ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7b16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y10783.1|SSY10783 S.stapfianus pSD.39 mRNA 72 3e-09
2ref|XM_474580.1| Oryza sativa (japonica cultivar-group), predic... 66 2e-07
3emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4,... 66 2e-07
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
5dbj|AK104586.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
6dbj|AK067285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
7emb|AL442113.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 66 2e-07
8ref|XM_512411.1| PREDICTED: Pan troglodytes transportin 2 (impor... 44 0.57
9ref|NM_013433.3| Homo sapiens transportin 2 (importin 3, karyoph... 44 0.57
10gb|BC072420.1| Homo sapiens transportin 2 (importin 3, karyopher... 44 0.57
11gb|BC063679.1| Homo sapiens cDNA clone IMAGE:4358892, **** WARNI... 44 0.57
12gb|BC018314.1| Homo sapiens transportin 2 (importin 3, karyopher... 44 0.57
13emb|CR385069.8| Zebrafish DNA sequence from clone DKEY-22C20 in ... 44 0.57
14dbj|AK056183.1| Homo sapiens cDNA FLJ31621 fis, clone NT2RI20032... 44 0.57
15gb|AC018761.6| Homo sapiens chromosome 19 clone CTD-2659N19, com... 44 0.57
16dbj|AB210011.1| Homo sapiens mRNA for TNPO2 variant protein, par... 44 0.57
17gb|AF019039.1|AF019039 Homo sapiens transportin2 mRNA, complete cds 44 0.57
18gb|AF007748.1|AF007748 Homo sapiens karyopherin beta2b homolog m... 44 0.57
19gb|BC059982.1| Xenopus laevis hypothetical protein MGC68668, mRN... 42 2.2
20gb|AC118141.4| Homo sapiens BAC clone RP11-610O8 from 4, complet... 42 2.2
21gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J... 42 2.2
22gb|AC115289.6| Mus musculus BAC clone RP23-57G16 from 13, comple... 42 2.2
23ref|XM_508443.1| PREDICTED: Pan troglodytes similar to seven tra... 40 8.9
24gb|AC124659.10| Mus musculus chromosome 15, clone RP24-167K18, c... 40 8.9
25gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.9
26gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 8.9
27gb|AY319377.1| Musca domestica scute mRNA, complete cds 40 8.9
28ref|XM_569999.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 8.9
29gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, co... 40 8.9
30gb|AE017160.1| Chlamydophila pneumoniae TW-183, section 4 of 4 o... 40 8.9
31emb|AL031390.4|HS197L1 Human DNA sequence from clone RP1-197L1 o... 40 8.9
32ref|XM_962312.1| PREDICTED: Tribolium castaneum similar to CG301... 40 8.9
33gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosom... 40 8.9
34dbj|AK220300.1| Mus musculus mRNA for mKIAA4200 protein 40 8.9
35gb|AC093958.2| Drosophila melanogaster 3L BAC RP98-48M7 (Roswell... 40 8.9
36gb|AF357522.1| Pfiesteria piscicida clone PpcytbG3 mitochondrial... 40 8.9
37gb|AF357521.1| Pfiesteria piscicida clone PpcytbG2 cytochrome b ... 40 8.9
38gb|AF357520.1| Pfiesteria piscicida clone PpcytbG1 cytochrome b ... 40 8.9
39gb|AC108132.2| Homo sapiens chromosome 16 clone RP11-404F5, comp... 40 8.9
40dbj|AK139888.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 40 8.9
41gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome 40 8.9
42gb|AC010255.9|AC010255 Homo sapiens chromosome 5 clone CTC-441N1... 40 8.9
43ref|NG_004178.1| Homo sapiens olfactory receptor, family 9, subf... 40 8.9
44tpg|BK004808.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR... 40 8.9
45tpg|BK004734.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR... 40 8.9
46gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome 40 8.9
47dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, compl... 40 8.9
48gb|AC116736.14| Mus musculus chromosome 3, clone RP23-370O17, co... 40 8.9
49emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 8.9
50gb|AF134216.2|AF134216 Boophilus microplus putative sodium chann... 40 8.9
51gb|AE003480.4| Drosophila melanogaster chromosome 3L, section 14... 40 8.9
52ref|NM_145470.2| Mus musculus DEP domain containing 6 (Depdc6), ... 40 8.9
53ref|NM_001037937.1| Mus musculus DEP domain containing 6 (Depdc6... 40 8.9
54gb|AY067537.1| Schmidtea mediterranea clone H.110.12c(T3) unknow... 40 8.9
55dbj|AB065732.1| Homo sapiens gene for seven transmembrane helix ... 40 8.9
56emb|AL807765.6| Mouse DNA sequence from clone RP23-478J19 on chr... 40 8.9
57dbj|AP004247.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.9 
>emb|Y10783.1|SSY10783 S.stapfianus pSD.39 mRNA
          Length = 1124

