSTNSQPIDTEPEN 364

Query: 17  LW 12
            W
Sbjct: 365 AW 366



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>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC|
            2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2)
            (Protein VASCULAR HIGHWAY 1)
          Length = 1143

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 62   PRNSEENKIFRWESQNKG*AEKCYAKNSCFQSRRCSP 172
            PR  E+ +I  WE + K    K  AK  CF    C P
Sbjct: 926  PRTGEKRRILGWEERKK--IAKGAAKGLCFLHHNCIP 960



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>MG44_TARMA (P40653) SRY-related protein MG44 (Fragment)|
          Length = 72

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 441 RPQIARRAIDLAERRLLKDGWPEYYDGKLGKYVGKQARKFQ 319
           RP  A       ERR + D WP+ ++ ++ K +G+ ++  Q
Sbjct: 3   RPMNAFMVWSQNERRKIMDQWPDMHNAEISKSLGRSSQLLQ 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,760,061
Number of Sequences: 219361
Number of extensions: 1394519
Number of successful extensions: 3952
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3951
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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