ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7b14 |
|---|---|
| Clone Library Name | barley_pub |
>JI60_HORVU (Q00531) 60 kDa jasmonate-induced protein (EC 3.2.2.22) (rRNA| N-glycosidase) Length = 560 Score = 298 bits (762), Expect(2) = 1e-92 Identities = 148/148 (100%), Positives = 148/148 (100%) Frame = -1 Query: 601 NYNKAISETVLTRCGPAEVIYAVLSNGVQGRVDVKLAGLQSRDEVVLVGRIVARSKLFDF 422 NYNKAISETVLTRCGPAEVIYAVLSNGVQGRVDVKLAGLQSRDEVVLVGRIVARSKLFDF Sbjct: 413 NYNKAISETVLTRCGPAEVIYAVLSNGVQGRVDVKLAGLQSRDEVVLVGRIVARSKLFDF 472 Query: 421 GCVLFYNEAAGVRVRPGELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTA 242 GCVLFYNEAAGVRVRPGELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTA Sbjct: 473 GCVLFYNEAAGVRVRPGELVPLARHALAVPLHMPLTIELDIRHGGSGDEIVRGELEFKTA 532 Query: 241 IDGLHTGRLVGVNDAEFEVTILWSEYPW 158 IDGLHTGRLVGVNDAEFEVTILWSEYPW Sbjct: 533 IDGLHTGRLVGVNDAEFEVTILWSEYPW 560 Score = 62.4 bits (150), Expect(2) = 1e-92 Identities = 28/30 (93%), Positives = 28/30 (93%) Frame = -3 Query: 692 HDGTRGQADEEEDEKNTGRIVCDAIGGDFS 603 HDG GQADEEEDEKNTGRIVCDAIGGDFS Sbjct: 383 HDGNCGQADEEEDEKNTGRIVCDAIGGDFS 412
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 36.2 bits (82), Expect = 0.098 Identities = 40/159 (25%), Positives = 58/159 (36%), Gaps = 4/159 (2%) Frame = +3 Query: 177 KIVTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLA 356 K+ T+ + T T P P A+ + P+ I + GT Sbjct: 2579 KVPTTTTTGFTAT--PSSSPGTAL---TPPVWISTTTTPTTRGSTVTPSSIPGTTHTATV 2633 Query: 357 KGTSSP----GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 524 T++ G TP++S S P S + TI T +T++ P+S TRP P Sbjct: 2634 LTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTRPIPP 2689 Query: 525 LLRTA*ITSAGPQRVRTVSDMALL*LGEVAANGVAHYPP 641 +L T T A T S +A G H PP Sbjct: 2690 VLTTTATTPAATSSTVTPS----------SALGTTHTPP 2718 Score = 33.9 bits (76), Expect = 0.48 Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 4/159 (2%) Frame = +3 Query: 177 KIVTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLA 356 K+ T+ + T T P P A+ + P+ I + GT Sbjct: 3277 KVPTTTTTGFTAT--PSSSPGTAL---TPPVWISTTTTPTTRGSTVTPSSIPGTTHTATV 3331 Query: 357 KGTSSP----GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 524 T++ G TP++S S P S + TI T +T++ P+S T P P Sbjct: 3332 LTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTTPIPP 3387 Query: 525 LLRTA*ITSAGPQRVRTVSDMALL*LGEVAANGVAHYPP 641 +L T T A T S +A G H PP Sbjct: 3388 VLTTTATTPAATSSTVTPS----------SALGTTHTPP 3416 Score = 32.7 bits (73), Expect = 1.1 Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 4/159 (2%) Frame = +3 Query: 177 KIVTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLA 356 K++T+ + T T P P A + P+ I + GT Sbjct: 2050 KVLTTTTTGFTAT--PSSSPGRA---RTLPVWISTTTTPTTRGSTVTPSSIPGTTHTPTV 2104 Query: 357 KGTSSP----GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 524 T++ G TP++S S P S + TI T +T++ P+S T P P Sbjct: 2105 LTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTTPIPP 2160 Query: 525 LLRTA*ITSAGPQRVRTVSDMALL*LGEVAANGVAHYPP 641 +L T T A T S +A G H PP Sbjct: 2161 VLTTTATTPAATSSTVTPS----------SALGTTHTPP 2189 Score = 32.0 bits (71), Expect = 1.8 Identities = 32/132 (24%), Positives = 49/132 (37%) Frame = +3 Query: 186 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGT 365 +S +LTP PVW + +++P T + G T Sbjct: 4548 SSPGTALTP---PVW-----ISTTTTPTTTTPTTSGSTVTPSSIPGTTHTARVLTTTTTT 4599 Query: 366 SSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTPLLRTA*I 545 + G TP++S S P S + TI T +T++ P+S T P P+L + Sbjct: 4600 VATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTN----PSSTPGTTPIPPVLTSMAT 4655 Query: 546 TSAGPQRVRTVS 581 T A T S Sbjct: 4656 TPAATSSKATSS 4667 Score = 