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 352 ccaaccagggcagcaacaacaaccgcaccccagatagtgttggtctccttagcttggtca 411
           ||||| |||||||||||||| ||| ||  ||||||||  ||||| ||||| ||||||| |
Sbjct: 705 ccaacaagggcagcaacaaccaccacagaccagatagcattggtttcctttgcttggtga 646

                                           
Query: 412 tacaggcatgacatgtgcttcttcagccagca 443
           |||||||| | ||| |||||||||| ||||||
Sbjct: 645 tacaggcaagtcatatgcttcttcaaccagca 614
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>ref|XM_474580.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 777

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 397 tccttagcttggtcatacaggcatgacatgtgcttcttcagccagcactggcagggggca 456
           ||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||| 
Sbjct: 647 tccttggcttggtgatacaggcatgacatatgtttcttcagccagcatttgcaaggggcg 588

                
Query: 457 ccaga 461
           |||||
Sbjct: 587 ccaga 583
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>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23,
             complete sequence
          Length = 150305

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 397   tccttagcttggtcatacaggcatgacatgtgcttcttcagccagcactggcagggggca 456
             ||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||| 
Sbjct: 37765 tccttggcttggtgatacaggcatgacatatgtttcttcagccagcatttgcaaggggcg 37706

                  
Query: 457   ccaga 461
             |||||
Sbjct: 37705 ccaga 37701
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                           
Query: 397     tccttagcttggtcatacaggcatgacatgtgcttcttcagccagcactggcagggggca 456
               ||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||| 
Sbjct: 4410033 tccttggcttggtgatacaggcatgacatatgtttcttcagccagcatttgcaaggggcg 4409974

                    
Query: 457     ccaga 461
               |||||
Sbjct: 4409973 ccaga 4409969
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>dbj|AK104586.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G01, full
           insert sequence
          Length = 1358

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 397 tccttagcttggtcatacaggcatgacatgtgcttcttcagccagcactggcagggggca 456
           ||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||| 
Sbjct: 789 tccttggcttggtgatacaggcatgacatatgtttcttcagccagcatttgcaaggggcg 730

                
Query: 457 ccaga 461
           |||||
Sbjct: 729 ccaga 725
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>dbj|AK067285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099G21, full
           insert sequence
          Length = 1492

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 397 tccttagcttggtcatacaggcatgacatgtgcttcttcagccagcactggcagggggca 456
           ||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||| 
Sbjct: 814 tccttggcttggtgatacaggcatgacatatgtttcttcagccagcatttgcaaggggcg 755

                
Query: 457 ccaga 461
           |||||
Sbjct: 754 ccaga 750
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>emb|AL442113.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete
             sequence
          Length = 102515

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 397   tccttagcttggtcatacaggcatgacatgtgcttcttcagccagcactggcagggggca 456
             ||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||| 
Sbjct: 74313 tccttggcttggtgatacaggcatgacatatgtttcttcagccagcatttgcaaggggcg 74254

                  
Query: 457   ccaga 461
             |||||
Sbjct: 74253 ccaga 74249
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>ref|XM_512411.1| PREDICTED: Pan troglodytes transportin 2 (importin 3, karyopherin
           beta 2b) (LOC455748), mRNA
          Length = 2960

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 gatctgtgaagactcatcagag 220
           ||||||||||||||||||||||
Sbjct: 645 gatctgtgaagactcatcagag 666
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>ref|NM_013433.3| Homo sapiens transportin 2 (importin 3, karyopherin beta 2b)
           (TNPO2), mRNA
          Length = 4901

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 gatctgtgaagactcatcagag 220
           ||||||||||||||||||||||
Sbjct: 600 gatctgtgaagactcatcagag 621
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>gb|BC072420.1| Homo sapiens transportin 2 (importin 3, karyopherin beta 2b), mRNA
           (cDNA clone MGC:90166 IMAGE:6184325), complete cds
          Length = 4901