29.6 bits (65), Expect = 9.1 Identities = 40/156 (25%), Positives = 57/156 (36%), Gaps = 3/156 (1%) Frame = +3 Query: 183 VTSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKG 362 VT +S+ T PVW + +++P T S + T + + Sbjct: 3817 VTPSSSPGTARTPPVW-----ISTTTTPTT--------SGSTVTPSSIPGTTHTPTVLTT 3863 Query: 363 TSSP---GRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTPLLR 533 T+ P G TP++S S P S TI T +T++ P+S T P P L Sbjct: 3864 TTQPVATGSMATPSSSTQTSGTPPSLITTATTITATGSTTN----PSSTPGTTPIPPELT 3919 Query: 534 TA*ITSAGPQRVRTVSDMALL*LGEVAANGVAHYPP 641 T T A T S +A G H PP Sbjct: 3920 TTATTPAATSSTVTPS----------SALGTTHTPP 3945
>MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment)| Length = 610 Score = 32.7 bits (73), Expect = 1.1 Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Frame = +3 Query: 186 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXX--IVSGMCSGTASACLAK 359 TS++++ T PV S A ++PL + +V+ S + Sbjct: 465 TSSASTSHATSLPVTDTSSASTGHATPLPVTDTSSASTGHATPLLVTDTSSASTGHTTPL 524 Query: 360 GTSSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTPLLRT 536 +SP T A+ T P S S AT LP TSS ST TPLL T Sbjct: 525 HVTSPSSASTGHATPLPVTSPSSASTSHATSLPVTDTSS--------ASTGHATPLLVT 575
>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2| Length = 306 Score = 32.3 bits (72), Expect = 1.4 Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 7/114 (6%) Frame = +3 Query: 204 LTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGTSSPGRT 383 L P RP R A L S P+T + C+G C A ++P Sbjct: 132 LEPRARPSGRTPPAQLRSPWPMTAAGPASRARASETGSTASCAGRWRTCCA-AAAAPSAA 190 Query: 384 RTPAASL*KSTQPKSNSLLRATILP-------TRTTSSRDCRPASFTSTRPWTP 524 R+ +A +ST +S RA P TRT + R T PW P Sbjct: 191 RSASARTGRST----SSCARAARAPSATEGALTRTPAPRRPLQRRRPGTGPWRP 240
>MUTS_BACAN (Q81WR3) DNA mismatch repair protein mutS| Length = 892 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 398 LVVEEHTAEIEQLAASNDPADENHFVSGLQASKLHIDPALDA 523 +VV+E EIE+ N+ + F Q+SK PALDA Sbjct: 815 IVVKEEPIEIEETKVDNEEESQLSFFGAEQSSKKQDKPALDA 856
>CHI3_CANAL (P40954) Chitinase 3 precursor (EC 3.2.1.14)| Length = 567 Score = 30.8 bits (68), Expect = 4.1 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 5/137 (3%) Frame = +3 Query: 186 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGT 365 TS+S + T T + ++SSS + +S S T S+ + T Sbjct: 320 TSSSTTTTTTT------TSTTISSSSSSSKTSKTSTTSTTSSSISSTTSSTTSSTSSSST 373 Query: 366 SSPGRTRTPAASL*K-----STQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTPLL 530 SS + T +++ ST P S++ L ++ + T ++S S +T TP Sbjct: 374 SSSTSSTTSSSTTSSQISTTSTAPTSSTSLSSSTISTSASTSDTTSVTSSETTPVVTPSS 433 Query: 531 RTA*ITSAGPQRVRTVS 581 ++ IT G +S Sbjct: 434 LSSAITIPGDSTTTGIS 450
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 30.8 bits (68), Expect = 4.1 Identities = 32/112 (28%), Positives = 49/112 (43%) Frame = +3 Query: 189 SNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGTS 368 + S ++ T +P P+ L ++SPLT VS S T S T+ Sbjct: 1394 TTSTPISSTPQPTSSPT--TLPTTSPLTSSATSPTTSHITSTVSPTTSPTTS------TT 1445 Query: 369 SPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRPWTP 524 SP T +P S +T P +++ + P+ TTS+ P+ TST TP Sbjct: 1446 SP--TTSPTTS---TTSPTTST---TSPTPSPTTSTTSPTPSPTTSTTSPTP 1489
>TNAP3_HUMAN (P21580) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) (Putative DNA-binding protein A20) (Zinc finger protein A20) Length = 790 Score = 30.4 bits (67), Expect = 5.4 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%) Frame = +1 Query: 352 SPRGPAPQVARALQRPRCRRAHSRNRTACCEQR---SCRREPLRLGTAGQQASHRP 510 S R P+ ++ RP+C RA +N AC + C+ R+G + P Sbjct: 699 SQRRDVPRTTQSTSRPKCARASCKNILACRSEELCMECQHPNQRMGPGAHRGEPAP 754
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 30.4 bits (67), Expect = 5.4 Identities = 36/137 (26%), Positives = 50/137 (36%), Gaps = 2/137 (1%) Frame = +3 Query: 186 TSNSASLTPTRRPVWRPSMAVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGT 365 T+++ S TPT S++P T S T++ T Sbjct: 181 TTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTT----------STTSTTPTTSTT 230 Query: 366 SSPGRTRTPAASL*KSTQPKSNSL-LRATILPTRTTSSRDCRP-ASFTSTRPWTPLLRTA 539 + T T + + KST P ++S T T TTS+ P S TST T + TA Sbjct: 231 PTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAPTTSTTSTTSTTSTISTA 290 Query: 540 *ITSAGPQRVRTVSDMA 590 TS T S A Sbjct: 291 PTTSTTSSTFSTSSASA 307
>PAP2_YEAST (P53632) Poly(A) RNA polymerase protein 2 (EC 2.7.7.-) (DNA| polymerase sigma) (DNA polymerase kappa) (Topoisomerase 1-related protein TRF4) Length = 584 Score = 30.0 bits (66), Expect = 7.0 Identities = 12/45 (26%), Positives = 27/45 (60%) Frame = +2 Query: 299 NVKLNRERHVQRHGKRMPRQGDQLPRSHAHSSGLVVEEHTAEIEQ 433 ++ LN E V+ R ++ ++LP+ H + G++V EH ++ ++ Sbjct: 37 SISLNDENEVEILPSRNEQETNKLPKDHVTADGILVLEHKSDDDE 81
>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) Length = 790 Score = 30.0 bits (66), Expect = 7.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 352 SPRGPAPQVARALQRPRCRRAHSRNRTACCEQRSC 456 S R P+ ++ RP+C RA +N AC + C Sbjct: 699 SQRRDVPRTTQSTSRPKCARASCKNILACRSEELC 733
>YHCR_BACSU (P54602) Endonuclease yhcR precursor (EC 3.1.31.-)| Length = 1217 Score = 30.0 bits (66), Expect = 7.0 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 18/94 (19%) Frame = -1 Query: 409 FYNEAAGVRVRPGELVPLARHALAVPLHMPLT------------------IELDIRHGGS 284 F +EA V EL A+AV HM E+D+ Sbjct: 765 FTDEATAVNKAAEELKKKGVKAIAVLAHMSAEQNGNAITGESADLANKTDSEIDVIFAAH 824 Query: 283 GDEIVRGELEFKTAIDGLHTGRLVGVNDAEFEVT 182 ++V GE+ K + G+ +GV D E + T Sbjct: 825 NHQVVNGEVNGKLIVQAFEYGKAIGVVDVEIDKT 858
>EXT2_HUMAN (Q93063) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT2) (Multiple exostoses protein Length = 718 Score = 25.8 bits (55), Expect(2) = 8.5 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 168 STLGRHPCERADYYQLQILYGTQYELKNKCLSLT 67 S +G HP R D LQ+ +G + +KC +L+ Sbjct: 257 SQVGLHPEYREDLEALQVKHGESVLVLDKCTNLS 290 Score = 22.3 bits (46), Expect(2) = 8.5 Identities = 7/21 (33%), Positives = 15/21 (71%) Frame = -1 Query: 343 LAVPLHMPLTIELDIRHGGSG 281 +++P++ PL+ E+D+ G G Sbjct: 228 VSIPVYSPLSAEVDLPEKGPG 248
>TRZA_RHOCO (Q52725) S-triazine hydrolase (EC 3.8.1.-) (N-ethylammeline| chlorohydrolase) Length = 476 Score = 29.6 bits (65), Expect = 9.1 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +3 Query: 336 TASACLAKGTSSPGRTRTPAASL*KSTQPKSNSLLRATILPTRTTSSRDCRPASFTSTRP 515 T+++ K ++ PG +PA+S T KS+S + P TSS C S ++ P Sbjct: 40 TSTSAAPKSSTPPGWQCSPASSTPTPTSHKSSS---GVVHPMTATSSNGCTTCSIPASLP 96
>2A5D_YEAST (P38903) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit delta isoform (PP2A, B subunit, B' delta isoform) (Protein RTS1) (Protein SCS1) Length = 757 Score = 29.6 bits (65), Expect = 9.1 Identities = 24/91 (26%), Positives = 38/91 (41%) Frame = +3 Query: 243 AVLNSSSPLTIXXXXXXXXXXXXIVSGMCSGTASACLAKGTSSPGRTRTPAASL*KSTQP 422 A +SSS T G SG+ + +SS +T+T S+ Sbjct: 45 ASASSSSHGTTHSSASSTGSKSTTEKGKQSGSVPSQGKHHSSSTSKTKTATTPSSSSSSS 104 Query: 423 KSNSLLRATILPTRTTSSRDCRPASFTSTRP 515 +S+S+ R+ T+ TSSR + S S +P Sbjct: 105 RSSSVSRSGSSSTKKTSSRKGQEQSKQSQQP 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,647,104 Number of Sequences: 219361 Number of extensions: 2213276 Number of successful extensions: 7249 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 6896 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7240 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