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 gatctgtgaagactcatcagag 220
           ||||||||||||||||||||||
Sbjct: 600 gatctgtgaagactcatcagag 621
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>gb|BC063679.1| Homo sapiens cDNA clone IMAGE:4358892, **** WARNING: chimeric clone
           ****
          Length = 1899

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 gatctgtgaagactcatcagag 220
           ||||||||||||||||||||||
Sbjct: 481 gatctgtgaagactcatcagag 502
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>gb|BC018314.1| Homo sapiens transportin 2 (importin 3, karyopherin beta 2b), mRNA
           (cDNA clone IMAGE:4154236), containing frame-shift
           errors
          Length = 2377

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 gatctgtgaagactcatcagag 220
           ||||||||||||||||||||||
Sbjct: 518 gatctgtgaagactcatcagag 539
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>emb|CR385069.8| Zebrafish DNA sequence from clone DKEY-22C20 in linkage group 13,
             complete sequence
          Length = 68470

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 103   caaacttaatattattacaact 124
             ||||||||||||||||||||||
Sbjct: 52529 caaacttaatattattacaact 52508
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>dbj|AK056183.1| Homo sapiens cDNA FLJ31621 fis, clone NT2RI2003205, highly similar to
            Homo sapiens transportin2 mRNA
          Length = 2836

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 199  gatctgtgaagactcatcagag 220
            ||||||||||||||||||||||
Sbjct: 1153 gatctgtgaagactcatcagag 1174
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>gb|AC018761.6| Homo sapiens chromosome 19 clone CTD-2659N19, complete sequence
          Length = 147750

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 199   gatctgtgaagactcatcagag 220
             ||||||||||||||||||||||
Sbjct: 60234 gatctgtgaagactcatcagag 60213
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>dbj|AB210011.1| Homo sapiens mRNA for TNPO2 variant protein, partial cds, clone:
            fh13310
          Length = 4993

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 199  gatctgtgaagactcatcagag 220
            ||||||||||||||||||||||
Sbjct: 1194 gatctgtgaagactcatcagag 1215
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>gb|AF019039.1|AF019039 Homo sapiens transportin2 mRNA, complete cds
          Length = 2926

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 gatctgtgaagactcatcagag 220
           ||||||||||||||||||||||
Sbjct: 580 gatctgtgaagactcatcagag 601
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>gb|AF007748.1|AF007748 Homo sapiens karyopherin beta2b homolog mRNA, complete cds
          Length = 3027

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 199 gatctgtgaagactcatcagag 220
           ||||||||||||||||||||||
Sbjct: 747 gatctgtgaagactcatcagag 768
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>gb|BC059982.1| Xenopus laevis hypothetical protein MGC68668, mRNA (cDNA clone
           MGC:68668 IMAGE:4032881), complete cds
          Length = 3359

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 439 cagcactggcagggggcacca 459
           |||||||||||||||||||||
Sbjct: 411 cagcactggcagggggcacca 431
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>gb|AC118141.4| Homo sapiens BAC clone RP11-610O8 from 4, complete sequence
          Length = 80438

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 512   cctgggaatcatcatcatgga 532
             |||||||||||||||||||||
Sbjct: 55566 cctgggaatcatcatcatgga 55546
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>gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete
             sequence
          Length = 103157

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    ctgtcaaacttaatattatta 119
             |||||||||||||||||||||
Sbjct: 44996 ctgtcaaacttaatattatta 44976
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>gb|AC115289.6| Mus musculus BAC clone RP23-57G16 from 13, complete sequence
          Length = 210109

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 171    ttcttcttggttataatgact 191
              |||||||||||||||||||||
Sbjct: 156152 ttcttcttggttataatgact 156132
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>ref|XM_508443.1| PREDICTED: Pan troglodytes similar to seven transmembrane helix
           receptor (LOC451204), mRNA
          Length = 1829

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 cagggtgatctgtgaagact 212
           ||||||||||||||||||||
Sbjct: 64  cagggtgatctgtgaagact 45
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>gb|AC124659.10| Mus musculus chromosome 15, clone RP24-167K18, complete sequence
          Length = 180859

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   accagtccaggaattcggat 273
             ||||||||||||||||||||
Sbjct: 99214 accagtccaggaattcggat 99195
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
               sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 427     tgcttcttcagccagcactg 446
               ||||||||||||||||||||
Sbjct: 1189272 tgcttcttcagccagcactg 1189291
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 428     gcttcttcagccagcactggcagg 451
               ||||||||||||||| ||||||||
Sbjct: 5145099 gcttcttcagccagcgctggcagg 5145076
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>gb|AY319377.1| Musca domestica scute mRNA, complete cds
          Length = 1011

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 gcagcaacaacaaccgcacc 380
           ||||||||||||||||||||
Sbjct: 834 gcagcaacaacaaccgcacc 853
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>ref|XM_569999.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNC03800) partial mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 427 tgcttcttcagccagcactg 446
           ||||||||||||||||||||
Sbjct: 552 tgcttcttcagccagcactg 533
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>gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, complete sequence
          Length = 236182

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    ccccagatagtgttggtctc 398
              ||||||||||||||||||||
Sbjct: 197591 ccccagatagtgttggtctc 197610
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>gb|AE017160.1| Chlamydophila pneumoniae TW-183, section 4 of 4 of the complete genome
          Length = 324746

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   agggcagcaacaacaaccgc 377
             ||||||||||||||||||||
Sbjct: 13462 agggcagcaacaacaaccgc 13481
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>emb|AL031390.4|HS197L1 Human DNA sequence from clone RP1-197L1 on chromosome 6q24.1-25.2
             Contains a pseudogene similar to a hypothetical mouse
             protein, the gene for hypothetical protein MGC3133 and
             part of the PLAGL1 gene for pleiomorphic adenoma gene-like
             1 (PLAG-like 1, LOT1, ZAC, ZAC tumor suppressor). Contains
             two CpG islands, complete sequence
          Length = 101846

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    aggacaagagcaagaagaaa 61
             ||||||||||||||||||||
Sbjct: 58251 aggacaagagcaagaagaaa 58270
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>ref|XM_962312.1| PREDICTED: Tribolium castaneum similar to CG30122-PB (LOC655750),
           mRNA
          Length = 911

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 355 accagggcagcaacaacaaccgca 378
           |||||||||||||| |||||||||
Sbjct: 363 accagggcagcaactacaaccgca 386
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>gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosome 13, complete sequence
          Length = 195714

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    aagaacaccacaaacagacc 252
              ||||||||||||||||||||
Sbjct: 161081 aagaacaccacaaacagacc 161100
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>dbj|AK220300.1| Mus musculus mRNA for mKIAA4200 protein
          Length = 1890

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 accagtccaggaattcggat 273
           ||||||||||||||||||||
Sbjct: 535 accagtccaggaattcggat 516
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>gb|AC093958.2| Drosophila melanogaster 3L BAC RP98-48M7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174373

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   agcaacaacaaccgcacccc 382
             ||||||||||||||||||||
Sbjct: 28466 agcaacaacaaccgcacccc 28447
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>gb|AF357522.1| Pfiesteria piscicida clone PpcytbG3 mitochondrial cytochrome b
           pseudogene, partial sequence
          Length = 977

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 catcttcttcttggttataa 186
           ||||||||||||||||||||
Sbjct: 339 catcttcttcttggttataa 320
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>gb|AF357521.1| Pfiesteria piscicida clone PpcytbG2 cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1861

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 catcttcttcttggttataa 186
           ||||||||||||||||||||
Sbjct: 339 catcttcttcttggttataa 320
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>gb|AF357520.1| Pfiesteria piscicida clone PpcytbG1 cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 3404

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 catcttcttcttggttataa 186
           ||||||||||||||||||||
Sbjct: 339 catcttcttcttggttataa 320
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>gb|AC108132.2| Homo sapiens chromosome 16 clone RP11-404F5, complete sequence
          Length = 173198

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    aaactttggcatctcacaggcctg 82
             ||||||||||||| ||||||||||
Sbjct: 54133 aaactttggcatcacacaggcctg 54156
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>dbj|AK139888.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
           clone:B020032E21 product:DEP domain containing 6, full
           insert sequence
          Length = 3302

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 accagtccaggaattcggat 273
           ||||||||||||||||||||
Sbjct: 523 accagtccaggaattcggat 504
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>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome
          Length = 1229853

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 358     agggcagcaacaacaaccgc 377
               ||||||||||||||||||||
Sbjct: 1154114 agggcagcaacaacaaccgc 1154095
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>gb|AC010255.9|AC010255 Homo sapiens chromosome 5 clone CTC-441N14, complete sequence
          Length = 215111

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    ctgtcaaacttaatattattacaa 122
             |||||| |||||||||||||||||
Sbjct: 85371 ctgtcacacttaatattattacaa 85348
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>ref|NG_004178.1| Homo sapiens olfactory receptor, family 9, subfamily I, member 3
           pseudogene (OR9I3P) on chromosome 11
          Length = 1142

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 cagggtgatctgtgaagact 212
           ||||||||||||||||||||
Sbjct: 164 cagggtgatctgtgaagact 145
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>tpg|BK004808.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR11-225 pseudogene,
           complete sequence
          Length = 967

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 cagggtgatctgtgaagact 212
           ||||||||||||||||||||
Sbjct: 64  cagggtgatctgtgaagact 45
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>tpg|BK004734.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR11-227 pseudogene,
           complete sequence
          Length = 966

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 cagggtgatctgtgaagact 212
           ||||||||||||||||||||
Sbjct: 64  cagggtgatctgtgaagact 45
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>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome
          Length = 1230230

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    agggcagcaacaacaaccgc 377
              ||||||||||||||||||||
Sbjct: 917328 agggcagcaacaacaaccgc 917347
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>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence
          Length = 1226565

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    agggcagcaacaacaaccgc 377
              ||||||||||||||||||||
Sbjct: 916650 agggcagcaacaacaaccgc 916669
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>gb|AC116736.14| Mus musculus chromosome 3, clone RP23-370O17, complete sequence
          Length = 180168

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 379    ccccagatagtgttggtctc 398
              ||||||||||||||||||||
Sbjct: 163605 ccccagatagtgttggtctc 163586
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    caaccagggcagcaacaaca 372
              ||||||||||||||||||||
Sbjct: 457204 caaccagggcagcaacaaca 457223
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>gb|AF134216.2|AF134216 Boophilus microplus putative sodium channel mRNA, partial cds
          Length = 3599

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 508 ttgtcctgggaatcatcatc 527
           ||||||||||||||||||||
Sbjct: 206 ttgtcctgggaatcatcatc 225
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>gb|AE003480.4| Drosophila melanogaster chromosome 3L, section 14 of 83 of the complete
              sequence
          Length = 311933

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    agcaacaacaaccgcacccc 382
              ||||||||||||||||||||
Sbjct: 126264 agcaacaacaaccgcacccc 126245
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>ref|NM_145470.2| Mus musculus DEP domain containing 6 (Depdc6), transcript variant
           1, mRNA
          Length = 1890

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 accagtccaggaattcggat 273
           ||||||||||||||||||||
Sbjct: 535 accagtccaggaattcggat 516
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>ref|NM_001037937.1| Mus musculus DEP domain containing 6 (Depdc6), transcript variant
           2, mRNA
          Length = 3302

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 accagtccaggaattcggat 273
           ||||||||||||||||||||
Sbjct: 523 accagtccaggaattcggat 504
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>gb|AY067537.1| Schmidtea mediterranea clone H.110.12c(T3) unknown mRNA sequence
          Length = 597

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 507 cttgtcctgggaatcatcat 526
           ||||||||||||||||||||
Sbjct: 253 cttgtcctgggaatcatcat 272
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>dbj|AB065732.1| Homo sapiens gene for seven transmembrane helix receptor, complete
           cds, isolate:CBRC7TM_295
          Length = 1102

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 cagggtgatctgtgaagact 212
           ||||||||||||||||||||
Sbjct: 264 cagggtgatctgtgaagact 245
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>emb|AL807765.6| Mouse DNA sequence from clone RP23-478J19 on chromosome X, complete
            sequence
          Length = 48105

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  gtgcttcttcagccagcact 445
            ||||||||||||||||||||
Sbjct: 2162 gtgcttcttcagccagcact 2181
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>dbj|AP004247.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-659P15, complete
             sequence
          Length = 203084

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   cagggtgatctgtgaagact 212
             ||||||||||||||||||||
Sbjct: 71074 cagggtgatctgtgaagact 71093


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,337,147
Number of Sequences: 3902068
Number of extensions: 6337147
Number of successful extensions: 122883
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122660
Number of HSP's gapped (non-prelim): 223
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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